IVF0014964 (gene) Melon (IVF77) v1

Overview
NameIVF0014964
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 31958599 .. 31960447 (-)
RNA-Seq ExpressionIVF0014964
SyntenyIVF0014964
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCATCGCCAAGTAGTGTGTTGTTCATCCCTCGTCTTCTGTCTCCGAATCGCCGTGGAATTTCAGCTCAAACATACCCAGCGATGCTGCAAAGCCTAATTGGTATCATCTCTCAATTTTCCTCTTATCAAGATCTGAGCAAAATCTTAGCCAATTCAAACAATAAAATTATTTTGAACAAGCAAGTAAATCGAGCTTCGAATTCACCGACAGTATTCTGAAAATTAACTTATCGCAAGAGAATAAAATATCAATTGAAATGGCTGATTGGCTTGGCATAAACCCTCTTTTTGTTGACCGACTTGTAAAAGAACAGTCAAAGTTCTAAAAGTGTTTGTTTTCATTTTCACATTTTCCTTTTTCTATTGACATTAAATGTTGCGGGGCCAGGGAAAAGAACAGTGTTCCTCATTTTTTCCATTAACAAGGTTGGTGCCAAAAATGGCGCAAGTACTTTTTCCTATCTACGATTGATTATGACTGCATTTATCATACGTTGAACGAAGCAAAAAGCATGTGATTTTTCTACCAACTGAGAAGAAAAAATCAGAAGGTTCCAAATAGCTAAGATACGCTGCAGAGATTTCGCCACACATTTCACCCACTTTAAAGCAAGAGAGAAAGTGACAACATCTTAACCCTCGCGCCAGAGTTGAATTTAATTTCATGATATTTGGATTTAACCTAATTGTTTGAGTTGTGAATTGTAATTGTTTTTGTTTAAGCTAGGAAGCAAACCTCAAAGAAAATTGAACTGGGAGTTCTATTTCCATGAACTGAAACTCTTTAATCAAAACTCCGATTTCAGAAAAATTAATTCAACTTCATAGACAGAATAATCGTAGATACTCACTTTCTCATTTGCTCGTCGAATGATCAGTCAATGTGTGTCGCAACTAGTGGCATTACTCCCTTACCGTAACCTACATTCATAGAGACGATAATATCCAAAGGCAGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGGAGACGGAACCGCCGTCAACCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTCAACTTCAGTCGTCGATGTTTCCGACAGCGGCAACCATTTTTATTGAAAAAAAAAAAAAAACGTAGGGAGCATGGGAAACACAGTGAGAATTTGCTATAGGGAATGGATTAGGAAAATGATATTATATAATTGATGAAGGATAGTACTTGTAATCTCGATGAAGAGGATAGGACGACACTGTTTAGCCTATGATTGGTCGGAATGTATAGTTTCACCCATTTTCTTCTCTTCTTTCTACTCTATACCACCTTGCCGACTACGATGCTTTACGCTTTTCTTGCGCTGCATTGCATCAACAGCCTACGCCGTCATTCACGCCAAGAGAGGACTGAATTTTAGAAAATTTGCACAAACCATCGTTCAATTATGACATTATACCCTCCAATTTTGTGCCACATCAATGAATAAACAAACAAATGAACGAATAGTCAAAATTTCATACAAACGCAAGGTTTGGACAGTGACGCATTAACTCTTCTAAGCTTTAGTTTTGATTGTTTTTATTTTTTTAAAGAAAATTCATCCAATAAGAAGAGTAAATACAACCACTCTCCCCAGTTATCTCATCCAAAAACAAAACTCAAATCTTTCAAAGAGGTGAAAGAAGCATATTGGTTCAAAAAGAACGTAGAGAAAGGCGCTATAGCAAGCCAATGTACAACTGAATTACCAAAGCACGAGTACTTGACAAAATCAATACTGCCTAAAGAATCGGCAATGTTGAAAACAATATTAGCTAAGCTTTTTGATTATTGGCTCTATTGCTAA

mRNA sequence

ATGAATCATCGCCAAGTAGTGTGTTGTTCATCCCTCGTCTTCTGTCTCCGAATCGCCGTGGAATTTCAGCTCAAACATACCCAGCGATGCTGCAAACAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGGAGACGGAACCGCCGTCAACCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTCAACTTCAGTCTTTCACCCATTTTCTTCTCTTCTTTCTACTCTATACCACCTTGCCGACTACGATGCTTTACGCTTTTCTTGCGCTGCATTGCATCAACAGCCTACGCCCCAATGTACAACTGAATTACCAAAGCACGAGTACTTGACAAAATCAATACTGCCTAAAGAATCGGCAATGTTGAAAACAATATTAGCTAAGCTTTTTGATTATTGGCTCTATTGCTAA

Coding sequence (CDS)

ATGAATCATCGCCAAGTAGTGTGTTGTTCATCCCTCGTCTTCTGTCTCCGAATCGCCGTGGAATTTCAGCTCAAACATACCCAGCGATGCTGCAAACAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGGAGACGGAACCGCCGTCAACCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTCAACTTCAGTCTTTCACCCATTTTCTTCTCTTCTTTCTACTCTATACCACCTTGCCGACTACGATGCTTTACGCTTTTCTTGCGCTGCATTGCATCAACAGCCTACGCCCCAATGTACAACTGAATTACCAAAGCACGAGTACTTGACAAAATCAATACTGCCTAAAGAATCGGCAATGTTGAAAACAATATTAGCTAAGCTTTTTGATTATTGGCTCTATTGCTAA

Protein sequence

MNHRQVVCCSSLVFCLRIAVEFQLKHTQRCCKQEEPVKLRMDSAAIEKSPTRRRNRRQPTALSLLSFRGFFSTSVFHPFSSLLSTLYHLADYDALRFSCAALHQQPTPQCTTELPKHEYLTKSILPKESAMLKTILAKLFDYWLYC
Homology
[Close]
BLAST of IVF0014964 vs. ExPASy TrEMBL
Match: A0A0A0LA48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730870 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.8e-38
Identity = 104/184 (56.52%), Postives = 115/184 (62.50%), Query Frame = 0 

Query: 1   MNHRQVVCCSSLVFCLRIAVEFQLKHTQRCCK----QEEPVKLRMDSAAIEKSPTRRRNR 60
           MNHRQ V        LRIAVEFQLKHT+RCCK    QEEPVKLRMDSAAIEKSPTR+RNR
Sbjct: 17  MNHRQAVLFIP-DLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRMDSAAIEKSPTRKRNR 76

Query: 61  RQPTALSLLSFRGFFSTSV---------------------------------FHPFSS-L 120
            Q TALSLLSFRGFF TSV                                 FHPFSS L
Sbjct: 77  LQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTVRNGNRELFHPFSSFL 136

Query: 121 LSTLYHLADYDALRFSCAALHQQPTPQCTTELPKHEYLTKSILPKESAMLKTILAKLFDY 147
           L+TL+HLADYDAL FSCAA       QCTTE+ K EYLTK I  ++   ++  ++K FDY
Sbjct: 137 LTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIEDWGNIENSISKDFDY 196

[Close]
BLAST of IVF0014964 vs. NCBI nr
Match: KAE8650975.1 (hypothetical protein Csa_001201 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 3.32e-25
Identity = 66/118 (55.93%), Postives = 70/118 (59.32%), Query Frame = 0 

Query: 41  MDSAAIEKSPTRRRNRRQPTALSLLSFRGFFSTSV------------------------- 100
           MDSAAIEKSPTR+RNR Q TALSLLSFRGFF TSV                         
Sbjct: 1   MDSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNT 60

Query: 101 --------FHPFSS-LLSTLYHLADYDALRFSCAALHQQPTPQCTTELPKHEYLTKSI 124
                   FHPFSS LL+TL+HLADYDAL FSCAA       QCTTE+ K EYLTK I
Sbjct: 61  VRNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLI 118

The following BLAST results are available for this feature:
BLAST of IVF0014964 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0014964 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA481.8e-3856.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730870 PE=4 SV=1[more]
BLAST of IVF0014964 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650975.13.32e-2555.93hypothetical protein Csa_001201 [Cucumis sativus][more]
BLAST of IVF0014964 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014964.1IVF0014964.1mRNA