IVF0015446 (gene) Melon (IVF77) v1

Overview
NameIVF0015446
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr03: 9911189 .. 9911416 (-)
RNA-Seq ExpressionIVF0015446
SyntenyIVF0015446
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTAATTCAAACTCAAATTCATCAAGAGGTAGAGGAAGACAACATTATTCGAGGTCAAGTTGGGAAAGATCAAATAATGACAGGAGATATGACAAAAGACAGGTTGAATGTTATAATTGTCATAAATTCGGCCATTATTCTTGGGAATGCAGAAATAGAGTTGAAGAAAATGCAAATTATGCTGAGAAAGATGAAGAAAGAGGTGATTCCTCATTGTTTCTAG

mRNA sequence

ATGAGAGTAATTCAAACTCAAATTCATCAAGAGGTAGAGGAAGACAACATTATTCGAGGAGATATGACAAAAGACAGGTTGAATGTTATAATTGTCATAAATTCGGCCATTATTCTTGGGAATGCAGAAATAGAGTTGAAGAAAATGCAAATTATGCTGAGAAAGATGAAGAAAGAGGTGATTCCTCATTGTTTCTAG

Coding sequence (CDS)

ATGAGAGTAATTCAAACTCAAATTCATCAAGAGGTAGAGGAAGACAACATTATTCGAGGAGATATGACAAAAGACAGGTTGAATGTTATAATTGTCATAAATTCGGCCATTATTCTTGGGAATGCAGAAATAGAGTTGAAGAAAATGCAAATTATGCTGAGAAAGATGAAGAAAGAGGTGATTCCTCATTGTTTCTAG

Protein sequence

MRVIQTQIHQEVEEDNIIRGDMTKDRLNVIIVINSAIILGNAEIELKKMQIMLRKMKKEVIPHCF
Homology
BLAST of IVF0015446 vs. ExPASy TrEMBL
Match: A0A5A7TIB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00210 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.8e-21
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1   MRVIQTQIHQEVEEDNIIRGD----------MTKDRLNVIIVINSAIILGNAEIELKKMQ 60
           ++VIQTQIHQEVEEDNIIRG           MTKDRLNVIIVINSAI+LGNAEIELKKMQ
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287

Query: 61  IMLRKMKKEVIPHCF 66
           IMLRKMKK VIPHCF
Sbjct: 288 IMLRKMKKAVIPHCF 302

BLAST of IVF0015446 vs. ExPASy TrEMBL
Match: A0A5A7UV40 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00400 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 8   IHQEVEEDNIIRGDMTKDRLNVIIVINSAIILGNAEIELKKMQIMLRKMKKEVIPHCF 66
           I  +VE+D I+ G MTKD LNVIIVIN AIILGNAEIE KKMQ ML+ MKK VIPHCF
Sbjct: 95  IRGQVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152

BLAST of IVF0015446 vs. NCBI nr
Match: KAA0043083.1 (uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 5.22e-26
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1   MRVIQTQIHQEVEEDNIIRGD----------MTKDRLNVIIVINSAIILGNAEIELKKMQ 60
           ++VIQTQIHQEVEEDNIIRG           MTKDRLNVIIVINSAI+LGNAEIELKKMQ
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287

Query: 61  IMLRKMKKEVIPHCF 65
           IMLRKMKK VIPHCF
Sbjct: 288 IMLRKMKKAVIPHCF 302

BLAST of IVF0015446 vs. NCBI nr
Match: KAA0058597.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.21e-16
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 8   IHQEVEEDNIIRGDMTKDRLNVIIVINSAIILGNAEIELKKMQIMLRKMKKEVIPHCF 65
           I  +VE+D I+ G MTKD LNVIIVIN AIILGNAEIE KKMQ ML+ MKK VIPHCF
Sbjct: 95  IRGQVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152

BLAST of IVF0015446 vs. NCBI nr
Match: XP_031737535.1 (uncharacterized protein LOC105435097 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.18e-08
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 23  TKDRLNVIIVINSAIILGNAEIELKKMQIMLRKMKK 58
           TKDRLNVIIVIN AII GNAEIELKKMQIMLRKMKK
Sbjct: 309 TKDRLNVIIVINLAIIHGNAEIELKKMQIMLRKMKK 344

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIB15.8e-2180.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UV403.8e-1274.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0043083.15.22e-2680.00uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa][more]
KAA0058597.15.21e-1674.14retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon p... [more]
XP_031737535.12.18e-0894.44uncharacterized protein LOC105435097 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015446.1IVF0015446.1mRNA