IVF0015415 (gene) Melon (IVF77) v1

Overview


Name	IVF0015415
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pro-like protein
Location	chr07: 19459133 .. 19459387 (+)
RNA-Seq Expression	IVF0015415
Synteny	IVF0015415

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGCAAACCGATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTAAAAGATCAATTGACAAAGATTCTAGGTTTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGAACTTCATCACAAGTGGAAGTAGATCGGAACCAAGTACTAGAGGACATGCCTGCATACTCTCCGGGTTTTACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCAACATCCTTTCCTGCGTAA

mRNA sequence

ATGAATGAGCAAACCGATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTAAAAGATCAATTGACAAAGATTCTAGGTTTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGAACTTCATCACAAGTGGAAGTAGATCGGAACCAAGTACTAGAGGACATGCCTGCATACTCTCCGGGTTTTACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCAACATCCTTTCCTGCGTAA

Coding sequence (CDS)

ATGAATGAGCAAACCGATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTAAAAGATCAATTGACAAAGATTCTAGGTTTGCTCACTACTGGAAGAGGAAAGAGTGTTGCGGGAACTTCATCACAAGTGGAAGTAGATCGGAACCAAGTACTAGAGGACATGCCTGCATACTCTCCGGGTTTTACTCCTCAAAGGTCGTCTAGTCCACGCATGGTGGATAGGACATATCCAACATCCTTTCCTGCGTAA

Protein sequence

MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYSPGFTPQRSSSPRMVDRTYPTSFPA

Homology

[Close]

BLAST of IVF0015415 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLTTGRGKSVAGTSSQVEVD NQVLEDMPAY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFP 84
          PGFTPQRSSSPRM DRTYPTSFP
Sbjct: 61 PGFTPQRSSSPRMGDRTYPTSFP 83

[Close]

BLAST of IVF0015415 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.2e-32
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLTTGRGKSV GTSSQVEVD NQVLEDMP Y 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVVGTSSQVEVDLNQVLEDMPTYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 85
          PGFTPQRSSSPRM DRTYPTSFPA
Sbjct: 61 PGFTPQRSSSPRMGDRTYPTSFPA 84

[Close]

BLAST of IVF0015415 vs. ExPASy TrEMBL
Match: A0A5A7TXF2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001530 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.2e-32
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLTTGRGKSVAGTSSQVEVD NQVLEDMPAY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 85
          PGFTPQRSSSPRM D TYPTSFPA
Sbjct: 61 PGFTPQRSSSPRMGDITYPTSFPA 84

[Close]

BLAST of IVF0015415 vs. ExPASy TrEMBL
Match: A0A5D3CYF0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003390 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.1e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS
Sbjct: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60

Query: 61 PGFTPQRSSSPRM 74
          PGFTPQRSSSPRM
Sbjct: 61 PGFTPQRSSSPRM 73

[Close]

BLAST of IVF0015415 vs. ExPASy TrEMBL
Match: A0A5D3CY34 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00410 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.0e-31
Identity = 74/84 (88.10%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAV QDVEGLKDQL KIL LLTTGRGKSVAG SSQVEVD NQVLEDMP Y 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPVYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 85
          PGF PQRSSSPRMVDRTYPTSFPA
Sbjct: 61 PGFIPQRSSSPRMVDRTYPTSFPA 84

[Close]

BLAST of IVF0015415 vs. NCBI nr
Match: KAA0046607.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (366), Expect = 1.67e-41
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLTTGRGKSVAGTSSQVEVD NQVLEDMPAY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 84
          PGFTPQRSSSPRM D TYPTSFPA
Sbjct: 61 PGFTPQRSSSPRMGDITYPTSFPA 84

[Close]

BLAST of IVF0015415 vs. NCBI nr
Match: KAA0056366.1 (uncharacterized protein E6C27_scaffold186G001020 [Cucumis melo var. makuwa] >TYK29149.1 uncharacterized protein E5676_scaffold120G003010 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 7.31e-41
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQ+QAVRQDVEGLKDQL KIL  LTTGRGKSV GTSSQVEVD N+VLEDMPAY 
Sbjct: 1  MDEQTNDQIQAVRQDVEGLKDQLAKILESLTTGRGKSVTGTSSQVEVDLNEVLEDMPAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 84
          PGFTPQRSS P M+DRTYPTSFPA
Sbjct: 61 PGFTPQRSSGPCMMDRTYPTSFPA 84

[Close]

BLAST of IVF0015415 vs. NCBI nr
Match: TYK15864.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 2.68e-40
Identity = 74/84 (88.10%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAV QDVEGLKDQL KIL LLTTGRGKSVAG SSQVEVD NQVLEDMP Y 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPVYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 84
          PGF PQRSSSPRMVDRTYPTSFPA
Sbjct: 61 PGFIPQRSSSPRMVDRTYPTSFPA 84

[Close]

BLAST of IVF0015415 vs. NCBI nr
Match: KAA0045606.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK02651.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 2.43e-39
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAV QDVEGL+DQL KIL LLTTGRGK+VAGTSSQVEVD NQVLEDM AY 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFP 83
          PGFTPQRSSSPRMVDRTYPTSFP
Sbjct: 61 PGFTPQRSSSPRMVDRTYPTSFP 83

[Close]

BLAST of IVF0015415 vs. NCBI nr
Match: XP_008452348.1 (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo] >KAA0060506.1 Gag-pro-like protein [Cucumis melo var. makuwa] >TYK00746.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 9.06e-39
Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MNEQTDDQVQAVRQDVEGLKDQLTKILGLLTTGRGKSVAGTSSQVEVDRNQVLEDMPAYS 60
          M+EQT+DQVQAVRQDVEGLKDQL KIL LLTTGRGKSVAGTSSQVEVD NQVLED+ AY 
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61 PGFTPQRSSSPRMVDRTYPTSFPA 84
          P FTPQR SSPRMVDRTYPTSFPA
Sbjct: 61 PSFTPQRPSSPRMVDRTYPTSFPA 84

The following BLAST results are available for this feature:

BLAST of IVF0015415 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015415 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V681	2.5e-32	91.57	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VAU5	7.2e-32	89.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXF2	7.2e-32	90.48	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114...	[more]
A0A5D3CYF0	6.1e-31	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CY34	8.0e-31	88.10	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637...	[more]

BLAST of IVF0015415 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046607.1	1.67e-41	90.48	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0056366.1	7.31e-41	84.52	uncharacterized protein E6C27_scaffold186G001020 [Cucumis melo var. makuwa] >TYK...	[more]
TYK15864.1	2.68e-40	88.10	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0045606.1	2.43e-39	87.95	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK02651.1 Gag-pro-like protein...	[more]
XP_008452348.1	9.06e-39	88.10	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo] >KAA0060506.1 Gag...	[more]

BLAST of IVF0015415 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015415.1	IVF0015415.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity