IVF0015509 (gene) Melon (IVF77) v1

Overview
NameIVF0015509
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr08: 14856869 .. 14857096 (-)
RNA-Seq ExpressionIVF0015509
SyntenyIVF0015509
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTTGTCGCGTGCCCCTAAGCATGTGTGGATAAAGGAGGAAGAGGTCACACTAGTGGAGTGTTTGGTGGAGTTGGTACCCGTAGTTGGATGGAAGTCAGACAACGGCACGTTCCAACCAGGTTATGTGGCCCAACTTGTCCGGATGATGACTGTAAAGTTGCCTGAATGTCTTGTCCAAGCCACTACTATTGTAGACTGCCGAATAAAGACATTGAAGTGA

mRNA sequence

ATGGCAAGTTTGTCGCGTGCCCCTAAGCATGTGTGGATAAAGGAGGAAGAGGTCACACTAGTGGAGTGTTTGGTGGAGTTGGTACCCGTAGTTGGATGGAAGTCAGACAACGGCACGTTCCAACCAGGTTATGTGGCCCAACTTGTCCGGATGATGACTGTAAAGTTGCCTGAATGTCTTGTCCAAGCCACTACTATTGTAGACTGCCGAATAAAGACATTGAAGTGA

Coding sequence (CDS)

ATGGCAAGTTTGTCGCGTGCCCCTAAGCATGTGTGGATAAAGGAGGAAGAGGTCACACTAGTGGAGTGTTTGGTGGAGTTGGTACCCGTAGTTGGATGGAAGTCAGACAACGGCACGTTCCAACCAGGTTATGTGGCCCAACTTGTCCGGATGATGACTGTAAAGTTGCCTGAATGTCTTGTCCAAGCCACTACTATTGTAGACTGCCGAATAAAGACATTGAAGTGA

Protein sequence

MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECLVQATTIVDCRIKTLK
Homology
BLAST of IVF0015509 vs. ExPASy TrEMBL
Match: A0A5D3BT72 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW+KEEE TLVEC +ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWMKEEEGTLVECFMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPRCQ 60

Query: 61 VQATTIVDCRIKTLK 76
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. ExPASy TrEMBL
Match: A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-24
Identity = 55/75 (73.33%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW KEEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 76
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. ExPASy TrEMBL
Match: A0A5A7TPF3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00590 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M +LSRAPKHVW KEEE T VECLV+LV + GWKS++GTF+PGY+AQLVRMMT KLP C 
Sbjct: 1  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCR 60

Query: 61 VQATTIVDCRIKTLK 76
          V+ATT +DCRIKTLK
Sbjct: 61 VRATTAIDCRIKTLK 75

BLAST of IVF0015509 vs. ExPASy TrEMBL
Match: A0A5A7USM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00480 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 54/75 (72.00%), Postives = 67/75 (89.33%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW++EEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWMREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 76
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. ExPASy TrEMBL
Match: A0A5A7TQ37 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003200 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW +EEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSIGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 76
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. NCBI nr
Match: KAA0046637.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 2.65e-32
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW +EEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 75
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. NCBI nr
Match: KAA0053616.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 2.65e-32
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW +EEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 75
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. NCBI nr
Match: KAA0036099.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 2.65e-32
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW +EEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 75
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. NCBI nr
Match: KAA0032394.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 3.66e-32
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW+KEEE TLVECL+ELV + GWKSDNGTF+PGY+AQ VRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWMKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQFVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 75
          V+ATT++DCRIKTLK
Sbjct: 61 VRATTVIDCRIKTLK 75

BLAST of IVF0015509 vs. NCBI nr
Match: KAA0053179.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (291), Expect = 5.66e-32
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 0

Query: 1  MASLSRAPKHVWIKEEEVTLVECLVELVPVVGWKSDNGTFQPGYVAQLVRMMTVKLPECL 60
          M++ +RAP+HVW +EEE TLVECL+ELV + GWKSDNGTF+PGY+AQLVRMM  KLP C 
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VQATTIVDCRIKTLK 75
          V+ TT++DCRIKTLK
Sbjct: 61 VRVTTVIDCRIKTLK 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BT722.9e-2472.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKT22.9e-2473.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TPF33.8e-2474.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7USM33.8e-2472.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TQ373.8e-2472.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0046637.12.65e-3272.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053616.12.65e-3272.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0036099.12.65e-3272.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0032394.13.66e-3272.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053179.15.66e-3270.67retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 5..75
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 5..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015509.1IVF0015509.1mRNA