IVF0015289 (gene) Melon (IVF77) v1

Overview


Name	IVF0015289
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CCHC-type domain-containing protein
Location	chr08: 25291884 .. 25292234 (+)
RNA-Seq Expression	IVF0015289
Synteny	IVF0015289

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACTGCAAAACAAGTGTGGGAAGCGCTACAAAAGAAGTACGATACTGAAGAAGCAGGGTCAAAGAAGTACGCTGTCAGCCGATACTTGAGATATCAAATGACTGATGACAGATCTGTGGAGGCACAGTCACATGAAATCCAGAAAATAGCTCACGAGATTATCAATGAAGGTATGCCACTCGATGATCAATTCCAAGTTACTATTATTATTGATAAATTACCTCTACTGTGGAAGGATTTCAAGAACACTCTAAGGCACAAAACCAAAGAGTTCTCACTAGAAAACCTAATCACGAGGCTAAAGATAGAGGAGGAAGCAAAGAAGCGTGATAAAAAAAAGAGGTGA

mRNA sequence

ATGACTACTGCAAAACAAGTGTGGGAAGCGCTACAAAAGAAGTACGATACTGAAGAAGCAGGGTCAAAGAAGTACGCTGTCAGCCGATACTTGAGATATCAAATGACTGATGACAGATCTGTGGAGGCACAGTCACATGAAATCCAGAAAATAGCTCACGAGATTATCAATGAAGGTATGCCACTCGATGATCAATTCCAAGTTACTATTATTATTGATAAATTACCTCTACTGTGGAAGGATTTCAAGAACACTCTAAGGCACAAAACCAAAGAGTTCTCACTAGAAAACCTAATCACGAGGCTAAAGATAGAGGAGGAAGCAAAGAAGCGTGATAAAAAAAAGAGGTGA

Coding sequence (CDS)

ATGACTACTGCAAAACAAGTGTGGGAAGCGCTACAAAAGAAGTACGATACTGAAGAAGCAGGGTCAAAGAAGTACGCTGTCAGCCGATACTTGAGATATCAAATGACTGATGACAGATCTGTGGAGGCACAGTCACATGAAATCCAGAAAATAGCTCACGAGATTATCAATGAAGGTATGCCACTCGATGATCAATTCCAAGTTACTATTATTATTGATAAATTACCTCTACTGTGGAAGGATTTCAAGAACACTCTAAGGCACAAAACCAAAGAGTTCTCACTAGAAAACCTAATCACGAGGCTAAAGATAGAGGAGGAAGCAAAGAAGCGTGATAAAAAAAAGAGGTGA

Protein sequence

MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKKR

Homology

[Close]

BLAST of IVF0015289 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.4e-55
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 116
           PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 204

[Close]

BLAST of IVF0015289 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 116
           PLDDQFQVTIIIDKL LLWKDFKNTLRHKTKEFSLENL TRL+IEEEAKK DKK+
Sbjct: 150 PLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKE 204

[Close]

BLAST of IVF0015289 vs. ExPASy TrEMBL
Match: A0A5A7UYY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00440 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAK+VW+ALQKKYDTEEAGSKKYAVSRYLRYQMTDD+SVEAQSHEIQKIAHEII+EGM
Sbjct: 94  MTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMTDDKSVEAQSHEIQKIAHEIISEGM 153

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRD 113
           PLDDQFQV +IIDKLP LWKDFKNTLRHKTKEFSLE+LITRL+IEEEA+K D
Sbjct: 154 PLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEARKHD 205

[Close]

BLAST of IVF0015289 vs. ExPASy TrEMBL
Match: A0A5D3CPF2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001350 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.9e-48
Identity = 101/115 (87.83%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAK+VW+ LQKKYDTEEA SKKYAVSRYLRYQMTDDR VEAQSHEIQKIAHEII+EGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 116
           PLDDQFQV +IIDKLPLLWKDFKNTLR+KTKEFSLE+LITRL+IEEEA+K DKK+
Sbjct: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKKE 115

[Close]

BLAST of IVF0015289 vs. ExPASy TrEMBL
Match: A0A5D3DC59 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00340 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.7e-47
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTT K+VW+ALQKKYDT+EA SKKYAVSRYLRYQMTDD+SVE QSHEIQKIAHEII+EGM
Sbjct: 94  MTTGKEVWDALQKKYDTKEARSKKYAVSRYLRYQMTDDKSVETQSHEIQKIAHEIISEGM 153

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 116
           PLDDQFQV +IIDKLP LWKDFKNTLRHKTKEFSLE+LITRLKIEEEA+K DKK+
Sbjct: 154 PLDDQFQVAVIIDKLPQLWKDFKNTLRHKTKEFSLESLITRLKIEEEARKHDKKE 208

[Close]

BLAST of IVF0015289 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 5.35e-67
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 115
           PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK
Sbjct: 150 PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKK 204

[Close]

BLAST of IVF0015289 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (535), Expect = 3.90e-63
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM
Sbjct: 90  MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 149

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKK 114
           PLDDQFQVTIIIDKL LLWKDFKNTLRHKTKEFSLENL TRL+IEEEAKK DKK
Sbjct: 150 PLDDQFQVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKK 203

[Close]

BLAST of IVF0015289 vs. NCBI nr
Match: KAA0060458.1 (uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK18543.1 uncharacterized protein E5676_scaffold119G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 8.26e-63
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAK+VW+ALQKKYDTEEAGSKKYAVSRYLRYQMTDD+SVEAQSHEIQKIAHEII+EGM
Sbjct: 94  MTTAKEVWDALQKKYDTEEAGSKKYAVSRYLRYQMTDDKSVEAQSHEIQKIAHEIISEGM 153

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRD 112
           PLDDQFQV +IIDKLP LWKDFKNTLRHKTKEFSLE+LITRL+IEEEA+K D
Sbjct: 154 PLDDQFQVVVIIDKLPPLWKDFKNTLRHKTKEFSLESLITRLRIEEEARKHD 205

[Close]

BLAST of IVF0015289 vs. NCBI nr
Match: KAA0049683.1 (uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa] >TYK12189.1 uncharacterized protein E5676_scaffold106G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (501), Expect = 1.61e-60
Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAK+VW+ LQKKYDTEEA SKKYAVSRYLRYQMTDDR VEAQSHEIQKIAHEII+EGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARSKKYAVSRYLRYQMTDDRFVEAQSHEIQKIAHEIISEGM 60

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKK 114
           PLDDQFQV +IIDKLPLLWKDFKNTLR+KTKEFSLE+LITRL+IEEEA+K DKK
Sbjct: 61  PLDDQFQVVVIIDKLPLLWKDFKNTLRYKTKEFSLESLITRLRIEEEARKHDKK 114

[Close]

BLAST of IVF0015289 vs. NCBI nr
Match: KAA0065758.1 (uncharacterized protein E6C27_scaffold37G00490 [Cucumis melo var. makuwa] >TYK13782.1 uncharacterized protein E5676_scaffold488G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (482), Expect = 1.55e-59
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MTTAKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGM 60
           MTTAK+VW+ LQKKYDTE AGSKKYAVSRYLRYQMTDD+ VEA SHEIQKIAHEII++GM
Sbjct: 1   MTTAKEVWDKLQKKYDTEGAGSKKYAVSRYLRYQMTDDKYVEALSHEIQKIAHEIISDGM 60

Query: 61  PLDDQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKK 114
           PLDDQFQV +IIDKLPLLWKDFKN LRHKTKEFSLE+LI RL+IEEEA+K DKK
Sbjct: 61  PLDDQFQVAVIIDKLPLLWKDFKNILRHKTKEFSLESLIMRLRIEEEARKHDKK 114

[Close]

BLAST of IVF0015289 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 6.2e-10
Identity = 37/111 (33.33%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 4   AKQVWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLD 63
           AK++W+ L+  Y  +E+ SK+  V +Y+ ++M ++R +  Q     KIA  I++ GM LD
Sbjct: 283 AKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLD 342

Query: 64  DQFQVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKK 115
           + F V+ II K P  W+ F   L  + +   +  L+ R+K EEE  +   K
Sbjct: 343 EAFHVSTIISKFPPSWRGFCTRLMEE-EYLPVWMLMERVKAEEELLRNGAK 392

The following BLAST results are available for this feature:

BLAST of IVF0015289 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015289 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDS3	8.4e-55	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UA92	1.1e-51	95.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UYY4	1.2e-48	90.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CPF2	9.9e-48	87.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DC59	1.7e-47	86.96	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]

BLAST of IVF0015289 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98000.1	5.35e-67	100.00	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]
KAA0050409.1	3.90e-63	96.49	hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]	[more]
KAA0060458.1	8.26e-63	90.18	uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0049683.1	1.61e-60	88.60	uncharacterized protein E6C27_scaffold76G00220 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0065758.1	1.55e-59	85.09	uncharacterized protein E6C27_scaffold37G00490 [Cucumis melo var. makuwa] >TYK13...	[more]

BLAST of IVF0015289 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.2e-10	33.33	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..115
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..111 e-value: 1.7E-19 score: 70.0
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 2..115
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015289.2	IVF0015289.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding