Sequences
The following sequences are available for this feature:
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGGTCGAGCTTCCGGGTTCGGGCGACAGCGGGACGAAACGTGGCTGCTCGACGATGGTTTGCAGGCGGAGGAGATGCGGGTCCGACAAGAGTTTCGCTTGGGAACAGTCGGCAGGGTGGGTCGAGTTTCGATCCACGAAGAATGGTGGCTGGAGAGGCGCAG ACGCGGCGAGTGGTGAACGGAGACGCGGCGAGTGGCGAACGGAGACACGGCGAGTGGCGGCTGCTTGTGAAGGCTCGAATGGGTTACGGCGATCGACAGCAGCGGTCGACGGTGGCGGTAGCCTAG
ATGTACAGGTCGAGCTTCCGGGTTCGGGCGACAGCGGGACGAAACGTGGCTGCTCGACGATGGTTTGCAGGCGGAGGAGATGCGGGTCCGACAAGAGTTTCGCTTGGGAACAGTCGGCAGGGTGGGTCGAGTTTCGATCCACGAAGAATGGTGGCTGGAGAGGCGCAGACGCGGCGAGTGGTGAACGGAGACGCGGCGAGTGGCGAACGGAGACACGGCGAGTGGCGGCTGCTTGTGAAGGCTCGAATGGGTTACGGCGATCGACAGCAGCGGTCGACGGTGGCGGTAGCCTAG
ATGTACAGGTCGAGCTTCCGGGTTCGGGCGACAGCGGGACGAAACGTGGCTGCTCGACGATGGTTTGCAGGCGGAGGAGATGCGGGTCCGACAAGAGTTTCGCTTGGGAACAGTCGGCAGGGTGGGTCGAGTTTCGATCCACGAAGAATGGTGGCTGGAGAGGCGCAGACGCGGCGAGTGGTGAACGGAGACGCGGCGAGTGGCGAACGGAGACACGGCGAGTGGCGGCTGCTTGTGAAGGCTCGAATGGGTTACGGCGATCGACAGCAGCGGTCGACGGTGGCGGTAGCCTAG
MYRSSFRVRATAGRNVAARRWFAGGGDAGPTRVSLGNSRQGGSSFDPRRMVAGEAQTRRVVNGDAASGERRHGEWRLLVKARMGYGDRQQRSTVAVA
Homology
BLAST of IVF0015419 vs. ExPASy TrEMBL
Match:
A0A5D3C9F5 (Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00810 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 45/110 (40.91%), Postives = 54/110 (49.09%), Query Frame = 0
BLAST of IVF0015419 vs. NCBI nr
Match:
TYK07960.1 (retrotransposon protein, putative, Ty1-copia subclass, expressed [Cucumis melo var. makuwa])
HSP 1 Score: 57.4 bits (137), Expect = 4.61e-07
Identity = 45/110 (40.91%), Postives = 54/110 (49.09%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5D3C9F5 1.1e-04 40.91 Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Cucumis melo... [more]
Match Name E-value Identity Description
TYK07960.1 4.61e-07 40.91 retrotransposon protein, putative, Ty1-copia subclass, expressed [Cucumis melo v... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
A T G T A C A G G T C G A G C T T C C G G G T T C G G G C G A C A G C G G G A C G A A A C G T G G C T G C T C G A C G A T G G T T T G C A G G C G G A G G A G A T G C G G G T C C G A C A A G A G T T T C G C T T G G G A A C A G T C G G C A G G G T G G G T C G A G T T T C G A T C C A C G A A G A A T G G T G G C T G G A G A G G C G C A G A C G C G G C G A G T G G T G A A C G G A G A C G C G G C G A G T G G C G A A C G G A G A C A C G G C G A G T G G C G G C T G C T T G T G A A G G C T C G A A T G G G T T A C G G C G A T C G A C A G C A G C G G T C G A C G G T G G C G G T A G C C T A G 50 100 150 200 250 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 22..48
Relationships
The following mRNA feature(s) are a part of this gene:
