IVF0014917 (gene) Melon (IVF77) v1

Overview


Name	IVF0014917
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Nascent polypeptide-associated complex subunit beta
Location	chr10: 18563198 .. 18563443 (+)
RNA-Seq Expression	IVF0014917
Synteny	IVF0014917

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTTGATTTTATCATTCCAAGTTCCATCATTCCAAATAATGTTGCATTTAACCATTTAACAATTTCCCTTGACAATAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACTGATGACAAAAGGCTCCAGAGTACCTTAAAGAGAACTGGGGTGAATGCTATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAGAGGGAAAATTTTCTTAG

mRNA sequence

ATGTATTTTGATTTTATCATTCCAAGTTCCATCATTCCAAATAATGTTGCATTTAACCATTTAACAATTTCCCTTGACAATAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACTGATGACAAAAGGCTCCAGAGTACCTTAAAGAGAACTGGGGTGAATGCTATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAGAGGGAAAATTTTCTTAG

Coding sequence (CDS)

ATGTATTTTGATTTTATCATTCCAAGTTCCATCATTCCAAATAATGTTGCATTTAACCATTTAACAATTTCCCTTGACAATAGAAAGAAGAAGGCAGTTCATAAGACCACCACAACTGATGACAAAAGGCTCCAGAGTACCTTAAAGAGAACTGGGGTGAATGCTATTCCTGCTATTGAGGAGGTCAACATTTTCAAGGATGATGTGGTTATCCAATTCAACAACCCAGAGGGAAAATTTTCTTAG

Protein sequence

MYFDFIIPSSIIPNNVAFNHLTISLDNRKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEGKFS

Homology

[Close]

BLAST of IVF0014917 vs. ExPASy Swiss-Prot
Match: Q9CAT7 (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.2e-18
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPE 78
          RKKKAVHKTTTTDDKRLQSTLKR GVN+IPAIEEVNIFKDDVVIQF NP+
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIFKDDVVIQFINPK 72

[Close]

BLAST of IVF0014917 vs. ExPASy Swiss-Prot
Match: Q9SMW7 (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPE 78
          RKKKAVHKT TTDDKRLQSTLKR GVN+IPAIEEVNIFKDDVVIQF NP+
Sbjct: 23 RKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIFKDDVVIQFINPK 72

[Close]

BLAST of IVF0014917 vs. ExPASy Swiss-Prot
Match: Q2KIY7 (Transcription factor BTF3 homolog 4 OS=Bos taurus OX=9913 GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDD-VVIQFNNPE 78
          RKKK VH+T T DDK+LQS+LK+  VN I  IEEVN+ KDD  VI FNNP+
Sbjct: 23 RKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPK 73

[Close]

BLAST of IVF0014917 vs. ExPASy Swiss-Prot
Match: Q5ZJG3 (Transcription factor BTF3 homolog 4 OS=Gallus gallus OX=9031 GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDD-VVIQFNNPE 78
          RKKK VH+T T DDK+LQS+LK+  VN I  IEEVN+ KDD  VI FNNP+
Sbjct: 23 RKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPK 73

[Close]

BLAST of IVF0014917 vs. ExPASy Swiss-Prot
Match: Q96K17 (Transcription factor BTF3 homolog 4 OS=Homo sapiens OX=9606 GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDD-VVIQFNNPE 78
          RKKK VH+T T DDK+LQS+LK+  VN I  IEEVN+ KDD  VI FNNP+
Sbjct: 23 RKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPK 73

[Close]

BLAST of IVF0014917 vs. ExPASy TrEMBL
Match: A0A7J0DAV5 (Nascent polypeptide-associated complex subunit beta OS=Actinidia rufa OX=165716 GN=Acr_00g0010550 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.4e-18
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 19  NHLTISLDNRKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEG 78
           N+ T +L+ RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G
Sbjct: 65  NNGTYALNYRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKG 124

[Close]

BLAST of IVF0014917 vs. ExPASy TrEMBL
Match: A0A067EX46 (Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis OX=2711 GN=CISIN_1g031135mg PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.5e-18
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 21 LTISLDNRKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPE 78
          LT++L++RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+
Sbjct: 6  LTLALNHRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPK 62

[Close]

BLAST of IVF0014917 vs. ExPASy TrEMBL
Match: A0A5B6WBT8 (Nascent polypeptide-associated complex subunit beta OS=Gossypium australe OX=47621 GN=btf3l4 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.7e-18
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEGKFS 82
          RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G++S
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFINPKGRYS 76

[Close]

BLAST of IVF0014917 vs. ExPASy TrEMBL
Match: A0A1U8LKG0 (Nascent polypeptide-associated complex subunit beta OS=Gossypium hirsutum OX=3635 GN=LOC107928335 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-17
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEGKF 81
          RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G++
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFINPKGRY 75

[Close]

BLAST of IVF0014917 vs. ExPASy TrEMBL
Match: A0A6A4L083 (Nascent polypeptide-associated complex subunit beta (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_16900 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.8e-17
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 18 FNHLTISLDNRKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPE 77
          +N+  + L+ RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+
Sbjct: 39 YNYNRLVLNFRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPK 98

[Close]

BLAST of IVF0014917 vs. NCBI nr
Match: GFS30166.1 (basic transcription factor 3 [Actinidia rufa])

HSP 1 Score: 99.4 bits (246), Expect = 4.69e-24
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 19  NHLTISLDNRKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEG 78
           N+ T +L+ RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G
Sbjct: 65  NNGTYALNYRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKG 124

[Close]

BLAST of IVF0014917 vs. NCBI nr
Match: KDO59689.1 (hypothetical protein CISIN_1g031135mg [Citrus sinensis])

HSP 1 Score: 98.6 bits (244), Expect = 5.33e-24
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 21 LTISLDNRKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEGKF 80
          LT++L++RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+ + 
Sbjct: 6  LTLALNHRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQA 65

[Close]

BLAST of IVF0014917 vs. NCBI nr
Match: KAA3479189.1 (basic transcription factor 3-like isoform X1 [Gossypium australe])

HSP 1 Score: 97.8 bits (242), Expect = 1.70e-23
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEGKFS 81
          RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G++S
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFINPKGRYS 76

[Close]

BLAST of IVF0014917 vs. NCBI nr
Match: GFZ05932.1 (basic transcription factor 3 [Actinidia rufa])

HSP 1 Score: 95.5 bits (236), Expect = 4.08e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEG 78
          RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKG 73

[Close]

BLAST of IVF0014917 vs. NCBI nr
Match: GFS30168.1 (basic transcription factor 3 [Actinidia rufa])

HSP 1 Score: 95.5 bits (236), Expect = 4.20e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPEG 78
          RKKKAVHKTTTTDDKRLQSTLKR GVNAIPAIEEVNIFKDDVVIQF NP+G
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKG 73

[Close]

BLAST of IVF0014917 vs. TAIR 10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC )

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPE 78
          RKKKAVHKTTTTDDKRLQSTLKR GVN+IPAIEEVNIFKDDVVIQF NP+
Sbjct: 23 RKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIFKDDVVIQFINPK 72

[Close]

BLAST of IVF0014917 vs. TAIR 10
Match: AT1G17880.1 (basic transcription factor 3 )

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-18
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 28 RKKKAVHKTTTTDDKRLQSTLKRTGVNAIPAIEEVNIFKDDVVIQFNNPE 78
          RKKKAVHKT TTDDKRLQSTLKR GVN+IPAIEEVNIFKDDVVIQF NP+
Sbjct: 23 RKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIFKDDVVIQFINPK 72

The following BLAST results are available for this feature:

BLAST of IVF0014917 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAT7	3.2e-18	92.00	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
Q9SMW7	1.6e-17	90.00	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
Q2KIY7	4.2e-10	64.71	Transcription factor BTF3 homolog 4 OS=Bos taurus OX=9913 GN=BTF3L4 PE=2 SV=1	[more]
Q5ZJG3	4.2e-10	64.71	Transcription factor BTF3 homolog 4 OS=Gallus gallus OX=9031 GN=BTF3L4 PE=2 SV=1	[more]
Q96K17	4.2e-10	64.71	Transcription factor BTF3 homolog 4 OS=Homo sapiens OX=9606 GN=BTF3L4 PE=1 SV=1	[more]

BLAST of IVF0014917 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0DAV5	4.4e-18	85.00	Nascent polypeptide-associated complex subunit beta OS=Actinidia rufa OX=165716 ...	[more]
A0A067EX46	7.5e-18	87.72	Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis OX=2711 G...	[more]
A0A5B6WBT8	9.7e-18	90.74	Nascent polypeptide-associated complex subunit beta OS=Gossypium australe OX=476...	[more]
A0A1U8LKG0	3.7e-17	90.57	Nascent polypeptide-associated complex subunit beta OS=Gossypium hirsutum OX=363...	[more]
A0A6A4L083	4.8e-17	81.67	Nascent polypeptide-associated complex subunit beta (Fragment) OS=Rhododendron w...	[more]

BLAST of IVF0014917 vs. NCBI nr


Match Name	E-value	Identity	Description
GFS30166.1	4.69e-24	85.00	basic transcription factor 3 [Actinidia rufa]	[more]
KDO59689.1	5.33e-24	83.61	hypothetical protein CISIN_1g031135mg [Citrus sinensis]	[more]
KAA3479189.1	1.70e-23	90.74	basic transcription factor 3-like isoform X1 [Gossypium australe]	[more]
GFZ05932.1	4.08e-23	94.12	basic transcription factor 3 [Actinidia rufa]	[more]
GFS30168.1	4.20e-23	94.12	basic transcription factor 3 [Actinidia rufa]	[more]

BLAST of IVF0014917 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73230.1	2.3e-19	92.00	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	1.1e-18	90.00	basic transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038187	NAC A/B domain superfamily	GENE3D	2.20.70.30		coord: 53..81 e-value: 5.1E-7 score: 31.3
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 41..77 e-value: 6.4E-11 score: 42.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 38..81 score: 10.418334
None	No IPR available	PANTHER	PTHR10351:SF60	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA	coord: 27..77
IPR039370	Transcription factor BTF3	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER	coord: 27..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014917.2	IVF0014917.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005854	nascent polypeptide-associated complex
cellular_component	GO:0042788	polysomal ribosome