IVF0015227 (gene) Melon (IVF77) v1

Overview


Name	IVF0015227
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosomal RNA-processing protein 40
Location	chr02: 22309572 .. 22313819 (-)
RNA-Seq Expression	IVF0015227
Synteny	IVF0015227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAGGTTAAAAAAGTGATCCCGTGAAATTTAATTTTCCCCTAATAAATTCTCAAAACAATTCGTTCTGCACTTGTTCGCGCGTATTACTTCTCTCTTTCGTGTTCATCGCTCACCATTCTTCTGATCGCCGCTTGCAAGTACAAGATTTCTTTTACTTGTATCCGCAGCAATGGTTGAAAAGCCCTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTAAGTTTGGAATTAACCTCATCCGTTCGATGTTCTGCAGTTTCTTAATGTATTGGAGAATTCAGGCATTTTTGTTGGAATGTAAAATTGTTTAGGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGACCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGGCTCCTAGGGTTTTCTTTCTTTCAATGTTTATGCTTCTATTATATGTTTCTGCTTTTCAACACCCATTAGTTTTCATTTGCAGTTGTGTTGTTTACAAGATTTCTTAATTTCATGTTTTTTTTTAAAATAATCTTTCAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTTAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTAGGTAAATGACATTGTTCAAATTGGCATTGAGGATCCTTATGTTGTTTTTTCTTTCAGCTATCTTTTGAATTGTGATCTTCAACGCTAGTTTCGGGGGCTTTCTTTAATCGAATTGCTAGCATTTTCATCCTGACGTTTACTTTTTATATAATTTGCTGTTTTCCAGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTGCTTGACTCTAGAGCCGACGTAAGTGCTGCTTTATTGTTAAAACATGTATACGTTCAATTATGAAATGATTGGCCCATGCTGTTTCCGATTGTCGTGTGTGGATGGTATGGTTTGACTGGTATCCACATACGCTATCGTTGAGGGAAATAAAAGAATATATAAGGGAAAGGGTGCCTGGCCCTAGCTACAGAAAAAGACTCCAAACCATAAGAACAAGACCAAGCTCGTAATTACAAAAAAGTTTTAGTCGCTAATCTCCACAAATAGGCGTTAAACATAGCTTCCTCCCAAACTTTCTTGCCAGATCGCCCAATCTCTCTACAAATCTAATATGCATTTCATCCAAATGTCACAAAAGTACAAAGAAAGTAGCAGGCCACAAAACTTTGCCCTTCTCCTTGTAGGGAGGAGGATTTAGAAGCACTTCCTACAGCAAAACCTTGCCATATGGCCCATATCTAATTTGAACCGGACAAACACCAAGTAATTTTATTCAGCGACTCCGAAGGTAGTGAGCAAACTAATCCCATAAAAATTGATCTAGGTCCTCCTCCTGCCTTCTGCAAAAATGCACCTTTGCGAGGGTATCCATGTCTAATTAGTCCTGTGATACTAGGGAAGATTTAGGTAAACATCAACTTGTTTTTATCAACGATTCAACTGTTTATGTTAATAGTTTATGCAGATTATTCAAGTGCTCCCTTCTGTGAGAACCCTCGAAATAAATATGAGACCTGAAACCAAATACCAAATGAATACCCTTTCCTCTCTCAGACTTGCCCTTATAGAAGGCTATCCACGTGCAAAGAACACACTCAATGCACTCTCTACCTAACTCTAACTGTAACACCTAGGCTCCACGAAGTCACAGCAGACGTGCACCCAAAAAAATATCACAAAGATGCTCATTCCTCACATACAACAATATCTGTAGGCTTCTCTATTTTCTCTTTCTTATTTCTATGTGTATAAACCTTGGGAAGTTGGAGTCTGTTAGATTTTTGTTCGATTACCTTTTAAGTTATCATCATTTAATTATTTCTTTTCCCGTTTGCAGAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGGTATGCATAATTTTTTACATAATTTTGTTATTTTCACTATATGACCTTTCGATATAGTTGCTCCTGTCTTCCTTTTTTAGAAGTTTTATACTTTGTCAGTTCATGTATTATCCACGAGAGGTTCTGCTTGAGTGTGTTTTTTTCCCATTTTTATTGGGTCCTAGTGGGGGTGCAGGGAGTGGTTAAGAATTATACTTCTGTAGTAAAAGGTGTACTATTTTACCTTTTGTTGGCTTATTTTCCTTTGCAATCTATATATCCTATATTCCAAGTGTATTTGGTCCTTAAACATGTCCTATTGATTCTCTGTTTCATAGATGGGTGCCCTGCTTTATGTGCGCGTAGTGAAGGTAAACCCTGGAATGAATCCTGAGTTGGCATGCACTGATGGTTAGTTAACTTCTTCATATCTCCACGTTCAATAAACTTTTCGAAGGTTTAAAACAGTCTCCACCAAAGAAATATATTGATGTTCACGTAAACTCATCATCTGAAGAGGGGTGGGCAGCATCTGCGTTCTCCATGCAAGTGCGTTTTTCTTTTTCGGTTTTTGGTTGTTGCGATAATATGTCTCACGTGAGTATCATTTTGTTCTGTGTAGCAAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTTCATGTTTGAGTGTTCAACTGGCTTATCAAGAATGTAAGCTAAATTGCTTTTCTTAATTTTTTTTCCCTTTCTTCTGATCATTAATTCTCATTGATTATCCTCTCTTCTAGGCTTCTAAGTTCTCCCCCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAATTGGTTTAAATGGCCGCGTTTGGGTACTTTTCTTCAATCCTTACATTTTCAATGCTAAACACTATGGGTTTGCTATGCATAATTCTCTTCCCATACTTCCTTCTAGCACACATTAACCTTCTATTTATTGAAGAAAAATTTTCCTCATCTGACAGTTATATCTAGTTGTTGGAAACTTGGGATTATTACTCCATTCTTCATCTTCTCCTTTCAATCTCTAATATAACGCTTCTTTGAAACTTGAATATGTAATTTCCGGGTAAAAAACCACTTTTGGTCTTGAATTTTGCAATAATTTAATCCTTAAACTTAATCCTTAAACTTAGTAACAATTTAGTCCCTATACTTTAATAAGAACCGATTAAGTCATTGTTGTGAAAAATACGATAAGCCTTAGTCTCAATTTTATTTATCAACAACGGTGAGGGAAGGATTCAAGAGCTTCCTATCTTTCTGCAAGGAGACCTAAAACAACGGTGAGGGAAGGATTCAAGAGCTTCCTATCTTTCTGCAAGGAGACCTAATACAAGACAATTTCCAAAAAGCTGCCCTCCCCAAATAACCAAAACAATATTTATACTTGTACGTAAAGCATCACGGCCCCCTAACTAACAGTATTCCCGGGGCCCATATTTACGACTTCCTTACCTTCTCCTTCTCTTGCATACAAGCCTACATTTTTACTATGGGTGGCCTAACAAAATATAAGTAAGATTTTATGAAATTGGGAATCAAATTTATGTATAAACTATAATAAGTTATGTAATAAATATCAACAATTTTCACGAAGTTTTTTACGATAATGGACTAAACCTTTACCAAGGGTAAAGTATTAGGACTAAATCACTCTTTACTAACATCTGGTGACTTGTTATTTTCATGAAAGTTGAAGGACCGAAAGTGTTTTTTTTTAACCAAATTTATTCTACCAATCTTACTAATAAACAGCCCTTTCTTACTTTTGACATCTCCATCTCTTCTTCCAGGTCAATGCTGATTCTCCGTCTACAATCATTGTTGTTTCAAATGCAATATTGAACTCCGAAACTCTGTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCTTGCCAATTTAAAGCTGTCAAGTTAAAATTCTAATTTATAGTCATGTATTATTTAACTCAAGTCTTACGAAAACAGTAACCAAATTTTTTCTTCTCTTTGAAATTGAGAAAGATTCACGATTTAATTGTATTCATTAGCTCTCAAGTAAAATGGCTATTTGGTCTACTTGTTAAGGAGTTATTGGCCCCGAAAAAGAATTAAAGATAGTGTGTGGATCAAATTTTCATAATTCTATTTGTTTAGCAGATGTACCTGAAGGGAAAGAAGAGCAGACATACTCCAAATTTAATTTTGTTAAATTGTTCGATGTCAATTGTATCAGAATATTGAACCACTGTGGATCTGTTTAGGAGTCAT

mRNA sequence

CTTAGGTTAAAAAAGTGATCCCGTGAAATTTAATTTTCCCCTAATAAATTCTCAAAACAATTCGTTCTGCACTTGTTCGCGCGTATTACTTCTCTCTTTCGTGTTCATCGCTCACCATTCTTCTGATCGCCGCTTGCAAGTACAAGATTTCTTTTACTTGTATCCGCAGCAATGGTTGAAAAGCCCTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGACCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTTAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGATGGGTGCCCTGCTTTATGTGCGCGTAGTGAAGGTAAACCCTGGAATGAATCCTGAGTTGGCATGCACTGATGCAAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTTCATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCCCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAATTGGTTTAAATGGCCGCGTTTGGGTCAATGCTGATTCTCCGTCTACAATCATTGTTGTTTCAAATGCAATATTGAACTCCGAAACTCTGTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCTTGCCAATTTAAAGCTGTCAAGTTAAAATTCTAATTTATAGTCATGTATTATTTAACTCAAGTCTTACGAAAACAGTAACCAAATTTTTTCTTCTCTTTGAAATTGAGAAAGATTCACGATTTAATTGTATTCATTAGCTCTCAAGTAAAATGGCTATTTGGTCTACTTGTTAAGGAGTTATTGGCCCCGAAAAAGAATTAAAGATAGTGTGTGGATCAAATTTTCATAATTCTATTTGTTTAGCAGATGTACCTGAAGGGAAAGAAGAGCAGACATACTCCAAATTTAATTTTGTTAAATTGTTCGATGTCAATTGTATCAGAATATTGAACCACTGTGGATCTGTTTAGGAGTCAT

Coding sequence (CDS)

ATGGTTGAAAAGCCCTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGACCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTTAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGATGGGTGCCCTGCTTTATGTGCGCGTAGTGAAGGTAAACCCTGGAATGAATCCTGAGTTGGCATGCACTGATGCAAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTTCATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCCCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAATTGGTTTAAATGGCCGCGTTTGGGTCAATGCTGATTCTCCGTCTACAATCATTGTTGTTTCAAATGCAATATTGAACTCCGAAACTCTGTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCTTGCCAATTTAAAGCTGTCAAGTTAA

Protein sequence

MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPVLESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLKLSS

Homology

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BLAST of IVF0015227 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-45
Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0


Query: 11  TLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNK-YWVESSQ 70
           TL DQ VVPGDV+  + ++    +++G GL Q +D +  +K G LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 71  KRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVR 130
           KRYVP  ED V+G +++  A++F VDI     A L   +FEG T+ N P   +G L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 122

Query: 131 VVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPVLESLGKKLS 190
           V   N  M PE+ C     KA GFG L  G+M  CS GLS  LLS   C +L+ LGK + 
Sbjct: 123 VTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCFLLQILGKHIP 182

Query: 191 FETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLA 238
           +E A+G+NGRVW+N+ S    IVVSN I NS+ +   Q    + K L+
Sbjct: 183 YEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQYIQDDQIEPFILKSLS 226

[Close]

BLAST of IVF0015227 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-39
Identity = 89/234 (38.03%), Postives = 137/234 (58.55%), Query Frame = 0


Query: 7   SSSSTLVDQPVVPGDVVLDLSNMT-NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWV 66
           S++ST+    V+PG+ +  +  +  ++ + LG GLR+  D +  SK G LR  +P  +WV
Sbjct: 2   SATSTI----VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWV 61

Query: 67  ESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGAL 126
           ++ Q+RY+P   D +LGIV     D + VDI     A +  LAFE  +++N P    G L
Sbjct: 62  DNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDL 121

Query: 127 LYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPVLESLG 186
           +Y RV+  +  + PEL C ++ GK+   G+L DGF F+CS  L RMLL    CPVL +L 
Sbjct: 122 IYARVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALT 181

Query: 187 KKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANL 240
           ++L +E A+G+NGR+W+ A S    + ++NAI   E  SG  +   +DK+  NL
Sbjct: 182 RELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQ-SGCAE---IDKICGNL 226

[Close]

BLAST of IVF0015227 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-37
Identity = 88/255 (34.51%), Postives = 139/255 (54.51%), Query Frame = 0


Query: 8   SSSTLVDQPVVPGDVV--------------------LDLSNMTNETIKLGGGLRQDQDAI 67
           ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D +
Sbjct: 19  AARTVLDQVVLPGEELLLPDQEDGDGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGDRL 78

Query: 68  SVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSL 127
            V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   
Sbjct: 79  LVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEP 138

Query: 128 AFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGF 187
           A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG 
Sbjct: 139 ASLSYLAFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGL 198

Query: 188 MFECSTGLSRMLLSSPPCPVLESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNS 236
           +F+ + GL R LL +P C +L+ +GK    E   G+NGR+WV A +    ++++N +   
Sbjct: 199 LFKVTLGLIRKLL-APDCEILQEVGKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEAC 258

[Close]

BLAST of IVF0015227 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36
Identity = 81/205 (39.51%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 37  GGGLRQDQDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVLDSRADN 96
           G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D 
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDI 127

