IVF0014864 (gene) Melon (IVF77) v1

Overview
NameIVF0014864
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRT_RNaseH domain-containing protein
Locationchr08: 17103540 .. 17103821 (-)
RNA-Seq ExpressionIVF0014864
SyntenyIVF0014864
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCCTATGTTAAGTTCCTAAAAGATATCTTGGCAAAAAAGAGAAGGATGAATGATTGTGAAACTGTGGCTCTAACGCAGGCAACAAGTGATGTCTTAAAAAATGGGGTACTAGAGAAGATGATAGACTGTAGAAGCTTCACAGTGCCTTATTCCATAAGCAAAATGGATCTAGGTCGTGCTTTATGTGACCTTGGAGCGAGCATTAACTTGATGCCTCTATCTATATTTAAAAAGTTAAAGATACGAGAGGTGCAACCGACTCATATGAGGCTCTAG

mRNA sequence

ATGCTTTCCTATGTTAAGTTCCTAAAAGATATCTTGGCAAAAAAGAGAAGGATGAATGATTGTGAAACTGTGGCTCTAACGCAGGCAACAAGTGATGTCTTAAAAAATGGGGTACTAGAGAAGATGATAGACTGTAGAAGCTTCACAGTGCCTTATTCCATAAGCAAAATGGATCTAGGTCGTGCTTTATGTGACCTTGGAGCGAGCATTAACTTGATGCCTCTATCTATATTTAAAAAGTTAAAGATACGAGAGGTGCAACCGACTCATATGAGGCTCTAG

Coding sequence (CDS)

ATGCTTTCCTATGTTAAGTTCCTAAAAGATATCTTGGCAAAAAAGAGAAGGATGAATGATTGTGAAACTGTGGCTCTAACGCAGGCAACAAGTGATGTCTTAAAAAATGGGGTACTAGAGAAGATGATAGACTGTAGAAGCTTCACAGTGCCTTATTCCATAAGCAAAATGGATCTAGGTCGTGCTTTATGTGACCTTGGAGCGAGCATTAACTTGATGCCTCTATCTATATTTAAAAAGTTAAAGATACGAGAGGTGCAACCGACTCATATGAGGCTCTAG

Protein sequence

MLSYVKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRALCDLGASINLMPLSIFKKLKIREVQPTHMRL
Homology
BLAST of IVF0014864 vs. ExPASy TrEMBL
Match: A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.8e-29
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0

Query: 1  MLSYVKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLG 60
          M SY KFL DILAKKRR+ND +T+AL QATSD+ KNGVLEKM    SF VP SI  MDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RALCDLGASINLMPLSIFKKLKIREVQPTHMR 93
            LCDLGASINLMPLSIFKKLKI+EVQPTHMR
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHMR 92

BLAST of IVF0014864 vs. ExPASy TrEMBL
Match: A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.8e-29
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0

Query: 1  MLSYVKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLG 60
          M SY KFL DILAKKRR+ND +T+AL QATSD+ KNGVLEKM    SF VP SI  MDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RALCDLGASINLMPLSIFKKLKIREVQPTHMR 93
            LCDLGASINLMPLSIFKKLKI+EVQPTHMR
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHMR 92

BLAST of IVF0014864 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 12  LAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRALCDLGASIN 71
           +AKK R NDCETVALT  TSD+LKNG  +KM DCRSFTVP SI+ MDLG  LCDLGASIN
Sbjct: 90  MAKKGRNNDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASIN 149

Query: 72  LMPLSIFKKLKIREVQPTHMRL 94
           LMPLSIFKKL+I EVQP HMRL
Sbjct: 150 LMPLSIFKKLEIEEVQPMHMRL 171

BLAST of IVF0014864 vs. ExPASy TrEMBL
Match: A0A5D3BM69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00120 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 0

Query: 5   VKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRALC 64
           VKFLKDIL KKR++ND + VALTQAT+++ KNGV +KM D  SFT+PYSI  +DLGRALC
Sbjct: 13  VKFLKDILVKKRKINDFKNVALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALC 72

Query: 65  DLGASINLMPLSIFKKLKIREVQPTHMRL 94
           +L A++NL+PLSIFKKLKI EVQPTHMRL
Sbjct: 73  ELRATMNLLPLSIFKKLKIGEVQPTHMRL 101

BLAST of IVF0014864 vs. ExPASy TrEMBL
Match: A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.9e-27
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 12 LAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRALCDLGASIN 71
          +AKK R NDCETVALT  TSD+LKNG  +KM DCRSFTVP SI+ MDLG  LCDLGASIN
Sbjct: 1  MAKKGRNNDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASIN 60

Query: 72 LMPLSIFKKLKIREVQPTHMRL 94
          LMPLSIFKKL+I EVQP HMRL
Sbjct: 61 LMPLSIFKKLEIEEVQPMHMRL 82

BLAST of IVF0014864 vs. NCBI nr
Match: XP_008447648.1 (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 137 bits (344), Expect = 1.64e-38
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0

Query: 1  MLSYVKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLG 60
          M SY KFL DILAKKRR+ND +T+AL QATSD+ KNGVLEKM    SF VP SI  MDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RALCDLGASINLMPLSIFKKLKIREVQPTHMR 92
            LCDLGASINLMPLSIFKKLKI+EVQPTHMR
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHMR 92

BLAST of IVF0014864 vs. NCBI nr
Match: TYK11898.1 (uncharacterized protein E5676_scaffold177G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 8.57e-36
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 4   YVKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRAL 63
           YVKFLKDILAKKRRMN  E VAL+QAT DV  NG LEKM D RSF +P SI  MDLGRA 
Sbjct: 64  YVKFLKDILAKKRRMNHYEIVALSQATRDVFNNGALEKMTDPRSFIIPCSIGGMDLGRAQ 123

Query: 64  CDLGASINLMPLSIFKKLKIREVQPTHMRL 93
           CDLGASINLM LSIFKKL I EVQPT M L
Sbjct: 124 CDLGASINLMSLSIFKKLGIGEVQPTQMTL 153

BLAST of IVF0014864 vs. NCBI nr
Match: KAA0037872.1 (uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98010.1 uncharacterized protein E5676_scaffold487G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 9.26e-36
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0

Query: 1  MLSYVKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLG 60
          M SY KFL DILAKKRR+ND +T+AL QATSD+ KNGVLEKM    SF VP SI  MDLG
Sbjct: 1  MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61 RALCDLGASINLMPLSIFKKLKIREVQPTHMR 92
            LCDLGASINLMPLSIFKKLKI+EVQPTHMR
Sbjct: 61 HVLCDLGASINLMPLSIFKKLKIKEVQPTHMR 92

BLAST of IVF0014864 vs. NCBI nr
Match: XP_008465121.1 (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 129 bits (323), Expect = 3.36e-35
Identity = 64/82 (78.05%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 12 LAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRALCDLGASIN 71
          +AKK R NDCETVALT  TSD+LKNG  +KM DCRSFTVP SI+ MDLG  LCDLGASIN
Sbjct: 1  MAKKGRNNDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASIN 60

Query: 72 LMPLSIFKKLKIREVQPTHMRL 93
          LMPLSIFKKL+I EVQP HMRL
Sbjct: 61 LMPLSIFKKLEIEEVQPMHMRL 82

BLAST of IVF0014864 vs. NCBI nr
Match: TYJ99425.1 (uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 5.40e-34
Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 0

Query: 5   VKFLKDILAKKRRMNDCETVALTQATSDVLKNGVLEKMIDCRSFTVPYSISKMDLGRALC 64
           VKFLKDIL KKR++ND + VALTQAT+++ KNGV +KM D  SFT+PYSI  +DLGRALC
Sbjct: 13  VKFLKDILVKKRKINDFKNVALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALC 72

Query: 65  DLGASINLMPLSIFKKLKIREVQPTHMRL 93
           +L A++NL+PLSIFKKLKI EVQPTHMRL
Sbjct: 73  ELRATMNLLPLSIFKKLKIGEVQPTHMRL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BDT24.8e-2977.17RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3BHX34.8e-2977.17uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=... [more]
A0A5A7VJ955.9e-2778.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BM695.9e-2771.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CN555.9e-2778.05uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=... [more]
Match NameE-valueIdentityDescription
XP_008447648.11.64e-3877.17PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo][more]
TYK11898.18.57e-3676.67uncharacterized protein E5676_scaffold177G00610 [Cucumis melo var. makuwa][more]
KAA0037872.19.26e-3677.17uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98... [more]
XP_008465121.13.36e-3578.05PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
TYJ99425.15.40e-3471.91uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 25..93
e-value: 6.0E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 4..93
NoneNo IPR availablePANTHERPTHR33067:SF17SUBFAMILY NOT NAMEDcoord: 4..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014864.2IVF0014864.2mRNA