IVF0014705 (gene) Melon (IVF77) v1

Overview


Name	IVF0014705
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-H2 finger protein ATL72
Location	chr03: 18220749 .. 18221736 (-)
RNA-Seq Expression	IVF0014705
Synteny	IVF0014705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGGTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAGTAGATGAAATTACCTGATTTCAAGGGTTTGCATATTATTTTCATTTGCACATAAATATTCTTTAATTGTTTCAGTTTCCTTTTTAGCGTTTCTTAAGTATTAATAATCTGGATTATACACTAATTAATACAATTAGTGCTTAATTATGAGTTATGTACAATAAATAACCGCATAATTTTCAAATTTTAGGTTTCTTTTTTTTCCTTTTTGTTTTGTTACCACACCTGGTTGAGTGAGGATTTCAACCTAAACTGGAGTTCACGAGGACATATGATTTCTAGTGATTTTTTTTTATCCCATAATAACTTTAAATATCTTACCGTTATAGGTAAATGTTATGTTCTTAAGAGATACAGAAGTTCATTGATGATTATTGTCAAATTACTTCACCAATAA

mRNA sequence

ATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGGTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAAGATACAGAAGTTCATTGATGATTATTGTCAAATTACTTCACCAATAA

Coding sequence (CDS)

ATGACGATGGAGTCCAATCACCACCGTCCGCGCTCTCACCGCCTCCTCCTCGACGCCGACACGACGGCAGCACCGTCCAACGGAAGCAGAACGCGAAATTCATATAACAACGAAGCCAATTTCGATACAAACATGGTGATAATTCTTGCCGCTTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCCTCCGGTGCAGCCGACGGTTCGCCTTCGAAACAGGCGGCGGCACAGCCTCGCGTCTCACTGCTTCAGGGCTAAAGAAAAGCGCATTACGCCAAATTCCGGTCGCGGTATACGGCTCGGAAACAGGCCTAGAGATCCGAGAAACGGATTGCCCTATCTGCCTAGGAGATTTCATCGCCGGCGAGAAAATCAAAGTACTCCCCAAATGTAACCACGGATTTCACGTTCGATGTATCGATACCTGGTTAGCTTCCCACTCGTCGTGTCCGACATGTCGTCAATCACTGGTGGAACAACAGTCGGTTTCTGAATCGGCGGGAGCAGAGGCCGGTAACCGACCCGCCGGAAATTCATCGGCTAGCGGGCAAGGTGAGATCTCGATAACAAGATACAGAAGTTCATTGATGATTATTGTCAAATTACTTCACCAATAA

Protein sequence

MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRPAGNSSASGQGEISITRYRSSLMIIVKLLHQ

Homology

[Close]

BLAST of IVF0014705 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-43
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 14  RLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQAN-APANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           A+GLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL+ +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of IVF0014705 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.9e-43
Identity = 87/149 (58.39%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 21  TTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLVEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSL+E Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of IVF0014705 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.2e-41
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  HRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKI 132
               +     GT +    +GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of IVF0014705 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-38
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 18  DADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGT-ASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLP 137
            E GG     RLT +G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of IVF0014705 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.9e-31
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAS---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    S   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLVE 167
           H +CP CR  LVE
Sbjct: 170 HLTCPKCRNCLVE 182

[Close]

BLAST of IVF0014705 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.0e-104
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 182
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSASGQGEISIT 198
           AGNSSASGQGEISIT
Sbjct: 181 AGNSSASGQGEISIT 195

[Close]

BLAST of IVF0014705 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.5e-97
Identity = 185/197 (93.91%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISIT 198
           R AGNSSASGQGEISIT
Sbjct: 181 RGAGNSSASGQGEISIT 197

[Close]

BLAST of IVF0014705 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93
Identity = 175/196 (89.29%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISI 197
           RPAGNSSASGQGEISI
Sbjct: 181 RPAGNSSASGQGEISI 196

[Close]

BLAST of IVF0014705 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.3e-93
Identity = 175/196 (89.29%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISI 197
           RPAGN SASGQGEISI
Sbjct: 181 RPAGNPSASGQGEISI 196

[Close]

BLAST of IVF0014705 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.3e-89
Identity = 169/192 (88.02%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR R HR LLD D TA PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL A+GLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RPAGNSSASGQG 193
           RPAGNSSA GQG
Sbjct: 181 RPAGNSSAGGQG 192

[Close]

BLAST of IVF0014705 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa])

HSP 1 Score: 385 bits (988), Expect = 2.64e-134
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 3   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 62
           MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 182
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSASGQGEISIT 197
           AGNSSASGQGEISIT
Sbjct: 181 AGNSSASGQGEISIT 195

[Close]

BLAST of IVF0014705 vs. NCBI nr
Match: XP_011656436.1 (RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protein Csa_005410 [Cucumis sativus])

HSP 1 Score: 365 bits (938), Expect = 2.02e-126
Identity = 189/212 (89.15%), Postives = 196/212 (92.45%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M MESNHHRPR  RLLLD DTTA PSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRLTA+GLKKSALRQIPVAVYGSETGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQSVSESA  EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSASGQGEISITRYRSSLMIIVKLLHQ 212
           R AGNSSASGQG   +     +LMII+KLLHQ
Sbjct: 181 RGAGNSSASGQGIEKL-----ALMIILKLLHQ 207

[Close]

BLAST of IVF0014705 vs. NCBI nr
Match: XP_038885444.1 (RING-H2 finger protein ATL74-like [Benincasa hispida])

HSP 1 Score: 357 bits (917), Expect = 1.22e-122
Identity = 181/192 (94.27%), Postives = 186/192 (96.88%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           MTMESNHHRPR HRLLLDADTTAAPSNGSRTRNSY+NEANFDTNMVIILAALLCALI AL
Sbjct: 1   MTMESNHHRPRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALIFAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETGGGTASRL A+GLKKSALRQIPVAVYGSE+GL+IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLKIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAEAEAGN 180

Query: 181 RPAGNSSASGQG 192
            PAGNSSASGQG
Sbjct: 181 PPAGNSSASGQG 192

[Close]

BLAST of IVF0014705 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350 bits (899), Expect = 1.04e-120
Identity = 176/196 (89.80%), Postives = 184/196 (93.88%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISI 196
           RPAGNSSASGQGEISI
Sbjct: 181 RPAGNSSASGQGEISI 196

[Close]

BLAST of IVF0014705 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 349 bits (895), Expect = 4.24e-120
Identity = 175/196 (89.29%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MTMESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60
           M M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGN 180
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSASGQGEISI 196
           RPAGNSSASGQGEISI
Sbjct: 181 RPAGNSSASGQGEISI 196

[Close]

BLAST of IVF0014705 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-44
Identity = 95/163 (58.28%), Postives = 114/163 (69.94%), Query Frame = 0


Query: 14  RLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQAN-APANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFETGGGTASR--------LTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGD 133
           RRF  +     AS           A+GLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGSGI-IDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQ 169
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL+ +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of IVF0014705 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 7.0e-44
Identity = 87/149 (58.39%), Postives = 109/149 (73.15%), Query Frame = 0


Query: 21  TTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFET 80
           T A P     + ++  N A+ DT+MVIILAALLCALICALG+NS++RC LRC+RRF    
Sbjct: 17  TDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNE 76

Query: 81  GGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNH 140
                +   A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF+ GE ++VLPKCNH
Sbjct: 77  DPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNH 136

Query: 141 GFHVRCIDTWLASHSSCPTCRQSLVEQQS 170
           GFHV+CIDTWL SHSSCPTCRQSL+E Q+
Sbjct: 137 GFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of IVF0014705 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-42
Identity = 85/154 (55.19%), Postives = 107/154 (69.48%), Query Frame = 0


Query: 13  HRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HRLLL++      ++GS   + Y  + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKI 132
               +     GT +    +GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVA--DRAGLKKRELKKFPVAEYGSGE-VKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of IVF0014705 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-39
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 18  DADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFA 77
           D   T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 78  FETGGGT-ASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLP 137
            E GG     RLT +G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 138 KCNHGFHVRCIDTWLASHSSCPTCRQSLVE 167
            C+HGFHVRCID WL+SHSSCPTCR  L++
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178

[Close]

BLAST of IVF0014705 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-32
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 37  NEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETGGGTASRLTAS---GL 96
           +E N   N++++L+ L+C +IC LGL+ I+RCALR S RF       + S    S   G+
Sbjct: 50  HENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGI 109

Query: 97  KKSALRQIPVAVYGSETGLEIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLAS 156
           KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNHGFHVRCID WL  
Sbjct: 110 KKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 169

Query: 157 HSSCPTCRQSLVE 167
           H +CP CR  LVE
Sbjct: 170 HLTCPKCRNCLVE 182

The following BLAST results are available for this feature:

BLAST of IVF0014705 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	2.0e-43	58.28	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	9.9e-43	58.39	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	4.2e-41	55.19	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	3.3e-38	51.33	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	3.9e-31	48.87	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of IVF0014705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXT6	8.0e-104	100.00	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KAH2	1.5e-97	93.91	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A6J1FF16	6.3e-93	89.29	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	8.3e-93	89.29	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A6J1BZW4	4.3e-89	88.02	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of IVF0014705 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052006.1	2.64e-134	100.00	RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 fing...	[more]
XP_011656436.1	2.02e-126	89.15	RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protei...	[more]
XP_038885444.1	1.22e-122	94.27	RING-H2 finger protein ATL74-like [Benincasa hispida]	[more]
XP_023550807.1	1.04e-120	89.80	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
XP_022938777.1	4.24e-120	89.29	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]

BLAST of IVF0014705 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	1.4e-44	58.28	RING/U-box superfamily protein	[more]
AT5G05280.1	7.0e-44	58.39	RING/U-box superfamily protein	[more]
AT5G01880.1	3.0e-42	55.19	RING/U-box superfamily protein	[more]
AT1G49230.1	2.3e-39	51.33	RING/U-box superfamily protein	[more]
AT1G49220.1	2.8e-32	48.87	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 2.5E-13 score: 50.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..166 e-value: 1.2E-22 score: 81.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 13..180
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 13..180
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 118..161 e-value: 3.78152E-17 score: 70.0233
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014705.2	IVF0014705.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane