IVF0015472 (gene) Melon (IVF77) v1

Overview


Name	IVF0015472
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	26S proteasome regulatory subunit 8 homolog
Location	tig00000607_ERROPOS641385+: 146459 .. 146726 (+)
RNA-Seq Expression	IVF0015472
Synteny	IVF0015472

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCAATTCGAGGGATCGACTTGAAAGGGATTGCTAAGAAGATGAATGGTGCATCCGGTGCTGAAGTTAAGGTCAGTTAGATTTTTACACGAAACATTCCTGTTTTTCTACTTCAGGTGAACAAACTTTAATGTCAATCTTGTTTCATCTTTTCAGACTCTTTGCACAGAAGTTGGAATGGCTGCTCTAAGAGAGAGAAGGGTTCATGTGACACAAGAAGATTTCGAGATGGCAATTGCAAAGGTTATGAAGAAAGACAAATAA

mRNA sequence

ATGAATCCAATTCGAGGGATCGACTTGAAAGGGATTGCTAAGAAGATGAATGGTGCATCCGGTGCTGAAGTTAAGACTCTTTGCACAGAAGTTGGAATGGCTGCTCTAAGAGAGAGAAGGGTTCATGTGACACAAGAAGATTTCGAGATGGCAATTGCAAAGGTTATGAAGAAAGACAAATAA

Coding sequence (CDS)

ATGAATCCAATTCGAGGGATCGACTTGAAAGGGATTGCTAAGAAGATGAATGGTGCATCCGGTGCTGAAGTTAAGACTCTTTGCACAGAAGTTGGAATGGCTGCTCTAAGAGAGAGAAGGGTTCATGTGACACAAGAAGATTTCGAGATGGCAATTGCAAAGGTTATGAAGAAAGACAAATAA

Protein sequence

MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKDK

Homology

[Close]

BLAST of IVF0015472 vs. ExPASy Swiss-Prot
Match: Q9C5U3 (26S proteasome regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPT6A PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-20
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0015472 vs. ExPASy Swiss-Prot
Match: Q94BQ2 (26S proteasome regulatory subunit 8 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPT6B PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-20
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0015472 vs. ExPASy Swiss-Prot
Match: P34124 (26S proteasome regulatory subunit 8 OS=Dictyostelium discoideum OX=44689 GN=psmC5 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-18
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN  RGI+LK I+ KMNGASGAE+K +CTE GM ALRERRVHV+QEDFEMA++KVMKKD
Sbjct: 333 MNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKKD 391

[Close]

BLAST of IVF0015472 vs. ExPASy Swiss-Prot
Match: P41836 (26S proteasome regulatory subunit 8 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=let1 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-18
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKK 59
           MN  RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFE+A+AKV+ K
Sbjct: 333 MNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNK 390

[Close]

BLAST of IVF0015472 vs. ExPASy Swiss-Prot
Match: P62194 (26S proteasome regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.5e-17
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN  RGI+L+ IA+ M GASGAEVK +CTE GM ALRERRVHVTQEDFEMA+AKVM+KD
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 394

[Close]

BLAST of IVF0015472 vs. ExPASy TrEMBL
Match: A0A5D3CAU9 (26S protease regulatory subunit 8-like protein B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G002090 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.3e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV 56
          MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV
Sbjct: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV 55

[Close]

BLAST of IVF0015472 vs. ExPASy TrEMBL
Match: A0A5A7UBM5 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold71G00080 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV 56
          MNP+RGIDLKGIA+KMNGASGAEVK +CTEVGM ALRERRVHVTQEDFEMAIAKV
Sbjct: 1  MNPMRGIDLKGIAEKMNGASGAEVKAICTEVGMFALRERRVHVTQEDFEMAIAKV 55

[Close]

BLAST of IVF0015472 vs. ExPASy TrEMBL
Match: A0A5A7UDC9 (Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002070 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.2e-18
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAK 55
          MNP+RGIDLKGIA+KMNGASGAEVK +CTEVGM ALRERRVHVTQEDFEMAIAK
Sbjct: 1  MNPMRGIDLKGIAEKMNGASGAEVKAVCTEVGMFALRERRVHVTQEDFEMAIAK 54

[Close]

BLAST of IVF0015472 vs. ExPASy TrEMBL
Match: A0A2Z7D8Y5 (AAA domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_06097 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.2e-18
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKKD
Sbjct: 348 MNMMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 406

[Close]

BLAST of IVF0015472 vs. ExPASy TrEMBL
Match: A0A2Z7BDG2 (AAA domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_29856 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.2e-18
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKKD
Sbjct: 370 MNMMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 428

[Close]

BLAST of IVF0015472 vs. NCBI nr
Match: KAA0025188.1 (26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa] >TYK07476.1 26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 6.71e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV 55
          MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV
Sbjct: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV 55

[Close]

BLAST of IVF0015472 vs. NCBI nr
Match: KAA0051596.1 (thioredoxin F-type [Cucumis melo var. makuwa] >TYK30543.1 thioredoxin F-type [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 6.46e-25
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKV 55
          MNP+RGIDLKGIA+KMNGASGAEVK +CTEVGM ALRERRVHVTQEDFEMAIAKV
Sbjct: 1  MNPMRGIDLKGIAEKMNGASGAEVKAICTEVGMFALRERRVHVTQEDFEMAIAKV 55

[Close]

BLAST of IVF0015472 vs. NCBI nr
Match: KAB2046937.1 (hypothetical protein ES319_A13G011500v1 [Gossypium barbadense] >KAB2094464.1 hypothetical protein ES319_A02G160400v1 [Gossypium barbadense] >KAG4211493.1 hypothetical protein ERO13_A02G109502v2 [Gossypium hirsutum] >TYH38631.1 hypothetical protein ES332_D12G122900v1 [Gossypium tomentosum] >TYJ50053.1 hypothetical protein E1A91_A01G179300v1 [Gossypium mustelinum])

HSP 1 Score: 96.3 bits (238), Expect = 1.81e-24
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 59
          MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKK+
Sbjct: 1  MNLMRGIDLKKIAEKMNGASGAELKAVCTESGMFALRERRVHVTQEDFEMAVAKVMKKE 59

[Close]

BLAST of IVF0015472 vs. NCBI nr
Match: TYH63822.1 (hypothetical protein ES332_D07G221800v1 [Gossypium tomentosum])

HSP 1 Score: 96.3 bits (238), Expect = 2.07e-24
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 59
          MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKK+
Sbjct: 6  MNLMRGIDLKKIAEKMNGASGAELKAVCTESGMFALRERRVHVTQEDFEMAVAKVMKKE 64

[Close]

BLAST of IVF0015472 vs. NCBI nr
Match: KAG4115431.1 (hypothetical protein ERO13_D12G103900v2, partial [Gossypium hirsutum])

HSP 1 Score: 96.7 bits (239), Expect = 2.47e-24
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 59
          MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKK+
Sbjct: 25 MNLMRGIDLKKIAEKMNGASGAELKAMCTESGMFALRERRVHVTQEDFEMAVAKVMKKE 83

[Close]

BLAST of IVF0015472 vs. TAIR 10
Match: AT5G19990.1 (regulatory particle triple-A ATPase 6A )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0015472 vs. TAIR 10
Match: AT5G20000.1 (AAA-type ATPase family protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-21
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKD 60
           MN +RGIDLK IA+KMNGASGAE+K +CTE GM ALRERRVHVTQEDFEMA+AKVMKKD
Sbjct: 349 MNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKD 407

[Close]

BLAST of IVF0015472 vs. TAIR 10
Match: AT4G29040.1 (regulatory particle AAA-ATPase 2A )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 7   IDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKDK 61
           ++L+      +  SGA++K +CTE G+ ALRERR+ VT  DF+ A  KVM K K
Sbjct: 381 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKK 434

[Close]

BLAST of IVF0015472 vs. TAIR 10
Match: AT2G20140.1 (AAA-type ATPase family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 7   IDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMKKDK 61
           ++L+      +  SGA++K +CTE G+ ALRERR+ VT  DF+ A  KVM K K
Sbjct: 381 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKK 434

[Close]

BLAST of IVF0015472 vs. TAIR 10
Match: AT1G53750.1 (regulatory particle triple-A 1A )

HSP 1 Score: 47.4 bits (111), Expect = 4.8e-06
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 1   MNPIRGIDLKGIAKKMNGASGAEVKTLCTEVGMAALRERRVHVTQEDFEMAIAKVMK 58
           MN  R I  + +A+    ++GA+++++CTE GM A+R RR  VT++DF  A+ KV+K
Sbjct: 355 MNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIK 411

The following BLAST results are available for this feature:

BLAST of IVF0015472 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5U3	2.6e-20	83.05	26S proteasome regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q94BQ2	2.6e-20	83.05	26S proteasome regulatory subunit 8 homolog B OS=Arabidopsis thaliana OX=3702 GN...	[more]
P34124	4.1e-18	76.27	26S proteasome regulatory subunit 8 OS=Dictyostelium discoideum OX=44689 GN=psmC...	[more]
P41836	4.1e-18	77.59	26S proteasome regulatory subunit 8 homolog OS=Schizosaccharomyces pombe (strain...	[more]
P62194	4.5e-17	76.27	26S proteasome regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMC5 PE=2 SV=1	[more]

BLAST of IVF0015472 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAU9	5.3e-21	100.00	26S protease regulatory subunit 8-like protein B-like OS=Cucumis melo var. makuw...	[more]
A0A5A7UBM5	1.1e-18	90.91	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold71G00...	[more]
A0A5A7UDC9	4.2e-18	90.74	Thioredoxin F-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00...	[more]
A0A2Z7D8Y5	7.2e-18	83.05	AAA domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_0609...	[more]
A0A2Z7BDG2	7.2e-18	83.05	AAA domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_2985...	[more]

BLAST of IVF0015472 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025188.1	6.71e-29	100.00	26S protease regulatory subunit 8-like protein B-like [Cucumis melo var. makuwa]...	[more]
KAA0051596.1	6.46e-25	90.91	thioredoxin F-type [Cucumis melo var. makuwa] >TYK30543.1 thioredoxin F-type [Cu...	[more]
KAB2046937.1	1.81e-24	81.36	hypothetical protein ES319_A13G011500v1 [Gossypium barbadense] >KAB2094464.1 hyp...	[more]
TYH63822.1	2.07e-24	81.36	hypothetical protein ES332_D07G221800v1 [Gossypium tomentosum]	[more]
KAG4115431.1	2.47e-24	81.36	hypothetical protein ERO13_D12G103900v2, partial [Gossypium hirsutum]	[more]

BLAST of IVF0015472 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19990.1	1.8e-21	83.05	regulatory particle triple-A ATPase 6A	[more]
AT5G20000.1	1.8e-21	83.05	AAA-type ATPase family protein	[more]
AT4G29040.1	1.3e-06	46.30	regulatory particle AAA-ATPase 2A	[more]
AT2G20140.1	1.6e-06	46.30	AAA-type ATPase family protein	[more]
AT1G53750.1	4.8e-06	42.11	regulatory particle triple-A 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041569	AAA ATPase, AAA+ lid domain	PFAM	PF17862	AAA_lid_3	coord: 7..49 e-value: 8.5E-13 score: 47.9
None	No IPR available	GENE3D	1.10.8.60		coord: 1..60 e-value: 2.8E-19 score: 70.7
None	No IPR available	PANTHER	PTHR23073	26S PROTEASOME REGULATORY SUBUNIT	coord: 1..59
IPR035261	26S proteasome regulatory subunit 8	PANTHER	PTHR23073:SF102	BNAA02G04630D PROTEIN	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015472.2	IVF0015472.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0008540	proteasome regulatory particle, base subcomplex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0036402	proteasome-activating activity