IVF0015044 (gene) Melon (IVF77) v1

Overview
NameIVF0015044
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionactivating signal cointegrator 1 complex subunit 1
Locationchr05: 5286905 .. 5287556 (-)
RNA-Seq ExpressionIVF0015044
SyntenyIVF0015044
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGTAAAACGGAATTTAAGAGTGCTGCTGACCAGAATAAAAAGCGCAAAACAATCAGCCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTCTGAGGGTGGTTGAATTTATATTGCAAAAGGATATAAGTATTAGCTGTATACTTTGGGACATCCAACAAGCTCCTAAAGTTACCAAGTATAAGTTCTTTTAATGTTAGCAAAAGGCATGGGAATTTGTTGTTCATCTTAAGCATAATAGTGAATAGCCCCCAACTGGATTAAAAATTTTATGATGATAGGTGTTACACGCTAAACAGTTGAATTAATCATGTACCTAGGGGATTTATTTAGTGGGAGATAATTGTTCTTAATGTAGATTTTTCAGTTAAGGATGATAAGTTGAGTCAGAGGATGGAAGTCAAGTTCAAGAAATGGACTGCAGAATGCATTCCAGTACAGCTAGTCCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTGACTGAGCTAAGTGTAAATGTTGGTGGAGACACGAACTTGGAGGGTCAATTTGTGCCTTCTGGTGAGAAGTTTTCAGTGAAACTATATGTAAGTCAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATCGAGACTTCCTGTCAATTGATTGA

mRNA sequence

ATGACTGGTAAAACGGAATTTAAGAGTGCTGCTGACCAGAATAAAAAGCGCAAAACAATCAGCCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTCTGAGGTTGAGTCAGAGGATGGAAGTCAAGTTCAAGAAATGGACTGCAGAATGCATTCCAGTACAGCTAGTCCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTGACTGAGCTAAGTGTAAATGTTGGTGGAGACACGAACTTGGAGGGTCAATTTGTGCCTTCTGGTGAGAAGTTTTCAGTGAAACTATATGTAAGTCAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATCGAGACTTCCTGTCAATTGATTGA

Coding sequence (CDS)

ATGACTGGTAAAACGGAATTTAAGAGTGCTGCTGACCAGAATAAAAAGCGCAAAACAATCAGCCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTCTGAGGTTGAGTCAGAGGATGGAAGTCAAGTTCAAGAAATGGACTGCAGAATGCATTCCAGTACAGCTAGTCCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTGACTGAGCTAAGTGTAAATGTTGGTGGAGACACGAACTTGGAGGGTCAATTTGTGCCTTCTGGTGAGAAGTTTTCAGTGAAACTATATGTAAGTCAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATCGAGACTTCCTGTCAATTGATTGA

Protein sequence

MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSEVESEDGSQVQEMDCRMHSSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHIRLNELLSNIVNRDFLSID
Homology
[Close]
BLAST of IVF0015044 vs. ExPASy TrEMBL
Match: A0A5D3C0W5 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002070 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.8e-42
Identity = 96/112 (85.71%), Postives = 97/112 (86.61%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGKTEFKSAADQ KKRKTISQAWRPVCTHACSSE        VESEDGSQVQEMDCRMH
Sbjct: 75  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 134

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 105
           SSTAS QPVEVVEEINVVTELSVNVGGDTNLEGQ VPSGEKFSVKL V   +
Sbjct: 135 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 186

[Close]
BLAST of IVF0015044 vs. ExPASy TrEMBL
Match: A0A1S3CGC2 (activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103500600 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.8e-42
Identity = 96/112 (85.71%), Postives = 97/112 (86.61%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGKTEFKSAADQ KKRKTISQAWRPVCTHACSSE        VESEDGSQVQEMDCRMH
Sbjct: 51  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 110

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 105
           SSTAS QPVEVVEEINVVTELSVNVGGDTNLEGQ VPSGEKFSVKL V   +
Sbjct: 111 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 162

[Close]
BLAST of IVF0015044 vs. ExPASy TrEMBL
Match: A0A5D3DFJ4 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00870 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGK EFKSAADQNKKRKTI QAWRPVCTHACSSE        VES+DGSQVQEMDC MH
Sbjct: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVESKDGSQVQEMDCIMH 60

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 105
           SS AS QPVEVVEEINVVTELSVNV GDTNLEGQ VPSGEKFSVKL VS+HI
Sbjct: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 112

[Close]
BLAST of IVF0015044 vs. ExPASy TrEMBL
Match: A0A0A0K963 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.4e-36
Identity = 88/112 (78.57%), Postives = 92/112 (82.14%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGKTEF+SAADQ KKRKTISQAWRPVCTHAC SE        VESEDGSQVQEMD RMH
Sbjct: 97  MTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEDLSVEDDRVESEDGSQVQEMDVRMH 156

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 105
           +ST S QPVEV EEINVVTELSVN+GGDTNLEGQ V SGEKFSVKL V   +
Sbjct: 157 TST-SAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 207

[Close]
BLAST of IVF0015044 vs. ExPASy TrEMBL
Match: A0A6J1GQ24 (uncharacterized protein LOC111456441 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456441 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-24
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           M GK EF+  ADQ KKRKTI+QAWRPVCT A  SE        VESEDGS+VQE    +H
Sbjct: 39  MAGKKEFRRVADQKKKRKTITQAWRPVCTQASPSEDLVVKNDRVESEDGSRVQE----IH 98

Query: 61  SSTASPQ-PVEVVEEINVVTELSV------NVGGDTNLEGQFVPSGEKFSVKLYVSQHI 105
           +ST S Q  VEV EEINVVT+LSV      N GGDTNLEGQ VPSGEKFSVKL V   +
Sbjct: 99  TSTVSAQNVVEVAEEINVVTDLSVGSSAFPNEGGDTNLEGQSVPSGEKFSVKLDVGSSL 153

[Close]
BLAST of IVF0015044 vs. NCBI nr
Match: KAA0033771.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK22364.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (448), Expect = 7.30e-55
Identity = 94/112 (83.93%), Postives = 96/112 (85.71%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGK EFKSAADQNKKRKTI QAWRPVCTHACSSE        VES+DGSQVQEMDC MH
Sbjct: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVESKDGSQVQEMDCIMH 60

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 104
           SS AS QPVEVVEEINVVTELSVNV GDTNLEGQ VPSGEKFSVKL VS+HI
Sbjct: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 112

[Close]
BLAST of IVF0015044 vs. NCBI nr
Match: XP_008462176.1 (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo])

HSP 1 Score: 182 bits (461), Expect = 3.32e-52
Identity = 96/112 (85.71%), Postives = 97/112 (86.61%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGKTEFKSAADQ KKRKTISQAWRPVCTHACSSE        VESEDGSQVQEMDCRMH
Sbjct: 51  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 110

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 104
           SSTAS QPVEVVEEINVVTELSVNVGGDTNLEGQ VPSGEKFSVKL V   +
Sbjct: 111 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 162

[Close]
BLAST of IVF0015044 vs. NCBI nr
Match: KAA0059318.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK04009.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 6.39e-52
Identity = 96/112 (85.71%), Postives = 97/112 (86.61%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGKTEFKSAADQ KKRKTISQAWRPVCTHACSSE        VESEDGSQVQEMDCRMH
Sbjct: 75  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 134

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 104
           SSTAS QPVEVVEEINVVTELSVNVGGDTNLEGQ VPSGEKFSVKL V   +
Sbjct: 135 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 186

[Close]
BLAST of IVF0015044 vs. NCBI nr
Match: XP_004141755.1 (activating signal cointegrator 1 complex subunit 1 isoform X2 [Cucumis sativus] >KAE8646472.1 hypothetical protein Csa_016081 [Cucumis sativus])

HSP 1 Score: 161 bits (408), Expect = 1.54e-44
Identity = 88/112 (78.57%), Postives = 92/112 (82.14%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE--------VESEDGSQVQEMDCRMH 60
           MTGKTEF+SAADQ KKRKTISQAWRPVCTHAC SE        VESEDGSQVQEMD RMH
Sbjct: 39  MTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEDLSVEDDRVESEDGSQVQEMDVRMH 98

Query: 61  SSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 104
           +ST S QPVEV EEINVVTELSVN+GGDTNLEGQ V SGEKFSVKL V   +
Sbjct: 99  TST-SAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 149

[Close]
BLAST of IVF0015044 vs. NCBI nr
Match: XP_031745175.1 (activating signal cointegrator 1 complex subunit 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 160 bits (405), Expect = 2.34e-44
Identity = 88/115 (76.52%), Postives = 92/115 (80.00%), Query Frame = 0 

Query: 1   MTGKTEFKSAADQNKKRKTISQAWRPVCTHACSSE-----------VESEDGSQVQEMDC 60
           MTGKTEF+SAADQ KKRKTISQAWRPVCTHAC SE           VESEDGSQVQEMD 
Sbjct: 1   MTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEGRLDLSVEDDRVESEDGSQVQEMDV 60

Query: 61  RMHSSTASPQPVEVVEEINVVTELSVNVGGDTNLEGQFVPSGEKFSVKLYVSQHI 104
           RMH+ST S QPVEV EEINVVTELSVN+GGDTNLEGQ V SGEKFSVKL V   +
Sbjct: 61  RMHTST-SAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 114

The following BLAST results are available for this feature:
BLAST of IVF0015044 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0015044 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C0W53.8e-4285.71Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O... [more]
A0A1S3CGC23.8e-4285.71activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5D3DFJ41.2e-4083.93Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O... [more]
A0A0A0K9635.4e-3678.57KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=... [more]
A0A6J1GQ244.7e-2463.03uncharacterized protein LOC111456441 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of IVF0015044 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033771.17.30e-5583.93activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T... [more]
XP_008462176.13.32e-5285.71PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo][more]
KAA0059318.16.39e-5285.71activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T... [more]
XP_004141755.11.54e-4478.57activating signal cointegrator 1 complex subunit 1 isoform X2 [Cucumis sativus] ... [more]
XP_031745175.12.34e-4476.52activating signal cointegrator 1 complex subunit 1 isoform X3 [Cucumis sativus][more]
BLAST of IVF0015044 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015044.1IVF0015044.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding