IVF0014998 (gene) Melon (IVF77) v1

Overview


Name	IVF0014998
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	auxin-regulated gene involved in organ size
Location	chr08: 10098030 .. 10098518 (+)
RNA-Seq Expression	IVF0014998
Synteny	IVF0014998

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCCTCTCTTTCTCTCCCTTGACCGTAACATCAAAACACTACGTCCCTTCATTCTCCGGTCATTGCCGGCCGACAAAAATCAATTCTTTTCTTGTGGGTGTTTTGTTAGAGATAAAAACTCCACGACTTTACTCCGATATGCACGGGAAGAAAACCCTATTGGGTTGTGTCCAAATTTTGCTTTTGGCGGCGACGGGCGGGGGCGGTGGAGTTTGATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTCTGGCGGTGTCTCTTTTGATATTGCCACTTGTGCTGCCGCCGTTGCCGCCTCCACCGGTATTGCTGCTGTTTGTTCCGGTCTTGATTATGTCGTTGCTTTTGTTCTTAGCTTTGTCGCCATCGGAGGCCCCAGCGGAGGGGCACCGTGGGACTGACTGCGACGGCGGGTTCAACTCGGCTTGATTTTTTTTTTTTTGTTGATTAGAAAATATATATAGTGGGAG

mRNA sequence

CCGCCCTCTCTTTCTCTCCCTTGACCGTAACATCAAAACACTACGTCCCTTCATTCTCCGGTCATTGCCGGCCGACAAAAATCAATTCTTTTCTTGTGGGTGTTTTGTTAGAGATAAAAACTCCACGACTTTACTCCGATATGCACGGGAAGAAAACCCTATTGGGTTGTGTCCAAATTTTGCTTTTGGCGGCGACGGGCGGGGGCGGTGGAGTTTGATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTCTGGCGGTGTCTCTTTTGATATTGCCACTTGTGCTGCCGCCGTTGCCGCCTCCACCGGTATTGCTGCTGTTTGTTCCGGTCTTGATTATGTCGTTGCTTTTGTTCTTAGCTTTGTCGCCATCGGAGGCCCCAGCGGAGGGGCACCGTGGGACTGACTGCGACGGCGGGTTCAACTCGGCTTGATTTTTTTTTTTTTGTTGATTAGAAAATATATATAGTGGGAG

Coding sequence (CDS)

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTCTGGCGGTGTCTCTTTTGATATTGCCACTTGTGCTGCCGCCGTTGCCGCCTCCACCGGTATTGCTGCTGTTTGTTCCGGTCTTGATTATGTCGTTGCTTTTGTTCTTAGCTTTGTCGCCATCGGAGGCCCCAGCGGAGGGGCACCGTGGGACTGACTGCGACGGCGGGTTCAACTCGGCTTGA

Protein sequence

MVRGFFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGGFNSA

Homology

[Close]

BLAST of IVF0014998 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEA 60
           +FSL S+ +L+ L  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS +
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPSSS 125

[Close]

BLAST of IVF0014998 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-07
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 9  RSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPA 62
          RSVA+L+ L++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of IVF0014998 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 5   FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGH 64
           +FS+ S+ +L+ +  SL+ILPLVLPPLPPPP +L+ VPV ++ LLL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSS 158

Query: 65  RGTDCDGGFNSA 77
            G    GG N A
Sbjct: 159 AGGGGGGGRNGA 170

[Close]

BLAST of IVF0014998 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-07
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ L  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of IVF0014998 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-07
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ L  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of IVF0014998 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 13 MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 72
          MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 60

Query: 73 FNSA 77
          FNSA
Sbjct: 61 FNSA 64

[Close]

BLAST of IVF0014998 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-21
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 13 MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 72
          MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTD DGG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDSDGG 60

Query: 73 FNSA 77
          +NSA
Sbjct: 61 YNSA 64

[Close]

BLAST of IVF0014998 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 66/76 (86.84%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MVRGFFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAP 60
          MVRGFFSLRSVAMLIV+AVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSE P
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEGHRGTDCDGGFNSA 77
          AE H  TD     NSA
Sbjct: 61 AEEHHETDGGDEDNSA 76

[Close]

BLAST of IVF0014998 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 38/60 (63.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   MVRGFFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAP 60
           M+  FFSLR+V +++VL VSLL+LP+VLPPLPPPP++LLF+P+LIM++L+ LA SPS+ P
Sbjct: 89  MLVRFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLP 148

[Close]

BLAST of IVF0014998 vs. ExPASy TrEMBL
Match: A0A2K1XAA4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G037200 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 5  FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEA 60
          FFSLRSV  ++VL VSLL+LPLVLPPL PPP+L LFVPV IMSLLLFLALS S A
Sbjct: 4  FFSLRSVVTMVVLTVSLLVLPLVLPPLSPPPLLFLFVPVFIMSLLLFLALSSSTA 58

[Close]

BLAST of IVF0014998 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 2.79e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 13 MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 72
          MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 60

Query: 73 FNSA 76
          FNSA
Sbjct: 61 FNSA 64

[Close]

BLAST of IVF0014998 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 2.69e-29
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 13 MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDCDGG 72
          MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTD DGG
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGHRGTDSDGG 60

Query: 73 FNSA 76
          +NSA
Sbjct: 61 YNSA 64

[Close]

BLAST of IVF0014998 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (256), Expect = 7.43e-27
Identity = 64/77 (83.12%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MVRGFFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAP 60
          MVR FFSLRSVAMLIV+A SLLILPLVLPPLPPPPVLLLFVPVLIM  LLFLALSPSE P
Sbjct: 1  MVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVP 60

Query: 61 AEGHR-GTDCDGGFNSA 76
          AE HR G D  GG +SA
Sbjct: 61 AEEHRVGADGGGGHDSA 77

[Close]

BLAST of IVF0014998 vs. NCBI nr
Match: KAG2683596.1 (hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothetical protein I3842_10G039100 [Carya illinoinensis] >KAG7958838.1 hypothetical protein I3843_10G039300 [Carya illinoinensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.74e-14
Identity = 41/57 (71.93%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 4  GFFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAP 60
          G+FS RS+ ++IVLAVSL+++PL+LPPLPPPP+LLLFVPVLIMSLL+ LALS S  P
Sbjct: 3  GYFSARSIVVMIVLAVSLVVVPLLLPPLPPPPLLLLFVPVLIMSLLVVLALSSSHVP 59

[Close]

BLAST of IVF0014998 vs. NCBI nr
Match: PNS97701.1 (hypothetical protein POPTR_016G037200 [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 1.03e-13
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 4  GFFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEA 59
           FFSLRSV  ++VL VSLL+LPLVLPPL PPP+L LFVPV IMSLLLFLALS S A
Sbjct: 3  SFFSLRSVVTMVVLTVSLLVLPLVLPPLSPPPLLFLFVPVFIMSLLLFLALSSSTA 58

[Close]

BLAST of IVF0014998 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 9  RSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPA 62
          RSVA+L+ L++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of IVF0014998 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-08
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ L  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of IVF0014998 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 53.9 bits (128), Expect = 6.5e-08
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 5   FFSLRSVAMLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ L  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

The following BLAST results are available for this feature:

BLAST of IVF0014998 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7SFP6	2.4e-07	61.82	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RWS1	2.4e-07	62.26	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]
Q7X6L2	3.1e-07	47.22	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
Q6NMD6	9.1e-07	64.15	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q8RXL7	9.1e-07	60.38	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]

BLAST of IVF0014998 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWW3	2.1e-22	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SII5	6.8e-21	96.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L0Y7	2.0e-20	86.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A5B7AL58	1.6e-09	63.33	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A2K1XAA4	4.5e-09	78.18	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G037200 PE=4 ...	[more]

BLAST of IVF0014998 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04223.1	2.79e-31	100.00	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAA0025988.1	2.69e-29	96.88	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
KAG6603314.1	7.43e-27	83.12	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2683596.1	1.74e-14	71.93	hypothetical protein I3760_10G039000 [Carya illinoinensis] >KAG6690947.1 hypothe...	[more]
PNS97701.1	1.03e-13	76.79	hypothetical protein POPTR_016G037200 [Populus trichocarpa]	[more]

BLAST of IVF0014998 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41230.1	1.7e-08	62.26	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT2G44080.1	6.5e-08	60.38	ARGOS-like	[more]
AT3G59900.1	6.5e-08	64.15	auxin-regulated gene involved in organ size	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 2..63
None	No IPR available	PANTHER	PTHR38928:SF8	ARGOS7	coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014998.2	IVF0014998.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus