IVF0015467 (gene) Melon (IVF77) v1

Overview


Name	IVF0015467
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNase H domain-containing protein
Location	chr12: 21665631 .. 21666348 (-)
RNA-Seq Expression	IVF0015467
Synteny	IVF0015467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCAACAATTTGACTTCCCTCTACAATCATTCCTTCCTTCTTTCTCTTTGCTTCTCTCAAATTAAATCCGATATCTTTCCACAAATTGTGAAATGACAAAATGTTTAACATTCTGAAATCCCTCAATTACCAAAACATCCGTTCAAAATCATTATTAGCAGCAAGACAATTGCACAAACAACCGAAACCGATTCCAGTGGCATGGAGAAGGCCGGAAATTGGATGGACAAAGCTGAATTTTGACGGCTCTTCAAAAGGGGATAAAGCACCGGGTCTGGCCAGCATTGGGGGCGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGGCCATAGGGAGAGCCAATAGCGCCATGGCTGAACTTACTGCACTTACCAAAGGCTTGGAATTGGTCCTCGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGATAAGGGATTGGTGGAAATATTAGCTGATAATAAAGAGGTTAAATGTGTGGAAACTCGAAGTTACTTTAGATACATTAAATCTTTAATACTTGATTTAGATAATTGTAAAGTAAGTCATATTTATAGGGAAGGTAATAAAGTTGCAGATAGATTTGCTTCCATTGGTCATCGTTATAAGAAGCTTGAAATATGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGACCATAA

mRNA sequence

ATTCTCAACAATTTGACTTCCCTCTACAATCATTCCTTCCTTCTTTCTCTTTGCTTCTCTCAAATTAAATCCGATATCTTTCCACAAATTGTGAAATGACAAAATGTTTAACATTCTGAAATCCCTCAATTACCAAAACATCCGTTCAAAATCATTATTAGCAGCAAGACAATTGCACAAACAACCGAAACCGATTCCAGTGGCATGGAGAAGGCCGGAAATTGGATGGACAAAGCTGAATTTTGACGGCTCTTCAAAAGGGGATAAAGCACCGGGTCTGGCCAGCATTGGGGGCGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGGCCATAGGGAGAGCCAATAGCGCCATGGCTGAACTTACTGCACTTACCAAAGGCTTGGAATTGGTCCTCGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGATAAGGGATTGGTGGAAATATTAGCTGATAATAAAGAGGTTAAATGTGTGGAAACTCGAAGTTACTTTAGATACATTAAATCTTTAATACTTGATTTAGATAATTGTAAAGTAAGTCATATTTATAGGGAAGGTAATAAAGTTGCAGATAGATTTGCTTCCATTGGTCATCGTTATAAGAAGCTTGAAATATGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGACCATAA

Coding sequence (CDS)

ATGTTTAACATTCTGAAATCCCTCAATTACCAAAACATCCGTTCAAAATCATTATTAGCAGCAAGACAATTGCACAAACAACCGAAACCGATTCCAGTGGCATGGAGAAGGCCGGAAATTGGATGGACAAAGCTGAATTTTGACGGCTCTTCAAAAGGGGATAAAGCACCGGGTCTGGCCAGCATTGGGGGCGTTTTAAGAGACCACAAGGCCCAGTTTTTGTTAGGATATGCAGAGGCCATAGGGAGAGCCAATAGCGCCATGGCTGAACTTACTGCACTTACCAAAGGCTTGGAATTGGTCCTCGAAAATGGGTGGAAGGATGTTTGGGTTGAAGGAGATGATAAGGGATTGGTGGAAATATTAGCTGATAATAAAGAGGTTAAATGTGTGGAAACTCGAAGTTACTTTAGATACATTAAATCTTTAATACTTGATTTAGATAATTGTAAAGTAAGTCATATTTATAGGGAAGGTAATAAAGTTGCAGATAGATTTGCTTCCATTGGTCATCGTTATAAGAAGCTTGAAATATGGAGGGAACTTCCTCCATTGGAGACTTTGGATATGATGCGTCATGATGCTGAGGGGAAGATTACTTTTAGGAGACCATAA

