IVF0014873 (gene) Melon (IVF77) v1

Overview
NameIVF0014873
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr08: 10256436 .. 10256603 (-)
RNA-Seq ExpressionIVF0014873
SyntenyIVF0014873
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCACGAGGAAGGCCAAGGCGAGCTAGGCAAGTAGTAATAGATGTTCCAGCTACTGGGAGTGCTAATAGACTACAACGATTAGATGAGATGTCTAGTAACCCACCTAACCCTATGGGCAAAACGTTAAGGAAAGCATGTTTAATCGCCTTGCTTAAAGAGTAG

mRNA sequence

ATGGCACCACGAGGAAGGCCAAGGCGAGCTAGGCAAGTAGTAATAGATGTTCCAGCTACTGGGAGTGCTAATAGACTACAACGATTAGATGAGATGTCTAGTAACCCACCTAACCCTATGGGCAAAACGTTAAGGAAAGCATGTTTAATCGCCTTGCTTAAAGAGTAG

Coding sequence (CDS)

ATGGCACCACGAGGAAGGCCAAGGCGAGCTAGGCAAGTAGTAATAGATGTTCCAGCTACTGGGAGTGCTAATAGACTACAACGATTAGATGAGATGTCTAGTAACCCACCTAACCCTATGGGCAAAACGTTAAGGAAAGCATGTTTAATCGCCTTGCTTAAAGAGTAG

Protein sequence

MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTLRKACLIALLKE
Homology
BLAST of IVF0014873 vs. ExPASy TrEMBL
Match: A0A5D3BWX9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00130 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTLRK 47
          MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKT+++
Sbjct: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTIKR 46

BLAST of IVF0014873 vs. ExPASy TrEMBL
Match: A0A5A7SND8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002910 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTL 45
          MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPM K +
Sbjct: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMEKRI 44

BLAST of IVF0014873 vs. ExPASy TrEMBL
Match: A0A5D3DZK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold880G00030 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGK 43
          M PRGRPR+ RQV  DVPAT S NR Q   EMSSNP   +G+
Sbjct: 1  MVPRGRPRQVRQVATDVPATRSINRAQAFGEMSSNPHELVGR 42

BLAST of IVF0014873 vs. NCBI nr
Match: TYK04211.1 (uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.67e-20
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTLRK 46
          MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKT+++
Sbjct: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTIKR 46

BLAST of IVF0014873 vs. NCBI nr
Match: KAA0025975.1 (uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 1.34e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTL 44
          MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPM K +
Sbjct: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMEKRI 44

BLAST of IVF0014873 vs. NCBI nr
Match: TYK29193.1 (uncharacterized protein E5676_scaffold880G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 3.55e-06
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGK 42
          M PRGRPR+ RQV  DVPAT S NR Q   EMSSNP   +G+
Sbjct: 1  MVPRGRPRQVRQVATDVPATRSINRAQAFGEMSSNPHELVGR 42

BLAST of IVF0014873 vs. NCBI nr
Match: KAA0041782.1 (uncharacterized protein E6C27_scaffold67G001450 [Cucumis melo var. makuwa] >TYK27071.1 uncharacterized protein E5676_scaffold95G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 2.74e-05
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTLRKACLIALLKE 55
          MAPRGR R+ RQV  DVP T S N  Q  DE+SSNP   +GK  ++  +  LL++
Sbjct: 1  MAPRGRSRQVRQVTRDVPTTRSFNEAQASDEVSSNPHGSVGKRHKEGMVDRLLQK 55

BLAST of IVF0014873 vs. NCBI nr
Match: KAA0058518.1 (uncharacterized protein E6C27_scaffold132G001120 [Cucumis melo var. makuwa] >TYK07228.1 uncharacterized protein E5676_scaffold606G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 6.52e-05
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 1  MAPRGRPRRARQVVIDVPATGSANRLQRLDEMSSNPPNPMGKTLRK 46
          + P+ R R+ RQV   VP TGSA R+Q  DE+SSNP +P+G+T +K
Sbjct: 18 IVPQRRLRQGRQVATIVPTTGSATRVQNSDEISSNPYDPIGQTAKK 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BWX93.1e-1593.48Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SND82.9e-1393.18Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DZK77.1e-0461.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK04211.13.67e-2093.48uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa][more]
KAA0025975.11.34e-1793.18uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa][more]
TYK29193.13.55e-0661.90uncharacterized protein E5676_scaffold880G00030 [Cucumis melo var. makuwa][more]
KAA0041782.12.74e-0549.09uncharacterized protein E6C27_scaffold67G001450 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0058518.16.52e-0552.17uncharacterized protein E6C27_scaffold132G001120 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014873.1IVF0014873.1mRNA