IVF0014989 (gene) Melon (IVF77) v1

Overview


Name	IVF0014989
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 1088143 .. 1088385 (+)
RNA-Seq Expression	IVF0014989
Synteny	IVF0014989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAATTCTCTTTCATTTTCATCTTCATTTTGGCCTTCATTTCAGTTATTGTAGCTGCTGCCATTGGAGATATGAGCAAAGAAAAAGATGTTGCAACGAAGCTTCGTTATCATGATGAGTTCATATGGGGAAGAAAGGAGAGAATTAACCATGGAAGCTTTAGAGGTCCAAATAAATACCTTCTCAATAATCCTCACCCATTTCACCCATTTGATCAATTTCAAGACCCAATTCTCTAA

mRNA sequence

ATGGCTAAATTCTCTTTCATTTTCATCTTCATTTTGGCCTTCATTTCAGTTATTGTAGCTGCTGCCATTGGAGATATGAGCAAAGAAAAAGATGTTGCAACGAAGCTTCGTTATCATGATGAGTTCATATGGGGAAGAAAGGAGAGAATTAACCATGGAAGCTTTAGAGGTCCAAATAAATACCTTCTCAATAATCCTCACCCATTTCACCCATTTGATCAATTTCAAGACCCAATTCTCTAA

Coding sequence (CDS)

ATGGCTAAATTCTCTTTCATTTTCATCTTCATTTTGGCCTTCATTTCAGTTATTGTAGCTGCTGCCATTGGAGATATGAGCAAAGAAAAAGATGTTGCAACGAAGCTTCGTTATCATGATGAGTTCATATGGGGAAGAAAGGAGAGAATTAACCATGGAAGCTTTAGAGGTCCAAATAAATACCTTCTCAATAATCCTCACCCATTTCACCCATTTGATCAATTTCAAGACCCAATTCTCTAA

Protein sequence

MAKFSFIFIFILAFISVIVAAAIGDMSKEKDVATKLRYHDEFIWGRKERINHGSFRGPNKYLLNNPHPFHPFDQFQDPIL

Homology

[Close]

BLAST of IVF0014989 vs. ExPASy TrEMBL
Match: A0A0A0LH37 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-32
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MAKFSFIFIFILAFISVIVAAAIGDMSKEKDVATKLRYHDEFIWGRKERINHGSFRGPNK 60
          MAKFSFI IFILAFISV VAAAIGDMSK KDVATK  YHDEFIWGRKERINHGSFRGP+K
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 YLLNNPHPFHPFDQFQDPIL 81
          YLLN+PHPFHPFDQFQ PIL
Sbjct: 61 YLLNDPHPFHPFDQFQGPIL 80

[Close]

BLAST of IVF0014989 vs. NCBI nr
Match: KGN60344.1 (hypothetical protein Csa_002159 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 1.92e-44
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MAKFSFIFIFILAFISVIVAAAIGDMSKEKDVATKLRYHDEFIWGRKERINHGSFRGPNK 60
          MAKFSFI IFILAFISV VAAAIGDMSK KDVATK  YHDEFIWGRKERINHGSFRGP+K
Sbjct: 1  MAKFSFILIFILAFISVTVAAAIGDMSKGKDVATKFHYHDEFIWGRKERINHGSFRGPDK 60

Query: 61 YLLNNPHPFHPFDQFQDPIL 80
          YLLN+PHPFHPFDQFQ PIL
Sbjct: 61 YLLNDPHPFHPFDQFQGPIL 80

The following BLAST results are available for this feature:

BLAST of IVF0014989 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH37	3.1e-32	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895900 PE=4 SV=1	[more]

BLAST of IVF0014989 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60344.1	1.92e-44	90.00	hypothetical protein Csa_002159 [Cucumis sativus]	[more]

BLAST of IVF0014989 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014989.1	IVF0014989.1	mRNA