IVF0015390 (gene) Melon (IVF77) v1

Overview


Name	IVF0015390
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	chr12: 16519712 .. 16520125 (-)
RNA-Seq Expression	IVF0015390
Synteny	IVF0015390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATGCCGTCACTGCTCCAAGTTTATCTACACCAGGTTTTTCGAATTCTCTCCTAAACCAAGTTTTAAATCATCTGACTACTGTCAAGCTTGATAAAAACAACTACCTATCGAGGAAAACCCTTGCTCTCCCAACCCTCAAAGGCTACAAGCTTGAGAGACATCTCACCGGAGAAACGCCATGCCCATCAAAATTGGTCTTGTCGGCGTCTAGCTCAAACACTACCATGACTGAAGAAGGAGCAAACGCAACTGTCAAAGCTTCAAGTTCGTCCATCCTTCAGACCATGAATCCTTTGTTTAAATAGTGGGTGACTACTGATTTTCTGCTGCTCGGATGGCTTTACAATTCCATGACGCCTAATGTAGCCATTCAATTGATGGGATTTACAAATTCTAAGGACTTATAG

mRNA sequence

ATGGTTGATGCCGTCACTGCTCCAAGTTTATCTACACCAGGTTTTTCGAATTCTCTCCTAAACCAAGTTTTAAATCATCTGACTACTGTCAAGCTTGATAAAAACAACTACCTATCGAGGAAAACCCTTGCTCTCCCAACCCTCAAAGGCTACAAGCTTGAGAGACATCTCACCGGAGAAACGCCATGCCCATCAAAATTGGTCTTGTCGGCGTCTAGCTCAAACACTACCATGACTGAAGAAGGAGCAAACGCAACTTGGGTGACTACTGATTTTCTGCTGCTCGGATGGCTTTACAATTCCATGACGCCTAATGTAGCCATTCAATTGATGGGATTTACAAATTCTAAGGACTTATAG

Coding sequence (CDS)

ATGGTTGATGCCGTCACTGCTCCAAGTTTATCTACACCAGGTTTTTCGAATTCTCTCCTAAACCAAGTTTTAAATCATCTGACTACTGTCAAGCTTGATAAAAACAACTACCTATCGAGGAAAACCCTTGCTCTCCCAACCCTCAAAGGCTACAAGCTTGAGAGACATCTCACCGGAGAAACGCCATGCCCATCAAAATTGGTCTTGTCGGCGTCTAGCTCAAACACTACCATGACTGAAGAAGGAGCAAACGCAACTTGGGTGACTACTGATTTTCTGCTGCTCGGATGGCTTTACAATTCCATGACGCCTAATGTAGCCATTCAATTGATGGGATTTACAAATTCTAAGGACTTATAG

Protein sequence

MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKLVLSASSSNTTMTEEGANATWVTTDFLLLGWLYNSMTPNVAIQLMGFTNSKDL

Homology

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BLAST of IVF0015390 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 91/130 (70.00%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN L TVKLD+ NYL  KTLALP LKGYKLE HLTGETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 120
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 91/130 (70.00%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN L TVKLD+ NYL  KTLALP LKGYKLE HLTGETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 120
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. ExPASy TrEMBL
Match: A0A5A7TIN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00010 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGE 60
          MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGE
Sbjct: 1  MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGE 60

Query: 61 TPCPSKLVLSASSSNTTMTEEGANAT 87
          TPCPSKLVLSASSSNTTMTEEGANAT
Sbjct: 61 TPCPSKLVLSASSSNTTMTEEGANAT 86

[Close]

BLAST of IVF0015390 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 90/130 (69.23%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN LTTVKLD+ NYL  KTLALP LK YKLE HLT ETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 120
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 90/130 (69.23%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN LTTVKLD+ NYL  KTLALP LK YKLE HLT ETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 120
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. NCBI nr
Match: KAA0043233.1 (hypothetical protein E6C27_scaffold110G001150 [Cucumis melo var. makuwa] >TYK29297.1 hypothetical protein E5676_scaffold129G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 2.81e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGE 60
          MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGE
Sbjct: 1  MVDAVTAPSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGE 60

Query: 61 TPCPSKLVLSASSSNTTMTEEGANAT 86
          TPCPSKLVLSASSSNTTMTEEGANAT
Sbjct: 61 TPCPSKLVLSASSSNTTMTEEGANAT 86

[Close]

BLAST of IVF0015390 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (432), Expect = 7.82e-50
Identity = 91/130 (70.00%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN L TVKLD+ NYL  KTLALP LKGYKLE HLTGETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 119
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (432), Expect = 9.99e-49
Identity = 91/130 (70.00%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN L TVKLD+ NYL  KTLALP LKGYKLE HLTGETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 119
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 167 bits (424), Expect = 1.42e-48
Identity = 90/130 (69.23%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN LTTVKLD+ NYL  KTLALP LK YKLE HLT ETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 119
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

[Close]

BLAST of IVF0015390 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 167 bits (424), Expect = 3.97e-48
Identity = 90/130 (69.23%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 8   PSLSTPGFSNSLLNQVLNHLTTVKLDKNNYLSRKTLALPTLKGYKLERHLTGETPCPSKL 67
           PSLS+ GFSN  LNQ+LN LTTVKLD+ NYL  KTLALP LK YKLE HLT ETPCPS  
Sbjct: 11  PSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHF 70

Query: 68  VLSASSSNTTMTEEGANAT------------------WVTTDFLLLGWLYNSMTPNVAIQ 119
           VLSASSSNTT+TEEGA+AT                  WVTTD LLLGWLYNSMTP+VAIQ
Sbjct: 71  VLSASSSNTTVTEEGADATIGASSSITPRIVNPLFEQWVTTDLLLLGWLYNSMTPDVAIQ 130

The following BLAST results are available for this feature:

BLAST of IVF0015390 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIT7	1.5e-38	70.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCH9	1.5e-38	70.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TIN2	2.5e-38	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E1U9	1.2e-37	69.23	uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E1U6	1.2e-37	69.23	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of IVF0015390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043233.1	2.81e-51	100.00	hypothetical protein E6C27_scaffold110G001150 [Cucumis melo var. makuwa] >TYK292...	[more]
TYJ96311.1	7.82e-50	70.00	uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]	[more]
KAA0026100.1	9.99e-49	70.00	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]
XP_016902205.1	1.42e-48	69.23	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]
XP_016902204.1	3.97e-48	69.23	PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]	[more]

BLAST of IVF0015390 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015390.2	IVF0015390.2	mRNA