IVF0014681 (gene) Melon (IVF77) v1

Overview
NameIVF0014681
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr02: 4471193 .. 4471423 (+)
RNA-Seq ExpressionIVF0014681
SyntenyIVF0014681
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTCCAACTACTAGGAGTGCTAATAGAGTGCAAGGATCAAATGAGATGTCTCGTAACCCACATAACACTACCGAGCAAAATGTAGAAGAAAGCATGTTTAATCACTTCGGTCAGAGAGTAGTTGATCATCGTATGCCCATAAACTCTAATGTAGTCAAGAGGTTTGACATTGAGAGGGTAAAGGCATTGAGAGCAATCATTGAGACAGATGGCCAATCTGAATGA

mRNA sequence

ATGGATGTTCCAACTACTAGGAGTGCTAATAGAGTGCAAGGATCAAATGAGATGTCTCGTAACCCACATAACACTACCGAGCAAAATGTAGAAGAAAGCATGTTTAATCACTTCGGTCAGAGAGTAGTTGATCATCGTATGCCCATAAACTCTAATGTAGTCAAGAGGTTTGACATTGAGAGGGTAAAGGCATTGAGAGCAATCATTGAGACAGATGGCCAATCTGAATGA

Coding sequence (CDS)

ATGGATGTTCCAACTACTAGGAGTGCTAATAGAGTGCAAGGATCAAATGAGATGTCTCGTAACCCACATAACACTACCGAGCAAAATGTAGAAGAAAGCATGTTTAATCACTTCGGTCAGAGAGTAGTTGATCATCGTATGCCCATAAACTCTAATGTAGTCAAGAGGTTTGACATTGAGAGGGTAAAGGCATTGAGAGCAATCATTGAGACAGATGGCCAATCTGAATGA

Protein sequence

MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIERVKALRAIIETDGQSE
Homology
BLAST of IVF0014681 vs. ExPASy TrEMBL
Match: A0A5D3DWI1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00290 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.0e-24
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
          MDVPTTRSANRVQGSNEMS NPHNTTEQNVEESMFN+FGQRVVDHRMPINSNVVKRFDIE
Sbjct: 5  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 64

Query: 61 RVKA 65
          R K+
Sbjct: 65 RQKS 68

BLAST of IVF0014681 vs. ExPASy TrEMBL
Match: A0A5A7TFU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001010 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNV 54
           MDVPTTRSANRVQGSNEMSRNPHNTTE+NVEESMFNHFGQRVVDHRMPINSNV
Sbjct: 50  MDVPTTRSANRVQGSNEMSRNPHNTTEKNVEESMFNHFGQRVVDHRMPINSNV 102

BLAST of IVF0014681 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.2e-13
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F QRV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIE 64

Query: 61 RVKALRA 68
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0014681 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F +RV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIE 64

Query: 61 RVKALRA 68
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0014681 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
           + VP TR ANR Q S ++S NPH++  QNVEESMF+ F QR+ DH MPI S V KRF IE
Sbjct: 35  ISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIE 94

Query: 61  RVKALRAI 69
           R+KAL A+
Sbjct: 95  RLKALGAM 102

BLAST of IVF0014681 vs. NCBI nr
Match: TYK27665.1 (uncharacterized protein E5676_scaffold93G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 2.19e-32
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
          MDVPTTRSANRVQGSNEMS NPHNTTEQNVEESMFN+FGQRVVDHRMPINSNVVKRFDIE
Sbjct: 5  MDVPTTRSANRVQGSNEMSCNPHNTTEQNVEESMFNYFGQRVVDHRMPINSNVVKRFDIE 64

Query: 61 RVKA 64
          R K+
Sbjct: 65 RQKS 68

BLAST of IVF0014681 vs. NCBI nr
Match: KAA0042304.1 (uncharacterized protein E6C27_scaffold824G001010 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 2.98e-27
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNV 53
           MDVPTTRSANRVQGSNEMSRNPHNTTE+NVEESMFNHFGQRVVDHRMPINSNV
Sbjct: 50  MDVPTTRSANRVQGSNEMSRNPHNTTEKNVEESMFNHFGQRVVDHRMPINSNV 102

BLAST of IVF0014681 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 6.20e-19
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F QRV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIE 64

Query: 61 RVKALRA 67
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0014681 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.77e-18
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
          M+V +  SANR QG +EMS NPH+T  QNVEESMFN F +RV DH +PI SNV KR  IE
Sbjct: 5  MNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIE 64

Query: 61 RVKALRA 67
          R+KAL A
Sbjct: 65 RIKALGA 71

BLAST of IVF0014681 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.21e-17
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1   MDVPTTRSANRVQGSNEMSRNPHNTTEQNVEESMFNHFGQRVVDHRMPINSNVVKRFDIE 60
           + VP TR ANR Q S ++S NPH++  QNVEESMF+ F QR+ DH MPI S V KRF IE
Sbjct: 35  ISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIE 94

Query: 61  RVKALRAI 68
           R+KAL A+
Sbjct: 95  RLKALGAM 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DWI15.0e-2493.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TFU73.4e-2098.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UFQ15.2e-1365.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DVY71.2e-1264.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TVM14.4e-1260.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK27665.12.19e-3293.75uncharacterized protein E5676_scaffold93G00290 [Cucumis melo var. makuwa][more]
KAA0042304.12.98e-2798.11uncharacterized protein E6C27_scaffold824G001010 [Cucumis melo var. makuwa][more]
KAA0054080.16.20e-1965.67hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
TYK27664.11.77e-1864.18uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0047014.11.21e-1760.29hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014681.1IVF0014681.1mRNA