IVF0015524 (gene) Melon (IVF77) v1

Overview
NameIVF0015524
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr08: 17846645 .. 17847007 (-)
RNA-Seq ExpressionIVF0015524
SyntenyIVF0015524
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGAGATGCTCTCACCACAGCATTCTTGGATGTGTTCTTACTGAGCAGTTCTATTTTGGGCTGAGCAAGGACACACAACAATTTGTTGACGCTGTGTTTACAGGTGGGATGTTAAGATCATCCTATAGCCAAGTCAAAACTGCGCTGAACACTAAGCCCAACAATAGTAATGAATGAAGAGACAATGGTTTTGGATCATGGAATGACAATTGGGAAAATAGAGAAGATAAGGGAAAGTTAAAAGATGGAATGGATAGAAACGTAATGGTGGCGTTACAAGGTCAAGTCATCGAAATGAACAAGCTTTTTCAATATATGACATTATCGCAGGAGAGTGCTATGGGGAGCTCCGTTTAG

mRNA sequence

ATGATCAAGAGATGCTCTCACCACAGCATTCTTGGATGTGTTCTTACTGAGCAGTTCTATTTTGGGCTGAGCAAGGACACACAACAATTTGTTGACGCTGTGTTTACAGGTGGGATGTTAAGATCATCCTATAGCCAAGTCAAAACTGCGCTGAACACTAAGCCCAACAATAAAGATAAGGGAAAGTTAAAAGATGGAATGGATAGAAACGTAATGGTGGCGTTACAAGGTCAAGTCATCGAAATGAACAAGCTTTTTCAATATATGACATTATCGCAGGAGAGTGCTATGGGGAGCTCCGTTTAG

Coding sequence (CDS)

ATGATCAAGAGATGCTCTCACCACAGCATTCTTGGATGTGTTCTTACTGAGCAGTTCTATTTTGGGCTGAGCAAGGACACACAACAATTTGTTGACGCTGTGTTTACAGGTGGGATGTTAAGATCATCCTATAGCCAAGTCAAAACTGCGCTGAACACTAAGCCCAACAATAAAGATAAGGGAAAGTTAAAAGATGGAATGGATAGAAACGTAATGGTGGCGTTACAAGGTCAAGTCATCGAAATGAACAAGCTTTTTCAATATATGACATTATCGCAGGAGAGTGCTATGGGGAGCTCCGTTTAG

Protein sequence

MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNNKDKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV
Homology
BLAST of IVF0015524 vs. ExPASy TrEMBL
Match: A0A5D3DEY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00470 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.9e-24
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 1  MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNNKDK 60
          MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN ++
Sbjct: 28 MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNNSNE 87

BLAST of IVF0015524 vs. ExPASy TrEMBL
Match: A0A0A0L0Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.3e-23
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 1   MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALN-------- 60
           M+K C HH+ILGCV+ EQFYFGLS+DTQQFVDAVF GGMLR S + +KT L+        
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  -----------TKPNNKDKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV 102
                      +K N ++KG+   G + N M+ LQ QV EMNKL Q M LSQ +A+GSS+
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

BLAST of IVF0015524 vs. ExPASy TrEMBL
Match: A0A5A7TI80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00180 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.4e-23
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0

Query: 1  MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNNKDK 60
          MIKRCSHHSILGCV TEQFYFGLSKDT+QFVDAVFTGGMLRSSYSQVKTALNTKPNN ++
Sbjct: 28 MIKRCSHHSILGCVPTEQFYFGLSKDTRQFVDAVFTGGMLRSSYSQVKTALNTKPNNSNE 87

BLAST of IVF0015524 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 1   MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNNK-- 60
           MIKRC HH I  CVL EQFYFGLSK+T Q  + VFTGGMLRSSY+Q+K  L+T  +N   
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  -----------------DKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV 102
                            ++G+++DG+D ++MVALQGQVIEMN + Q M L Q + + SSV
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMALLQVNVVRSSV 139

BLAST of IVF0015524 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.9e-19
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 1   MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN--- 60
           ++K C  H I  CV  E FYFGLSKDT Q V+ +F GGMLRSSY+Q+K  L++  NN   
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  --------KDKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV 102
                   + +G+ K+G+D++V+V LQGQ+I MN L Q MTLSQ +A  + +
Sbjct: 81  WDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 132

BLAST of IVF0015524 vs. NCBI nr
Match: TYK21909.1 (hypothetical protein E5676_scaffold494G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 3.72e-33
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN 57
          MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN
Sbjct: 28 MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN 84

BLAST of IVF0015524 vs. NCBI nr
Match: KAA0041115.1 (hypothetical protein E6C27_scaffold128G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 1.76e-31
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 1  MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN 57
          MIKRCSHHSILGCV TEQFYFGLSKDT+QFVDAVFTGGMLRSSYSQVKTALNTKPNN
Sbjct: 28 MIKRCSHHSILGCVPTEQFYFGLSKDTRQFVDAVFTGGMLRSSYSQVKTALNTKPNN 84

BLAST of IVF0015524 vs. NCBI nr
Match: KGN53801.1 (hypothetical protein Csa_014772 [Cucumis sativus])

HSP 1 Score: 117 bits (293), Expect = 2.23e-31
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 1   MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALN-------- 60
           M+K C HH+ILGCV+ EQFYFGLS+DTQQFVDAVF GGMLR S + +KT L+        
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 61  -----------TKPNNKDKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV 101
                      +K N ++KG+   G + N M+ LQ QV EMNKL Q M LSQ +A+GSS+
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

BLAST of IVF0015524 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 1.30e-25
Identity = 61/120 (50.83%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 1   MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNNK-- 60
           MIKRC HH I  CVL EQFYFGLSK+T Q  + VFTGGMLRSSY+Q+K  L+T  +N   
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  -----------------DKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV 101
                            ++G+++DG+D ++MVALQGQVIEMN + Q M L Q + + SSV
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEMN-ILQSMALLQVNVVRSSV 139

BLAST of IVF0015524 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 103 bits (257), Expect = 1.61e-25
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 1   MIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSYSQVKTALNTKPNN--- 60
           ++K C  H I  CV  E FYFGLSKDT Q V+ +F GGMLRSSY+Q+K  L++  NN   
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  --------KDKGKLKDGMDRNVMVALQGQVIEMNKLFQYMTLSQESAMGSSV 101
                   + +G+ K+G+D++V+V LQGQ+I MN L Q MTLSQ +A  + +
Sbjct: 81  WDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DEY43.9e-2495.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L0Y43.3e-2351.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G131150 PE=4 SV=1[more]
A0A5A7TI807.4e-2391.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CC261.5e-2050.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6F94.9e-1947.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TYK21909.13.72e-33100.00hypothetical protein E5676_scaffold494G00470 [Cucumis melo var. makuwa][more]
KAA0041115.11.76e-3196.49hypothetical protein E6C27_scaffold128G00180 [Cucumis melo var. makuwa][more]
KGN53801.12.23e-3151.67hypothetical protein Csa_014772 [Cucumis sativus][more]
KAA0048713.11.30e-2550.83hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
KGN44484.11.61e-2547.32hypothetical protein Csa_015918 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015524.1IVF0015524.1mRNA