IVF0015124 (gene) Melon (IVF77) v1

Overview


Name	IVF0015124
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr08: 17268324 .. 17268548 (-)
RNA-Seq Expression	IVF0015124
Synteny	IVF0015124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACAGCTTTTAAGGAAGTGCTTTTGGAGAATGTGGCGATAAAGGAACAAATCGCCAACCTTAACACTCAAGTGCAAGGCTTAGAAGCCATAGTCTCCAACCTTAACTCTGTGGTCTCGCAACTCTCCTTTTCCCTGACTAATTTAACAAGTATGATGATTGCTCACTCCAACTCGTCAAGTCACATTGCGAAGCGACATGGTAGGCAGTTTGCGACATAA

mRNA sequence

ATGAACACAGCTTTTAAGGAAGTGCTTTTGGAGAATGTGGCGATAAAGGAACAAATCGCCAACCTTAACACTCAAGTGCAAGGCTTAGAAGCCATAGTCTCCAACCTTAACTCTGTGGTCTCGCAACTCTCCTTTTCCCTGACTAATTTAACAAGTATGATGATTGCTCACTCCAACTCGTCAAGTCACATTGCGAAGCGACATGGTAGGCAGTTTGCGACATAA

Coding sequence (CDS)

ATGAACACAGCTTTTAAGGAAGTGCTTTTGGAGAATGTGGCGATAAAGGAACAAATCGCCAACCTTAACACTCAAGTGCAAGGCTTAGAAGCCATAGTCTCCAACCTTAACTCTGTGGTCTCGCAACTCTCCTTTTCCCTGACTAATTTAACAAGTATGATGATTGCTCACTCCAACTCGTCAAGTCACATTGCGAAGCGACATGGTAGGCAGTTTGCGACATAA

Protein sequence

MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNSSSHIAKRHGRQFAT

Homology

[Close]

BLAST of IVF0015124 vs. ExPASy TrEMBL
Match: A0A5D3BNP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold61472G00010 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
          M   FKEVLLENV +KEQIANLN++VQG+EA VS LNS+VSQ SF+L NLTS MIAHSN 
Sbjct: 1  MYATFKEVLLENVVMKEQIANLNSKVQGVEATVSQLNSMVSQFSFALNNLTSFMIAHSNQ 60

Query: 61 SSHIAKRHGRQF 73
          S HI + H RQF
Sbjct: 61 SHHIMEHHDRQF 72

[Close]

BLAST of IVF0015124 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1    MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
            MN  FKE+LLENVA KEQIA+LNTQVQGLEA VSNLNS VSQLS +LTNLT +MI++   
Sbjct: 1463 MNVTFKEMLLENVATKEQIASLNTQVQGLEATVSNLNSTVSQLSSTLTNLTILMISYLKQ 1522

Query: 61   SSHIAKRHGRQFA 74
              HI KRH R+FA
Sbjct: 1523 LHHITKRHHRKFA 1535

[Close]

BLAST of IVF0015124 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
           MN  FKE+LLENVA KEQIA+LNTQVQGLEA VSNLNS VSQLS +LTNLT +MI++   
Sbjct: 302 MNVTFKEMLLENVATKEQIASLNTQVQGLEATVSNLNSTVSQLSSTLTNLTILMISYLKQ 361

Query: 61  SSHIAKRHGRQFA 74
             HI KRH R+FA
Sbjct: 362 LHHITKRHHRKFA 374

[Close]

BLAST of IVF0015124 vs. ExPASy TrEMBL
Match: A0A5A7SSN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00270 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
          M   FKEVLLENV +KEQIANLN++VQG+EA VS LNS+VSQ SF+L NLTS MIAHSN 
Sbjct: 1  MYATFKEVLLENVVMKEQIANLNSKVQGVEATVSQLNSMVSQFSFALNNLTSFMIAHSNQ 60

Query: 61 SSHIAKRHGRQF 73
          S HI + H +QF
Sbjct: 61 SRHIMEHHDKQF 72

[Close]

BLAST of IVF0015124 vs. ExPASy TrEMBL
Match: A0A5D3BD35 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
           MN  FKE+LLENV +K+QIA+LNTQV GLEA VS LNS V QLS +LTNLTS+M+AHSN 
Sbjct: 351 MNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQ 410

Query: 61  SSHIAKRHGR 71
           S HI  RH +
Sbjct: 411 SRHIVDRHDK 420

[Close]

BLAST of IVF0015124 vs. NCBI nr
Match: TYK00745.1 (hypothetical protein E5676_scaffold61472G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 9.30e-24
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
          M   FKEVLLENV +KEQIANLN++VQG+EA VS LNS+VSQ SF+L NLTS MIAHSN 
Sbjct: 1  MYATFKEVLLENVVMKEQIANLNSKVQGVEATVSQLNSMVSQFSFALNNLTSFMIAHSNQ 60

Query: 61 SSHIAKRHGRQF 72
          S HI + H RQF
Sbjct: 61 SHHIMEHHDRQF 72

[Close]

BLAST of IVF0015124 vs. NCBI nr
Match: KAA0032215.1 (hypothetical protein E6C27_scaffold219G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 2.66e-23
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
          M   FKEVLLENV +KEQIANLN++VQG+EA VS LNS+VSQ SF+L NLTS MIAHSN 
Sbjct: 1  MYATFKEVLLENVVMKEQIANLNSKVQGVEATVSQLNSMVSQFSFALNNLTSFMIAHSNQ 60

Query: 61 SSHIAKRHGRQF 72
          S HI + H +QF
Sbjct: 61 SRHIMEHHDKQF 72

[Close]

BLAST of IVF0015124 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.31e-20
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1   MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
           MN  FKE+LLENVA KEQIA+LNTQVQGLEA VSNLNS VSQLS +LTNLT +MI++   
Sbjct: 302 MNVTFKEMLLENVATKEQIASLNTQVQGLEATVSNLNSTVSQLSSTLTNLTILMISYLKQ 361

Query: 61  SSHIAKRHGRQFA 73
             HI KRH R+FA
Sbjct: 362 LHHITKRHHRKFA 374

[Close]

BLAST of IVF0015124 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 2.23e-20
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1    MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
            MN  FKE+LLENVA KEQIA+LNTQVQGLEA VSNLNS VSQLS +LTNLT +MI++   
Sbjct: 1463 MNVTFKEMLLENVATKEQIASLNTQVQGLEATVSNLNSTVSQLSSTLTNLTILMISYLKQ 1522

Query: 61   SSHIAKRHGRQFA 73
              HI KRH R+FA
Sbjct: 1523 LHHITKRHHRKFA 1535

[Close]

BLAST of IVF0015124 vs. NCBI nr
Match: KAA0040567.1 (hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK05610.1 hypothetical protein E5676_scaffold98G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 5.48e-20
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   MNTAFKEVLLENVAIKEQIANLNTQVQGLEAIVSNLNSVVSQLSFSLTNLTSMMIAHSNS 60
           MN AF EV L+NVA K+QI NLN QVQ LEA+VSNLNS V QLSF+L NLTS+MIAHSN 
Sbjct: 140 MNAAFNEVFLKNVAKKDQITNLNIQVQSLEAMVSNLNSTVVQLSFALINLTSLMIAHSNQ 199

Query: 61  SSHIAK 66
           S HIAK
Sbjct: 200 SCHIAK 205

The following BLAST results are available for this feature:

BLAST of IVF0015124 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNP3	1.3e-16	70.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U806	2.9e-16	71.23	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	2.9e-16	71.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SSN6	2.9e-16	69.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BD35	7.0e-15	68.57	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1	[more]

BLAST of IVF0015124 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00745.1	9.30e-24	70.83	hypothetical protein E5676_scaffold61472G00010 [Cucumis melo var. makuwa]	[more]
KAA0032215.1	2.66e-23	69.44	hypothetical protein E6C27_scaffold219G00270 [Cucumis melo var. makuwa]	[more]
TYK15967.1	1.31e-20	71.23	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0049609.1	2.23e-20	71.23	transposase [Cucumis melo var. makuwa]	[more]
KAA0040567.1	5.48e-20	74.24	hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK056...	[more]

BLAST of IVF0015124 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015124.1	IVF0015124.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding