IVF0014763 (gene) Melon (IVF77) v1

Overview


Name	IVF0014763
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	chr09: 18943836 .. 18944126 (-)
RNA-Seq Expression	IVF0014763
Synteny	IVF0014763

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCACAAACTGGAACCTCCAGTCGCCACCGCGCCAGACCCACCACCGCCCTTCTCCTCTTTTTCTGGGTCCTTCTCATTTTAGCTCCGACTACCCTATGTCTTCACCTTCCCCCGCCGCCCCCGCCGTCAAGGAAATTAGCCCGGTTCTCCACGGCGTCCTTTCGCCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTCTCGACCGCCGTCAGCCCGCCTCCGCGTACCGCGAAGACAAGAGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

mRNA sequence

ATGACACCACAAACTGGAACCTCCAGTCGCCACCGCGCCAGACCCACCACCGCCCTTCTCCTCTTTTTCTGGGTCCTTCTCATTTTAGCTCCGACTACCCTATGTCTTCACCTTCCCCCGCCGCCCCCGCCGTCAAGGAAATTAGCCCGGTTCTCCACGGCGTCCTTTCGCCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTCTCGACCGCCGTCAGCCCGCCTCCGCGTACCGCGAAGACAAGAGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGACACCACAAACTGGAACCTCCAGTCGCCACCGCGCCAGACCCACCACCGCCCTTCTCCTCTTTTTCTGGGTCCTTCTCATTTTAGCTCCGACTACCCTATGTCTTCACCTTCCCCCGCCGCCCCCGCCGTCAAGGAAATTAGCCCGGTTCTCCACGGCGTCCTTTCGCCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTCTCGACCGCCGTCAGCCCGCCTCCGCGTACCGCGAAGACAAGAGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN

Homology

[Close]

BLAST of IVF0014763 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 39/102 (38.24%), Postives = 45/102 (44.12%), Query Frame = 0


Query: 6  GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
          G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12 GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66 SFRHAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 97
           FR         P    D       Y +DKR++HTGPNPLHN
Sbjct: 72 PFR--------GPLSRDD------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of IVF0014763 vs. ExPASy Swiss-Prot
Match: Q8S8M2 (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.0e-04
Identity = 23/60 (38.33%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 37  HLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 96
           H P  P   RK   F   +   AP  T +   +  +       Y++DKRL+HTGPNPLHN
Sbjct: 47  HYPSLP---RKAGHFHEMASFQAPKATVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of IVF0014763 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
          MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61 PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 97
          PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of IVF0014763 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
          MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61 PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 97
          PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of IVF0014763 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.6e-38
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
          MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61 PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 97
          PTTTTSPAEL DR Q    A+AY E+KRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of IVF0014763 vs. ExPASy TrEMBL
Match: A0A2I0JLZ3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_022328 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 20 LLFFWVLLILAPTTLCL-------HLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLD 79
          ++  WV++I +  +  L       H P  PP SRK   FST S  H P ++       +D
Sbjct: 14 MMLLWVVVISSEVSFLLADHERDDHAPLYPPSSRKSRFFSTVSVVHMPTSSPPLAGPSVD 73

Query: 80 RRQPASAYREDKRLIHTGPNPLHN 97
             P   Y EDKR+IHTGPNPLHN
Sbjct: 74 -PDPNKLYEEDKRIIHTGPNPLHN 96

[Close]

BLAST of IVF0014763 vs. ExPASy TrEMBL
Match: A0A2C9UGH5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G129400 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   PQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPP-----SRKLARFSTASFR 62
           PQ G  SR   R   A+  F WVLLI A   L   +            RK+    T SF 
Sbjct: 28  PQGGVESRGGRRNAAAIFFFLWVLLIFAQLGLFYAVHEETGKLVKSLPRKVRFLETQSF- 87

Query: 63  HAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 97
           HAP ++    +  ++   P S Y +DKR+IHTGPNPLHN
Sbjct: 88  HAPQSSQVQSSVGVE-GDPESVYGDDKRIIHTGPNPLHN 124

[Close]

BLAST of IVF0014763 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (500), Expect = 1.78e-63
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
          MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP
Sbjct: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61 PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 96
          PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of IVF0014763 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 167 bits (424), Expect = 7.71e-52
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60
          MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1  MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61 PTTTTSPAELLDRRQPAS---AYREDKRLIHTGPNPLHN 96
          PTTTTSPAEL DR Q A+   AY E+KRLIHTGPNPLHN
Sbjct: 61 PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of IVF0014763 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113 bits (282), Expect = 3.39e-30
Identity = 70/104 (67.31%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1  MTPQTGTSSRHRA--RPTTALLLFFWVLLILAP--TTLCLHLPPPPPPSRKLARFSTASF 60
          M  +T T SRH A    TTAL+LF WVLLILAP  TTLC  LPP P   RKL RFSTASF
Sbjct: 1  MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 60

Query: 61 RHAPPTTTTSPAELLDRRQP----ASAYREDKRLIHTGPNPLHN 96
          RHAPP T  SPAELL RRQ     A+AY ++KRLIHTGPNPLHN
Sbjct: 61 RHAPPAT--SPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of IVF0014763 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 7.56e-28
Identity = 60/96 (62.50%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 7  TSSRHRARPTTA--LLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66
          T + H +  TTA   LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61

Query: 67 TSPAELLDRRQPASA----YREDKRLIHTGPNPLHN 96
          TSP ELL  R  ++A    Y +DKRLIHTGPNPLHN
Sbjct: 62 TSPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of IVF0014763 vs. NCBI nr
Match: KAG7032578.1 (hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106 bits (265), Expect = 1.10e-27
Identity = 60/97 (61.86%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 7  TSSRHRARPTTA--LLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAPPTTT 66
          T + H +  TTA   LLFFWVLLI  P TLCLHLPPPPP SRKL  FSTAS  HA     
Sbjct: 2  TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61

Query: 67 TSPAELLDRRQPASA-----YREDKRLIHTGPNPLHN 96
          TSP ELL  R  ++A     Y +DKRLIHTGPNPLHN
Sbjct: 62 TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 93

[Close]

BLAST of IVF0014763 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 39/102 (38.24%), Postives = 45/102 (44.12%), Query Frame = 0


Query: 6  GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
          G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12 GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66 SFRHAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 97
           FR         P    D       Y +DKR++HTGPNPLHN
Sbjct: 72 PFR--------GPLSRDD------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of IVF0014763 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 39/102 (38.24%), Postives = 45/102 (44.12%), Query Frame = 0


Query: 6  GTSSRHRARPTTALLLFFWVLLILAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
          G   R     T    LFF+V  +     L          LHL   PPPPP RK  R+STA
Sbjct: 12 GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66 SFRHAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 97
           FR         P    D       Y +DKR++HTGPNPLHN
Sbjct: 72 PFR--------GPLSRDD------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of IVF0014763 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-05
Identity = 23/60 (38.33%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 37  HLPPPPPPSRKLARFSTASFRHAPPTTTTSPAELLDRRQPASAYREDKRLIHTGPNPLHN 96
           H P  P   RK   F   +   AP  T +   +  +       Y++DKRL+HTGPNPLHN
Sbjct: 47  HYPSLP---RKAGHFHEMASFQAPKATVSFTGQRREEENRDEVYKDDKRLVHTGPNPLHN 103

The following BLAST results are available for this feature:

BLAST of IVF0014763 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	2.0e-06	38.24	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]
Q8S8M2	7.0e-04	38.33	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 P...	[more]

BLAST of IVF0014763 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TY55	4.1e-47	100.00	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	4.1e-47	100.00	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A0A0KSY2	2.6e-38	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A2I0JLZ3	1.1e-04	40.48	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_022328 PE=4 SV=1	[more]
A0A2C9UGH5	2.5e-04	39.39	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G129400 PE=4 SV=...	[more]

BLAST of IVF0014763 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437694.1	1.78e-63	100.00	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
XP_011656246.1	7.71e-52	84.85	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
KAG7016766.1	3.39e-30	67.31	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601877.1	7.56e-28	62.50	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7032578.1	1.10e-27	61.86	hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of IVF0014763 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	1.4e-07	38.24	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.4e-07	38.24	CLAVATA3/ESR-RELATED 17	[more]
AT2G01505.1	5.0e-05	38.33	CLAVATA3/ESR-RELATED 16	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..90
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 4..96
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 4..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014763.1	IVF0014763.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010078	maintenance of root meristem identity
biological_process	GO:0010088	phloem development
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0048731	system development
cellular_component	GO:0110165	cellular anatomical entity