Protein sequence

MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWRELPPLETLDMMRHDAEGKITFRRP

Homology

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BLAST of IVF0015467 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-13
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 0


Query: 33  VAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAIGRANSAMAELT 92
           + W  P +GW K+N DG+S+G+  PGLAS GGVLRD    +  G++  IGR ++  AEL 
Sbjct: 450 IGWVSPCVGWVKVNTDGASRGN--PGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELW 509

Query: 93  ALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIKSLILDLD-NCK 152
            +  GL    E     V +E D + +V  L     +      S+   +    L  D   +
Sbjct: 510 GVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTG--ISDSHPLSFLVRLCHGFLQKDWLVR 569

Query: 153 VSHIYREGNKVADRFASIGHRYKKLEIWRELPPLETLDMMRHDAEGKITFRR 204
           + H+YRE N++AD  A+            +L P     ++R D  G    RR
Sbjct: 570 IVHVYREANRLADGLANYAFSLSLGFHSFDLVPDAMSSLLREDTLGSTRPRR 617

[Close]

BLAST of IVF0015467 vs. ExPASy TrEMBL
Match: A0A5D3DS33 (Putative ribonuclease H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00240 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.1e-113
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLA 60
           MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLA
Sbjct: 1   MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLA 60

Query: 61  SIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVE 120
           SIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVE
Sbjct: 61  SIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVE 120

Query: 121 ILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWR 180
           ILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWR
Sbjct: 121 ILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWR 180

Query: 181 ELPPLETLDMMRHDAEGKITFRRP 205
           ELPPLETLDMMRHDAEGKITFRRP
Sbjct: 181 ELPPLETLDMMRHDAEGKITFRRP 204

[Close]

BLAST of IVF0015467 vs. ExPASy TrEMBL
Match: A0A0A0LUF5 (RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071820 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.9e-95
Identity = 176/204 (86.27%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 1   MFNILKSLNYQNIRSKS-LLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGL 60
           MFNI KS NYQ I SKS LLAAR+LHK+P PIPVAW RPE GWTKLNFDGSSKG+  PG+
Sbjct: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60

Query: 61  ASIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLV 120
           ASIGGVLRDHKAQFLLGYAE+IGRA S+MAEL ALTKGLELVLENGWKDVWVEGD KGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120

Query: 121 EILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIW 180
           EILA+N+EVKC+E RSY R+IKSL+LD DNCKVSHIYREGNKVADRFASIGHR KKLEIW
Sbjct: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRR 204
           RELPPLETLDMMRHDAEGKITFRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRR 204

[Close]

BLAST of IVF0015467 vs. ExPASy TrEMBL
Match: A0A2P6Q3E3 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0005841 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.4e-58
Identity = 109/182 (59.89%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 22  RQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAI 81
           R LHK+   IPVAW +P+IGWTKLNFDGSSKG      ASIGG+ R+HKA+FLLGYAE+I
Sbjct: 30  RSLHKE--SIPVAWEKPKIGWTKLNFDGSSKGKAEK--ASIGGLFRNHKAEFLLGYAESI 89

Query: 82  GRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIK 141
           GRANS +AEL AL +GLELVLENGW DVW+EGD K L+ I+A  K+V+C E + +   I 
Sbjct: 90  GRANSVIAELAALRRGLELVLENGWSDVWLEGDAKTLLHIIAKRKQVRCAEAQRHVCEIN 149

Query: 142 SLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWRELPPLETLDMMRHDAEGKITF 201
           S+I +L+NC ++HIYREGN+ AD+FA +GH Y+K +IW  +PP + L +M  DAEGK+ F
Sbjct: 150 SIIPELNNCVLTHIYREGNRAADKFAKMGHWYQKPQIWEHIPPHQVLSIMHEDAEGKVLF 207

Query: 202 RR 204
           R+
Sbjct: 210 RK 207

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BLAST of IVF0015467 vs. ExPASy TrEMBL
Match: A0A0J8B4H6 (RNase H domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_015560 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 5.4e-57
Identity = 111/193 (57.51%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 11  QNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHK 70
           QN     LL  + LHK+  PIPVAW +P+IGWTKLNFDGSSKG    G ASIGGV RDH 
Sbjct: 19  QNPSIARLLLVKSLHKE--PIPVAWEKPKIGWTKLNFDGSSKG--KTGEASIGGVFRDHN 78

Query: 71  AQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKC 130
           A+F+LGYAE+IGR++S +AEL AL +GLE++LENGW DVW+EGD K LV I+   + ++ 
Sbjct: 79  AKFMLGYAESIGRSDSTIAELAALLRGLEIILENGWDDVWLEGDAKALVNIITKRRSMRS 138

Query: 131 VETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWRELPPLETLDM 190
           +E + Y  YI ++I +L+N  +SHIYREGN+VAD+FA IGH+ +   IWR  PP E L +
Sbjct: 139 LEAQKYISYINAIIPELNNYTMSHIYREGNRVADKFAQIGHQLETPCIWRHAPPDEVLPI 198

Query: 191 MRHDAEGKITFRR 204
           M  DAEGKI  RR
Sbjct: 199 MHEDAEGKIILRR 207

[Close]

BLAST of IVF0015467 vs. ExPASy TrEMBL
Match: A0A2N9IF10 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50940 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-56
Identity = 112/201 (55.72%), Postives = 143/201 (71.14%), Query Frame = 0


Query: 3   NILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASI 62
           NIL+  +   +++      R  HK+   IPV W +PEIGWTKLNFDGSSKG      ASI
Sbjct: 6   NILRCQSRPILQNSVRFFLRNWHKE--AIPVTWEKPEIGWTKLNFDGSSKG--RANKASI 65

Query: 63  GGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEIL 122
           GGV R+HKA+FLLGYAE+IG+ANS +AEL AL +GLELVLENGW DVW+EGD K L++I+
Sbjct: 66  GGVFRNHKAEFLLGYAESIGKANSTIAELAALRRGLELVLENGWNDVWLEGDAKTLIDII 125

Query: 123 ADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWREL 182
              + VKC+E + +   I  ++L+LDN  V+H+YREGN+ AD+FA IGH  K   IWRE 
Sbjct: 126 VQGRRVKCLEVQRHISDINLILLELDNFHVTHVYREGNRAADKFAQIGHHMKNPGIWRED 185

Query: 183 PPLETLDMMRHDAEGKITFRR 204
           PP E L +M+ DA+GKI  RR
Sbjct: 186 PPDELLAIMKEDAQGKIVLRR 202

[Close]

BLAST of IVF0015467 vs. NCBI nr
Match: KAA0056936.1 (putative ribonuclease H protein [Cucumis melo var. makuwa] >TYK26364.1 putative ribonuclease H protein [Cucumis melo var. makuwa])

HSP 1 Score: 418 bits (1075), Expect = 1.20e-147
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLA 60
           MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLA
Sbjct: 1   MFNILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLA 60

Query: 61  SIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVE 120
           SIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVE
Sbjct: 61  SIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVE 120

Query: 121 ILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWR 180
           ILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWR
Sbjct: 121 ILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWR 180

Query: 181 ELPPLETLDMMRHDAEGKITFRRP 204
           ELPPLETLDMMRHDAEGKITFRRP
Sbjct: 181 ELPPLETLDMMRHDAEGKITFRRP 204

[Close]

BLAST of IVF0015467 vs. NCBI nr
Match: KAE8652698.1 (hypothetical protein Csa_013405 [Cucumis sativus])

HSP 1 Score: 357 bits (916), Expect = 3.67e-123
Identity = 176/204 (86.27%), Postives = 187/204 (91.67%), Query Frame = 0


Query: 1   MFNILKSLNYQNIRSKSLL-AARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGL 60
           MFNI KS NYQ I SKSLL AAR+LHK+P PIPVAW RPE GWTKLNFDGSSKG+  PG+
Sbjct: 1   MFNIFKSSNYQIIISKSLLLAARELHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGV 60

Query: 61  ASIGGVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLV 120
           ASIGGVLRDHKAQFLLGYAE+IGRA S+MAEL ALTKGLELVLENGWKDVWVEGD KGLV
Sbjct: 61  ASIGGVLRDHKAQFLLGYAESIGRAYSSMAELKALTKGLELVLENGWKDVWVEGDAKGLV 120

Query: 121 EILADNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIW 180
           EILA+N+EVKC+E RSY R+IKSL+LD DNCKVSHIYREGNKVADRFASIGHR KKLEIW
Sbjct: 121 EILAENREVKCMEARSYLRHIKSLLLDFDNCKVSHIYREGNKVADRFASIGHRCKKLEIW 180

Query: 181 RELPPLETLDMMRHDAEGKITFRR 203
           RELPPLETLDMMRHDAEGKITFRR
Sbjct: 181 RELPPLETLDMMRHDAEGKITFRR 204

[Close]

BLAST of IVF0015467 vs. NCBI nr
Match: KAG6584039.1 (putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323 bits (828), Expect = 6.13e-110
Identity = 155/199 (77.89%), Postives = 176/199 (88.44%), Query Frame = 0


Query: 4   ILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIG 63
           +LK  NYQ  R ++LL ARQ HKQP  IPVAW+RP+IGWTKLNFDGSS+G  +PG ASIG
Sbjct: 7   MLKCPNYQINRIRALLLARQCHKQP--IPVAWKRPDIGWTKLNFDGSSRGKMSPGRASIG 66

Query: 64  GVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILA 123
           GVLRDH+AQFLLGYAE IGRANS +AELTAL+KGLELVLENGWKDVW+EGD KGL+EI+ 
Sbjct: 67  GVLRDHQAQFLLGYAEPIGRANSTIAELTALSKGLELVLENGWKDVWLEGDAKGLIEIIV 126

Query: 124 DNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWRELP 183
             K+ KCVE RS FRYI SLILDL+NCKVSHIYREGN+VA+RFASIGHRYKKLE+WR++P
Sbjct: 127 GKKKAKCVEARSQFRYINSLILDLNNCKVSHIYREGNRVANRFASIGHRYKKLEVWRDIP 186

Query: 184 PLETLDMMRHDAEGKITFR 202
           PLETLDMMR DAEGKI+FR
Sbjct: 187 PLETLDMMREDAEGKISFR 203

[Close]

BLAST of IVF0015467 vs. NCBI nr
Match: XP_038895327.1 (uncharacterized protein LOC120083578 [Benincasa hispida])

HSP 1 Score: 275 bits (702), Expect = 1.14e-90
Identity = 146/200 (73.00%), Postives = 150/200 (75.00%), Query Frame = 0


Query: 4   ILKSLNYQNIRSKSLLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIG 63
           ILK  NYQ IRS     ARQ HKQP  IPVAW RPEIGWTKLNFDGSSKG K PG ASIG
Sbjct: 7   ILKCSNYQIIRSS---LARQWHKQP--IPVAWTRPEIGWTKLNFDGSSKGKKTPGRASIG 66

Query: 64  GVLRDHKAQFLLGYAEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILA 123
           GVLRDH AQFLLGYAE IGRANS MAELTALTKGLELVLENGWKDVWVEGD KGLVEI+ 
Sbjct: 67  GVLRDHDAQFLLGYAEPIGRANSTMAELTALTKGLELVLENGWKDVWVEGDAKGLVEIIV 126

Query: 124 DNKEVKCVETRSYFRYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWRELP 183
           +NKEVKCVE RS+FR                           FASIGHRYKKLEIWRE+P
Sbjct: 127 ENKEVKCVEARSHFR---------------------------FASIGHRYKKLEIWREIP 174

Query: 184 PLETLDMMRHDAEGKITFRR 203
           PLE LDMMR DAEGKITFRR
Sbjct: 187 PLEILDMMRQDAEGKITFRR 174

[Close]

BLAST of IVF0015467 vs. NCBI nr
Match: KAG5516709.1 (hypothetical protein RHGRI_037449 [Rhododendron griersonianum])

HSP 1 Score: 235 bits (599), Expect = 3.50e-75
Identity = 113/186 (60.75%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 18  LLAARQLHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGY 77
           L   R  HK+P  I VAW +PEIGWTKLNFDGS KG    G ASIGGV R+HKA+FLLGY
Sbjct: 20  LAIIRNWHKEP--IQVAWEKPEIGWTKLNFDGSCKGKT--GKASIGGVFRNHKAEFLLGY 79

Query: 78  AEAIGRANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYF 137
           AEAIGR  S +AEL AL +GLELVLENGW+DVW+EGD K LVEI+A  K VKC E + + 
Sbjct: 80  AEAIGRTTSTIAELAALRRGLELVLENGWEDVWLEGDSKALVEIIARRKRVKCAEAQGHI 139

Query: 138 RYIKSLILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEIWRELPPLETLDMMRHDAEG 197
            +I  +I +L+NC +SH+YREGNK AD+FA +GH+ KK ++WR  PP + L +M  DAEG
Sbjct: 140 SHINLMIPELNNCMLSHVYREGNKAADKFAQMGHQMKKPQVWRHNPPHQVLRIMHDDAEG 199

Query: 198 KITFRR 203
           KI  R+
Sbjct: 200 KIFLRK 201

[Close]

BLAST of IVF0015467 vs. TAIR 10
Match: AT1G04625.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-11
Identity = 47/141 (33.33%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 29  KPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAIG--RANS 88
           +P    W  P IGWTK N+DG+   + AP  A  G +LRD +  F LG A AIG    N 
Sbjct: 76  EPTANLWTTPPIGWTKCNYDGTYHSN-APSKA--GWLLRDDRGTF-LGAAHAIGSITTNP 135

Query: 89  AMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIKSLILD 148
             +EL AL   ++     G++ ++ EGD+K + EI+  N         ++ R I +    
Sbjct: 136 MESELQALVMAMQHCWSRGYRKIYFEGDNKEVSEIV--NGRSSNFAVFNWIRDISAWRSK 195

Query: 149 LDNCKVSHIYREGNKVADRFA 168
            + CK +   R  N  AD  A
Sbjct: 196 FEECKFTWTRRFSNMAADALA 210

[Close]

BLAST of IVF0015467 vs. TAIR 10
Match: AT2G46460.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 5.8e-11
Identity = 39/136 (28.68%), Postives = 68/136 (50.00%), Query Frame = 0


Query: 33  VAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFL-LGYAEAIGRANSAMAEL 92
           + W RP  GW K N+DGS   +     +  G ++RD   QF+  G A     +N+  +E 
Sbjct: 1   MGWTRPPHGWKKCNYDGSYNREMP---SKAGWIIRDESGQFVSAGQATGNHTSNALESEF 60

Query: 93  TALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIKSLILDLDNCK 152
            AL   ++    +G + +W EGD++ ++EIL  N+     +  ++ R +++       C+
Sbjct: 61  QALLITMQSCWSHGHRKIWFEGDNREVMEIL--NRRKSRFDIFNWIRDVQAWKQRFQECR 120

Query: 153 VSHIYREGNKVADRFA 168
            + I R+ NK AD  A
Sbjct: 121 FTWINRKQNKPADILA 131

[Close]

BLAST of IVF0015467 vs. TAIR 10
Match: AT5G42905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 33  VAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAIGRANSAMAELT 92
           + W  P +GW K+N DG+S+G+  PGLAS GGVLRD +  +  G++  IGR ++  AEL 
Sbjct: 138 IGWVLPCVGWVKVNTDGASRGN--PGLASAGGVLRDCEGAWCGGFSLNIGRCSAQHAELW 197

Query: 93  ALTKGLELVLENGWKDVWVEGDDKGLVEIL 123
            +  GL    E     V +E D + +V  L
Sbjct: 198 GVYYGLYFAWEKKVPRVELEVDSEAIVGFL 225

[Close]

BLAST of IVF0015467 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-10
Identity = 46/135 (34.07%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 35  WRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAIGRA--NSAMAELT 94
           WRRPE GW K NFDGS         A  G V+RD    +LL   +AIGR   N+  +E+ 
Sbjct: 52  WRRPERGWIKCNFDGSFVNGDVKSKA--GWVVRDSNGSYLLA-GQAIGRKVDNALESEIQ 111

Query: 95  ALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIKSLILDLDNCKV 154
           AL   ++    +G+K V  EGD+K L +++  +K    V   ++ R I   +   ++   
Sbjct: 112 ALIISMQHCWSHGYKRVCFEGDNKMLFDLINGSKVYFGV--HNWIRDIHWWLRKFESIHF 171

Query: 155 SHIYREGNKVADRFA 168
           + I R  N  AD  A
Sbjct: 172 NWIRRHHNTPADILA 181

[Close]

BLAST of IVF0015467 vs. TAIR 10
Match: AT1G24090.1 (RNase H family protein )

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 44/155 (28.39%), Postives = 73/155 (47.10%), Query Frame = 0


Query: 24  LHKQPKPIPVAWRRPEIGWTKLNFDGSSKGDKAPGLASIGGVLRDHKAQFLLGYAEAIGR 83
           L K  K  P A+   E  +  + FDG+SKG+  PGL+    VL+      +    + +G 
Sbjct: 200 LEKLSKVEPSAYISDETCF--IEFDGASKGN--PGLSGAAAVLKTEDGSLICRVRQGLGI 259

Query: 84  ANSAMAELTALTKGLELVLENGWKDVWVEGDDKGLVEILADNKEVKCVETRSYFRYIKSL 143
           A +  AE  AL  GL+  +E G+K++ V+GD K +   +    +V         +  K L
Sbjct: 260 ATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLL 319

Query: 144 ILDLDNCKVSHIYREGNKVADRFASIGHRYKKLEI 179
                + ++SH+ R  N  AD  A++  R  + E+
Sbjct: 320 CNKCVSFEISHVLRNLNADADEQANLAVRLPEGEV 350

The following BLAST results are available for this feature:

BLAST of IVF0015467 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	6.0e-13	31.40	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of IVF0015467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DS33	1.1e-113	100.00	Putative ribonuclease H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0LUF5	2.9e-95	86.27	RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071820 PE=...	[more]
A0A2P6Q3E3	6.4e-58	59.89	Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464...	[more]
A0A0J8B4H6	5.4e-57	57.51	RNase H domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BV...	[more]
A0A2N9IF10	1.2e-56	55.72	RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50940 ...	[more]

BLAST of IVF0015467 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056936.1	1.20e-147	100.00	putative ribonuclease H protein [Cucumis melo var. makuwa] >TYK26364.1 putative ...	[more]
KAE8652698.1	3.67e-123	86.27	hypothetical protein Csa_013405 [Cucumis sativus]	[more]
KAG6584039.1	6.13e-110	77.89	putative ribonuclease H protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038895327.1	1.14e-90	73.00	uncharacterized protein LOC120083578 [Benincasa hispida]	[more]
KAG5516709.1	3.50e-75	60.75	hypothetical protein RHGRI_037449 [Rhododendron griersonianum]	[more]

BLAST of IVF0015467 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04625.1	4.4e-11	33.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G46460.1	5.8e-11	28.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G42905.1	1.7e-10	40.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27870.1	6.4e-10	34.07	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G24090.1	3.2e-09	28.39	RNase H family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 42..171 e-value: 1.6E-23 score: 85.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 46..168 e-value: 5.9E-30 score: 103.6
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 39..172 score: 11.152115
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 9..198
None	No IPR available	PANTHER	PTHR47723:SF3	OS06G0683500 PROTEIN	coord: 9..198
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 45..167 e-value: 8.56255E-32 score: 110.096
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 42..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015467.1	IVF0015467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity