IVF0015025 (gene) Melon (IVF77) v1

Overview


Name	IVF0015025
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 31094071 .. 31095577 (-)
RNA-Seq Expression	IVF0015025
Synteny	IVF0015025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACATGGCGGCATAACCTTCCGACACGTCGACATTTTTCCTTCAGCCAAATTGGCATTTCAGTCCATCCACTTGCCGCTCATCTTTCTCAATCCTTCACCAATTTAAATGTTCAAATTCATTACTTTCTTCTCTTTTTTTTTTTTTTTTTTTCCTTCTATCCATCGATCCCTTCTCCGTCTCGATTAACCGGAGTGGAATTTTCTTTTCTTCGATTTGGCTAGGATTTGTTCCTGTTCCACTACCTCCACACACGTTCCTTATTTATTGTTCTTTCCAATCTCACGATCTGCGGATTTTCGGATTGTACTGGATTTTTTGAATCTGAGACTGAGAGGTGTCCTTCATTTGCTTTTGGTGGAATTCGAGGTACTCTCGGGGAATTCGATCGTGTTTTTGTTGACTGTTCATTTATTTAGAAAGTGCTTTTAGAGAAGCTTCGACCTGCTTCGACAAAATAGGTAGGAGCTCACGGGAATCACTTGTCTAAGCTTTCTGAACAGTTGTTTTGAAAGGGCGACGTATTCGAGAAGTCTGTCGTTTCGTTTAGTTTTTTCGTGAGGAAATTTCGGTGAAGGATAAGAGTACAGAAAGGAATTTGTTTGTTTGTTTGTTCCTGTGCTTCTGTTGAATGTACTGAGGTGGTATAACGTCAATCGAGTATTTTCGTTATTAGGTTTGTGCCACGGTTTTCTCAGCTGGAAATTTGGGTGTTTTTCTTTTGTTTTGCTGTAAAATCCTAATGAACTGAGAAAGTAGCGACCCCATTAGTCTGATTTTGGTTGTTTTTGATAATTTGATTTGAAAATCCAAGGATTTGATGTTTTGGTGTTAATTGGTATGGTGGTACTTTCAACTTTTCCTTTTGGGAAGAGATAGAATTGAGTAATTGGAAAGAATTTTTGTTTATATGTATTTATTGTTGTTTCTACTGTCGTCTGTTGCAGTTTGGCTGCAATATCAAGTCTCGGTGGTTATTGCCTTAGCTTGAATTCTTTGAAATTAAAGCAGGTTTTCAAGAAGCTACTTTTTGACTTTTTTCCCCCACTTTTTTTATTCTTTTGCAGGGTTTTCTTCTTTATAAAATCATCTCTTTCCGTAATAATTTTTCTGGATGCAACTGAGGCGCGTGAAAATAAGTTGCTCGGCAAAGTTATCGCCATGCAGGTACTTTCCGATGTTCACCTTTAAATTGAATTTCATTTTTGTTTTTGTGAACTCTTCATCCCTCCCTTTGTTCTGCTTCTCTTTATCTCCTTTTCTGTCCTTGTGTTTTTTACTTATTTCCTGTAAATTTAAAATGAATATCTTTGGTTTGTTTTGGAACATTGGATTCTGTCTGTAGCAACACTTGATTCCTCGATAAATCCTCTCAAATTACACTTTTCAAACTTGGGTTTTTTTATTCCTTTAAAAAAAAAAAAAACTCTGATCCTTCACTCCTGTCTGGTTTACCGGATTTTCCAGGAAAGAGCCGGGTTTTCAAATCTCACCAGCTGCTGA

mRNA sequence

ATGTCGACATGGCGGCATAACCTTCCGACACGTCGACATTTTTCCTTCAGCCAAATTGGCATTTCAGTCCATCCACTTGCCGCTCATCTTTCTCAATCCTTCACCAATTTAAATTGGAATTTTCTTTTCTTCGATTTGGCTAGGATTTGTTCCTGTTCCACTACCTCCACACACGTTCCTTATTTATTGTTCTTTCCAATCTCACGATCTGCGGATTTTCGGATTGTACTGGATTTTTTGAATCTGAGACTGAGAGGTGTCCTTCATTTGCTTTTGGTGGAATTCGAGTACAGAAAGGAATTTGTTTGTTTGTTTGTTCCTGTGCTTCTGTTGAATGTACTGAGGTGGTATAACGTCAATCGATTTGGCTGCAATATCAAGTCTCGGGTTTTCTTCTTTATAAAATCATCTCTTTCCGTAATAATTTTTCTGGATGCAACTGAGGCGCGTGAAAATAAGTTGCTCGGCAAAGTTATCGCCATGCAGGAAAGAGCCGGGTTTTCAAATCTCACCAGCTGCTGA

Coding sequence (CDS)

ATGTCGACATGGCGGCATAACCTTCCGACACGTCGACATTTTTCCTTCAGCCAAATTGGCATTTCAGTCCATCCACTTGCCGCTCATCTTTCTCAATCCTTCACCAATTTAAATTGGAATTTTCTTTTCTTCGATTTGGCTAGGATTTGTTCCTGTTCCACTACCTCCACACACGTTCCTTATTTATTGTTCTTTCCAATCTCACGATCTGCGGATTTTCGGATTGTACTGGATTTTTTGAATCTGAGACTGAGAGGTGTCCTTCATTTGCTTTTGGTGGAATTCGAGTACAGAAAGGAATTTGTTTGTTTGTTTGTTCCTGTGCTTCTGTTGAATGTACTGAGGTGGTATAACGTCAATCGATTTGGCTGCAATATCAAGTCTCGGGTTTTCTTCTTTATAAAATCATCTCTTTCCGTAATAATTTTTCTGGATGCAACTGAGGCGCGTGAAAATAAGTTGCTCGGCAAAGTTATCGCCATGCAGGAAAGAGCCGGGTTTTCAAATCTCACCAGCTGCTGA

Protein sequence

MSTWRHNLPTRRHFSFSQIGISVHPLAAHLSQSFTNLNWNFLFFDLARICSCSTTSTHVPYLLFFPISRSADFRIVLDFLNLRLRGVLHLLLVEFEYRKEFVCLFVPVLLLNVLRWYNVNRFGCNIKSRVFFFIKSSLSVIIFLDATEARENKLLGKVIAMQERAGFSNLTSC

Homology

[Close]

BLAST of IVF0015025 vs. ExPASy TrEMBL
Match: A0A0A0LD94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734990 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 140/197 (71.07%), Postives = 147/197 (74.62%), Query Frame = 0


Query: 1   MSTWRHNLPTRRHFSFSQIGISVHPLAAHLSQSFTNLNWNFLFFDLARICSCSTTSTHVP 60
           MSTWRH LPTRRHF  SQIGISVHPLAAHLSQSFTNLN  FLF+           +TH+P
Sbjct: 1   MSTWRHKLPTRRHFLLSQIGISVHPLAAHLSQSFTNLNDLFLFY----------YATHIP 60

Query: 61  YLLFFPISRSADFRIVLDFLNLRLRGVLHLLLVEFE-------------YRKE------- 120
           YLLFFPISRSADFR V DFLNLRLRGVLHLL+VEFE             +R+E       
Sbjct: 61  YLLFFPISRSADFRTVPDFLNLRLRGVLHLLVVEFEGDVFEKSVVSFSFFREEISVKEKS 120

Query: 121 -----FVCLFVPVLLLNVLRWYNVNRFGCNIKSRVFFFIKSSLSVIIFLDATEARENKLL 173
                FVCLFVPVLLLNVLRW NVN F CNIKSRVFFFIKSSLSVIIFLD TEARE+KLL
Sbjct: 121 TEMNLFVCLFVPVLLLNVLRWDNVNPFVCNIKSRVFFFIKSSLSVIIFLDVTEARESKLL 180

[Close]

BLAST of IVF0015025 vs. NCBI nr
Match: KGN58899.1 (hypothetical protein Csa_000789 [Cucumis sativus])

HSP 1 Score: 241 bits (615), Expect = 2.45e-78
Identity = 140/197 (71.07%), Postives = 147/197 (74.62%), Query Frame = 0


Query: 1   MSTWRHNLPTRRHFSFSQIGISVHPLAAHLSQSFTNLNWNFLFFDLARICSCSTTSTHVP 60
           MSTWRH LPTRRHF  SQIGISVHPLAAHLSQSFTNLN  FLF+           +TH+P
Sbjct: 1   MSTWRHKLPTRRHFLLSQIGISVHPLAAHLSQSFTNLNDLFLFYY----------ATHIP 60

Query: 61  YLLFFPISRSADFRIVLDFLNLRLRGVLHLLLVEFE-------------YRKE------- 120
           YLLFFPISRSADFR V DFLNLRLRGVLHLL+VEFE             +R+E       
Sbjct: 61  YLLFFPISRSADFRTVPDFLNLRLRGVLHLLVVEFEGDVFEKSVVSFSFFREEISVKEKS 120

Query: 121 -----FVCLFVPVLLLNVLRWYNVNRFGCNIKSRVFFFIKSSLSVIIFLDATEARENKLL 172
                FVCLFVPVLLLNVLRW NVN F CNIKSRVFFFIKSSLSVIIFLD TEARE+KLL
Sbjct: 121 TEMNLFVCLFVPVLLLNVLRWDNVNPFVCNIKSRVFFFIKSSLSVIIFLDVTEARESKLL 180

[Close]

BLAST of IVF0015025 vs. NCBI nr
Match: KAG7017321.1 (hypothetical protein SDJN02_19184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 1.45e-06
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 132 FFIKSSLSVIIFLDATEARENKLLGKVIAMQERAGFSNLTSC 173
           FFIKSSLSVIIFLD TEARENKLLG+VI +Q      N T C
Sbjct: 28  FFIKSSLSVIIFLDITEARENKLLGRVIGIQNNR--ENRTDC 67

The following BLAST results are available for this feature:

BLAST of IVF0015025 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD94	1.8e-61	71.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734990 PE=4 SV=1	[more]

BLAST of IVF0015025 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58899.1	2.45e-78	71.07	hypothetical protein Csa_000789 [Cucumis sativus]	[more]
KAG7017321.1	1.45e-06	71.43	hypothetical protein SDJN02_19184, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of IVF0015025 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015025.1	IVF0015025.1	mRNA