Query: 97  FLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAA 156
           F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A 
Sbjct: 128 FKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVVANKDMEPEMVCIDSCGRAN 187

Query: 157 GFGLL-KDGFMFECSTGLSRMLLSSPPCPVLESLGKKLSFETAIGLNGRVWVNADSPSTI 216
           G G++ +DG +F+ + GL R LL +P C +++ LGK    E   G+NGR+WV A +    
Sbjct: 188 GMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQT 247

Query: 217 IVVSNAILNSETLSGVQQRIMVDKL 236
           ++++N +   E ++  Q++ +  +L
Sbjct: 248 LILANVLEACEHMTTEQRKQIFARL 271

[Close]

BLAST of IVF0015227 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 152.5 bits (384), Expect = 6.0e-36
Identity = 79/206 (38.35%), Postives = 121/206 (58.74%), Query Frame = 0


Query: 37  GGGLRQDQDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRAD 96
           G GLR+  D + V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGD 127

Query: 97  NFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKA 156
            F VD+ G   A L  L+FEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A
Sbjct: 128 IFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDSCGRA 187

Query: 157 AGFGLL-KDGFMFECSTGLSRMLLSSPPCPVLESLGKKLSFETAIGLNGRVWVNADSPST 216
            G G++ +DG +F+ + GL R LL +P C +++ +GK    E   G+NGR+WV A +   
Sbjct: 188 NGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGKLYPLEIVFGMNGRIWVKAKTIQQ 247

Query: 217 IIVVSNAILNSETLSGVQQRIMVDKL 236
            ++++N +   E ++  Q++ +  +L
Sbjct: 248 TLILANILEACEHMTSDQRKQIFSRL 272

[Close]

BLAST of IVF0015227 vs. ExPASy TrEMBL
Match: A0A5D3BFK9 (Ribosomal RNA-processing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001380 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 8.0e-132
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK
Sbjct: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. ExPASy TrEMBL
Match: A0A1S3CNB3 (Ribosomal RNA-processing protein 40 OS=Cucumis melo OX=3656 GN=LOC103502403 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 8.0e-132
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK
Sbjct: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.4e-130
Identity = 239/243 (98.35%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETA+GLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 9.4e-125
Identity = 229/243 (94.24%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNM NET+KLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LES GKKLSFETA+GLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKLL NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. ExPASy TrEMBL
Match: A0A6J1ECW1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111433176 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 227/243 (93.42%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSS LVDQPVVPGDVVLDLSNMTNETIKLGGGLRQD DAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIV+DSR+DNFLVDIKGPSLA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG++F+CSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETA+G+NGRVWVNADSPST IVVSNAI+NSETLSGVQQRIMVDKLL NLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. NCBI nr
Match: XP_008464560.1 (PREDICTED: putative exosome complex component rrp40 [Cucumis melo] >KAA0057849.1 putative exosome complex component rrp40 [Cucumis melo var. makuwa] >TYJ98532.1 putative exosome complex component rrp40 [Cucumis melo var. makuwa])

HSP 1 Score: 478 bits (1230), Expect = 5.59e-170
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK
Sbjct: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 243
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. NCBI nr
Match: XP_004138110.1 (putative exosome complex component rrp40 isoform X1 [Cucumis sativus])

HSP 1 Score: 471 bits (1213), Expect = 2.18e-167
Identity = 239/243 (98.35%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETA+GLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 243
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. NCBI nr
Match: XP_038878675.1 (putative exosome complex component rrp40 [Benincasa hispida])

HSP 1 Score: 456 bits (1172), Expect = 3.88e-161
Identity = 230/243 (94.65%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVD PVVPGDVVLDLSNM NETIKLG GLRQDQD ISVSKVGKLR SKP
Sbjct: 1   MVEKPSSSSSTLVDHPVVPGDVVLDLSNMANETIKLGSGLRQDQDVISVSKVGKLRLSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSL FLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLGFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CP+
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPI 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LESLGKKLSFETA+GLNGRVWVNA+SPST IVVSNAILNSETLSGVQQRIMVDKLL NLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNAESPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 243
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455 bits (1171), Expect = 5.52e-161
Identity = 230/243 (94.65%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LES GKKLSFETA+GLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKLL NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 243
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. NCBI nr
Match: XP_022921727.1 (putative exosome complex component rrp40 [Cucurbita moschata])

HSP 1 Score: 454 bits (1169), Expect = 1.11e-160
Identity = 229/243 (94.24%), Postives = 234/243 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNM NET+KLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           EMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDG+MFECSTGLSRMLLSSP CPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240
           LES GKKLSFETA+GLNGRVWVNADSPST IVVSNAILNSETLSGVQQRIMVDKLL NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 243
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of IVF0015227 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 352.8 bits (904), Expect = 2.2e-97
Identity = 172/234 (73.50%), Postives = 197/234 (84.19%), Query Frame = 0


Query: 6   SSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWV 65
           S+S ++L+DQ VVPGDVVLDLSNMTN+TIKLG GLRQD + ISV + GKLR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 66  ESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGAL 125
           ESS KRYVP  ED VLGIV+D + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 126 LYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPVLESLG 185
           LY RVVK N GMNPEL+C D SGKAAGFG LKDGFMFE STGLSRMLLSSP CPVLE+LG
Sbjct: 126 LYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALG 185

Query: 186 KKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANL 240
           KKLSFETA GLNGR WV+A +P  +I+V+NA++NSETLSG QQRIMV+KLL  +
Sbjct: 186 KKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239

[Close]

BLAST of IVF0015227 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 352.8 bits (904), Expect = 2.2e-97
Identity = 176/237 (74.26%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD DAIS  + GKL +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYW+ESS KRY+P  +D VLGIV+DSRADNF VDIKGP LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGFMFECSTGLSRMLLSSPPCPV 180
           E+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DGFMFE STGLSRMLL+SP  PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180

Query: 181 LESLGKKLSFETAIGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLA 238
           +E+LGKKLSFE A+GLNGRVWVNA +P  +I+V+NAI+NSE+LSG QQRIMV+KLLA
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLLA 237

[Close]

BLAST of IVF0015227 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 320.9 bits (821), Expect = 9.1e-88
Identity = 155/211 (73.46%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 29  MTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSR 88
           MTN+TIKLG GLRQD + ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIV+D +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 89  ADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASG 148
            +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SG
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120

Query: 149 KAAGFGLLKDGFMFECSTGLSRMLLSSPPCPVLESLGKKLSFETAIGLNGRVWVNADSPS 208
           KAAGFG LKDGFMFE STGLSRMLLSSP CPVLE+LGKKLSFETA GLNGR WV+A +P 
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180

Query: 209 TIIVVSNAILNSETLSGVQQRIMVDKLLANL 240
            +I+V+NA++NSETLSG QQRIMV+KLL  +
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKLLEKI 211

The following BLAST results are available for this feature:

BLAST of IVF0015227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	1.1e-45	43.42	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8IPX7	2.0e-39	38.03	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q3T0E1	9.3e-37	34.51	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q7TQK4	1.2e-36	39.51	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]
Q9NQT5	6.0e-36	38.35	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]

BLAST of IVF0015227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFK9	8.0e-132	100.00	Ribosomal RNA-processing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CNB3	8.0e-132	100.00	Ribosomal RNA-processing protein 40 OS=Cucumis melo OX=3656 GN=LOC103502403 PE=3...	[more]
A0A0A0LP58	7.4e-130	98.35	Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 P...	[more]
A0A6J1E1A1	9.4e-125	94.24	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]
A0A6J1ECW1	1.0e-123	93.42	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11143317...	[more]

BLAST of IVF0015227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464560.1	5.59e-170	100.00	PREDICTED: putative exosome complex component rrp40 [Cucumis melo] >KAA0057849.1...	[more]
XP_004138110.1	2.18e-167	98.35	putative exosome complex component rrp40 isoform X1 [Cucumis sativus]	[more]
XP_038878675.1	3.88e-161	94.65	putative exosome complex component rrp40 [Benincasa hispida]	[more]
KAG7023129.1	5.52e-161	94.65	putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp....	[more]
XP_022921727.1	1.11e-160	94.24	putative exosome complex component rrp40 [Cucurbita moschata]	[more]

BLAST of IVF0015227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25355.1	2.2e-97	73.50	PNAS-3 related	[more]
AT4G32175.1	2.2e-97	74.26	PNAS-3 related	[more]
AT2G25355.2	9.1e-88	73.46	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.100		coord: 8..73 e-value: 1.8E-14 score: 55.6
None	No IPR available	GENE3D	2.40.50.140		coord: 78..154 e-value: 1.2E-24 score: 87.8
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 11..237
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 9..70
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 159..207 e-value: 1.3E-16 score: 60.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 155..238 e-value: 9.5E-27 score: 94.5
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 158..239
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..237
IPR037319	Rrp40, S1 domain	CDD	cd05790	S1_Rrp40	coord: 71..156 e-value: 2.9027E-38 score: 126.605
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 70..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015227.1	IVF0015227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071034	CUT catabolic process
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding