IVF0014652 (gene) Melon (IVF77) v1

Overview


Name	IVF0014652
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	chr09: 14879966 .. 14884078 (+)
RNA-Seq Expression	IVF0014652
Synteny	IVF0014652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGATAAGGAAACGAAAAAACATACTATGTTAGCATACCATGCTAGCATAGTATATAGTCGAGGAAACCTTTTTTTTGTTGGAATCGTACGAAAAACTTCTTTTTCTGTAGAGTTATTATAAATAAAATTAGAAAAAAGAAAAAAAAAAAGAGATCGAGAAGAGAGAAAGTACCCGAGGAGAAGGGAGGTGGGAGTGGAGGAGGAAGAAGAAGGAAAGGAGAAAGAAGGAAGATTGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGGGCGACCGTTTCTGGGCATACGTTTCTTGCAGAGGAGGGGAGTGGAAGCGAAGGCGGGGACGGCGGAGGAGAGATCATCGACGACGGGTTGCCGGGTTGACCCAACCCAACCCGGTTTAAGGGTATATATATACACATATAAAAACCCTAAATTAACATTTTTCATTCTCATTTTGCCCCAAACCTTGCACGCAACTCAACCCCTCAGGCCTTCAGCGCTCGCAATCCCTTCGGCATTCAGACCTTCACATTCCGGCAACGTTCAGAACCACTCGCACGTTTCGGACTTCACATTCCGGCGAACTTTTCGGCCTTTTCTTTCAATCTCACTCTCTCCTTTGCCCTCTTCCTGCTTGACGCTTTTGCCGCTCCGCCATCTCTCTCCGTTCAGCGCCACCGCCGCCTCCTACCGGTATTCTCTCGTTCTCCATCTATGTCGTTATTCACTACTACTCATGTTAGAACTTGTGTAATGAAAGAAACAGGATGCTTTTGCTTTACCTATCGGAACAATTTTAGCATATAGTTAGGTTTGATGTTAATATCGATTGCTACTCAGATTTTCTTGGTTGAGAATCGATTCTTTCTAAGACTGTAAATTTGATTATGGTCCATTATCATATACCAATAATATCGGTTCGCAAGATCCCAAATTGAGTCGAGAAAACCCTATTCTGCCATTCTATTTTGCTGTTGTTATACACGTCAGTCTAGTTCTTACTTTAACCTGTCATTCTTAGATTATTGTTTCACTCCTAACTCTAATATTTTATGTTGAACTTTTTATACGCCGTAGGAGTTGCATTCATTGAATTCAAGTGGTTTTCCTTTAGTTAGAGGAAGCCAATATGTTTTTCACATAGTTCTGGAGAGGAATATGCAGCTACACCCTCGCCACTTTGGCCGTAACCTACGTGAGAACCTGGTGTCCAAACTGATGAAAGATGTTGAGGGCACCTGCAGGTTTGTTAACTGTTTTTCCTACCTTATTGTACACTAGAAAATTCATGTTGCTGTTATTTTCTTTTTGTTAATTTTGGAGAAAATATCTTGTGATAAGATGAATTACTAGATTTGATCTTGGATTATGAGTTGTTGGGTGGCATCCCATTAGCTTTATTTCACGGCTGTCCATTATAGGATTTCTTTCATTCTAGTTAACTTTTCTTCGTAGTACTTGTAATTGATGATTCAATAATGTTGAAACATATTGGTAATATGTTTATGGAGAGGCTTTGGACATCTGAGAAACACGTGAGAAAAGATAGTTGTTTTAATAGACATCTCAGGTTTTTACATTAGTTGTTTAAATAGACATTCAGCTCCCACTGAATCAATGAAACATCCAAGCTTCAATGGGGTGATGAACAGAGTCTGAAGAAGTTAATATTACTAATTGGGCCATTGATGTTGGTGGTAAAATATTAGCTGAGGGAAGTTTAAACCTTGTTTCGCTGGATTTTTCTTGTGTTGTATGATACACATAATTCTATTATGATGCATATGCATGTCACTTCTTCATTATATATTAAAATAGCATGTCAGTTCATGAACATATGAAAGTAGATAAAAATAGTTTGACCGATGATATTTCTTTTGAATGTTTGATACTTTGTTCAGCTAGTGAGTGGTTAGAGGGGTTTCGTTATTGAAAAATGTTTATATGTTGTCGCAGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGGTAAGTATATGTCACTTTTTTGCTATCTAGAAAGTAAAAAATATTTTAAAAAATTAAAACATTAATAATGTGCAACTATTGTAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTACATACTTTTAGCTCATTTCAGTTATCGTTTTTCTCCTTTTTGGCTCACTTTGATGTTACAAGCCACCAAGTGTCTTGAAGCTTCATTTATGAAACAATTCCTTACCAAATATAAGTGGGGTGGGACAACATGGTAGTGATGGTTAGCGAGGTTCCTTATGCCAATGAAACTTTGTCATGTTGTCCACAAAATTGTGCAATGCATATTTAGTGAGAACTAGAGAAGTAATATGAAAAAGTGGATTGTAAAAGTATTAAGAGAGATTCAGAAATTTGTTATGAATGTGTATCTGGTTCATTGTGCGGTTAAATATTTAAGCAAACGAACACTTTCTTAAGTTTCTAGTTTGTTGTTTGATACTTTTCAGCGTTGTTGTGCTATGTTAAATCCGATCAACATGCTGGCCTATCCATGAGATACAATTTTTTTCTTAGCACTACAAACACATGTATATTATGCTCAGCAACCCTATAACAAAATTTTCATTTCCAAGCTTTTCATATGGCAAATTCTATACCTGTCTTGGCTTCAAGCAACCATTATTTTATTTGTAATGAATTTATTTCCTAGCTTTCCAAGATGTTAGGTTGGCGATCAATACCAAAGTACCAAATCTAAATGGTTCAAACACCTACTTGAATTTACTCCCACCAAACTGAATTTGCAGCACCAACATCTTGGCTTTTATTCCTTTTATATATTATTCTCCCATGAGTGTGCTTAACCTTCACTAAACTCAACTCACATCTTGTGTTTCAGTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTATATTTCTATTTACATGCATTTTCTAGTATAGACTGATAATGCTCTCTTGACGTGTTAAATTTACTGAATTATCTTTGATCTCTTGTAGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTGTATTTCCTTCTCTTCCTTATTTAGTATTGTTTTTCTAAAATTTATTTGCTCTGTCCTTTGATGGTGCAAGTTAAATTTTCTTTTCTATGAAATATAATGCTTTGCCTTCATTCTTACCATTTTAAAATCAAAGGATGCCTTTGGTAGCAAAGGGTCTAAAGGCTCCTAAGTTTTTAAGAGTAATTTAAAATGTTTTCCCTTTTATCCCAGTTGTGGAGTAGTAGGGTGTATATGTTGATATTTTAATGACAGAAAAGATATACTATATACATCTATATAAGCCTGACCTGAATGATAGTTATGAGATTCTTTTTAACTTTTTAGGAGAAAGTCGAAAAGTTATAGTCGATTTATTTAGCATATATTCTCCCAAGTGGTGAGAATACTCAAAACTTAGCAACTCCACGTTAGTTGTTTTTGTGACTTTGATAGAATCTTTGTGCCATTATCAAATTCTGGAATCTGGCGTGTCTCATTTAACTATTATTTTGCTTGCAGTTTTGTATTGGAACCATAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCGGCTTAGTTCTTCATCTTTGATGCAAGTTTGTAGATTGTTATGTATTAACCTTGACATTGATAAAAGAAAATTCTAATTTTGCTGTATAGGCTCTGTTTTTTTCAACCGTTTATCCATTTATTTCTAGGGGGGGTTAAAATGAGAAGTATATTCCTAGGGTTAAATTATAAATTTCGAACCTTACAGTTTCGGGAAAGGCTATAATGTAATCTATTATGTTGTTTTAAAGGTTTTAACCTTCATGGTTAGATATAAACTCTAAATAGTCATTGTTGTTGGATACAACTTTCATGAATAATCTCTACAAATCTATATTTTTAATA

mRNA sequence

AGGATAAGGAAACGAAAAAACATACTATGTTAGCATACCATGCTAGCATAGTATATAGTCGAGGAAACCTTTTTTTTGTTGGAATCGTACGAAAAACTTCTTTTTCTGTAGAGTTATTATAAATAAAATTAGAAAAAAGAAAAAAAAAAAGAGATCGAGAAGAGAGAAAGTACCCGAGGAGAAGGGAGGTGGGAGTGGAGGAGGAAGAAGAAGGAAAGGAGAAAGAAGGAAGATTGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGGGCGACCGTTTCTGGGCATACGTTTCTTGCAGAGGAGGGGAGTGGAAGCGAAGGCGGGGACGGCGGAGGAGAGATCATCGACGACGGGTTGCCGGGTTGACCCAACCCAACCCGGTTTAAGGGTATATATATACACATATAAAAACCCTAAATTAACATTTTTCATTCTCATTTTGCCCCAAACCTTGCACGCAACTCAACCCCTCAGGCCTTCAGCGCTCGCAATCCCTTCGGCATTCAGACCTTCACATTCCGGCAACGTTCAGAACCACTCGCACGTTTCGGACTTCACATTCCGGCGAACTTTTCGGCCTTTTCTTTCAATCTCACTCTCTCCTTTGCCCTCTTCCTGCTTGACGCTTTTGCCGCTCCGCCATCTCTCTCCGTTCAGCGCCACCGCCGCCTCCTACCGGAGTTGCATTCATTGAATTCAAGTGGTTTTCCTTTAGTTAGAGGAAGCCAATATGTTTTTCACATAGTTCTGGAGAGGAATATGCAGCTACACCCTCGCCACTTTGGCCGTAACCTACGTGAGAACCTGGTGTCCAAACTGATGAAAGATGTTGAGGGCACCTGCAGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCGGCTTAGTTCTTCATCTTTGATGCAAGTTTGTAGATTGTTATGTATTAACCTTGACATTGATAAAAGAAAATTCTAATTTTGCTGTATAGGCTCTGTTTTTTTCAACCGTTTATCCATTTATTTCTAGGGGGGGTTAAAATGAGAAGTATATTCCTAGGGTTAAATTATAAATTTCGAACCTTACAGTTTCGGGAAAGGCTATAATGTAATCTATTATGTTGTTTTAAAGGTTTTAACCTTCATGGTTAGATATAAACTCTAAATAGTCATTGTTGTTGGATACAACTTTCATGAATAATCTCTACAAATCTATATTTTTAATA

Coding sequence (CDS)

ATGCAGCTACACCCTCGCCACTTTGGCCGTAACCTACGTGAGAACCTGGTGTCCAAACTGATGAAAGATGTTGAGGGCACCTGCAGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAGATGACTTCTTGGGTGTGA

Protein sequence

MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKMTSWV

Homology

[Close]

BLAST of IVF0014652 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 5.6e-83
Identity = 149/153 (97.39%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.9e-78
Identity = 141/153 (92.16%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GD+PNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIK
Sbjct: 131 DGSVKIQKECEVRLKIIGTRVDATAIFCVGTIK 163

[Close]

BLAST of IVF0014652 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-46
Identity = 84/151 (55.63%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 3   LHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKY 62
           LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+ G GFV +PVKY
Sbjct: 13  LHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKY 72

Query: 63  QCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSD 122
           + +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF  + + P Y T D
Sbjct: 73  KAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMD 132

Query: 123 GSVKIQKDSEVRLKIIGTRVDATEIFCIGTI 153
             + IQ+D E+RLKI+GTRVD  +IF IG++
Sbjct: 133 EDIVIQQDDEIRLKIVGTRVDKNDIFAIGSL 163

[Close]

BLAST of IVF0014652 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-46
Identity = 85/151 (56.29%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 3   LHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKY 62
           LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+ G GFV +PVKY
Sbjct: 13  LHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKY 72

Query: 63  QCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSD 122
           + +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF  + + P Y T D
Sbjct: 73  KAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVD 132

Query: 123 GSVKIQKDSEVRLKIIGTRVDATEIFCIGTI 153
             V IQ+D E+RLKI+GTRVD  +IF IG++
Sbjct: 133 EDVVIQQDDEIRLKIVGTRVDKNDIFAIGSL 163

[Close]

BLAST of IVF0014652 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-46
Identity = 84/151 (55.63%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 3   LHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKY 62
           LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I+ G GFV +PVKY
Sbjct: 13  LHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKY 72

Query: 63  QCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ-SGDVPNYTTSD 122
           + +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF  + + P Y T D
Sbjct: 73  KAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMD 132

Query: 123 GSVKIQKDSEVRLKIIGTRVDATEIFCIGTI 153
             + IQ+D E+RLKI+GTRVD  +IF IG++
Sbjct: 133 EDIVIQQDDEIRLKIVGTRVDKNDIFAIGSL 163

[Close]

BLAST of IVF0014652 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.4e-82
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. ExPASy TrEMBL
Match: A0A6J0ZV58 (DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=LOC110412415 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. ExPASy TrEMBL
Match: A0A2I4HHD1 (DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC109017848 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 312 bits (800), Expect = 5.81e-107
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 153
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. NCBI nr
Match: XP_022923594.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022990163.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_022990164.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023525602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6601991.1 hypothetical protein SDJN03_07224, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311 bits (797), Expect = 1.67e-106
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 153
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 311 bits (797), Expect = 1.67e-106
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 153
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. NCBI nr
Match: KAF3454638.1 (hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis])

HSP 1 Score: 311 bits (797), Expect = 1.67e-106
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 153
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 163

[Close]

BLAST of IVF0014652 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311 bits (797), Expect = 1.98e-106
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV
Sbjct: 16  MQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 75

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS
Sbjct: 76  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 135

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 153
           DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK
Sbjct: 136 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 168

[Close]

BLAST of IVF0014652 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-79
Identity = 141/153 (92.16%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 1   MQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPV 60
           MQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLIRDGTGFVTFPV
Sbjct: 11  MQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPV 70

Query: 61  KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 120
           KYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ+GD+PNYTTS
Sbjct: 71  KYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTS 130

Query: 121 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIK 154
           DGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIK
Sbjct: 131 DGSVKIQKECEVRLKIIGTRVDATAIFCVGTIK 163

[Close]

BLAST of IVF0014652 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 33  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 92
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 93  PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT 140
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDT 151

[Close]

BLAST of IVF0014652 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-13
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 33  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 92
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 93  PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR 141
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIK 153

The following BLAST results are available for this feature:

BLAST of IVF0014652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	5.6e-83	97.39	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	1.9e-78	92.16	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	4.2e-46	55.63	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	4.2e-46	56.29	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	4.2e-46	55.63	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of IVF0014652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS4	6.4e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A6J1JSG6	1.4e-81	99.35	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	1.4e-81	99.35	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J0ZV58	1.9e-81	98.69	DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=L...	[more]
A0A2I4HHD1	1.9e-81	98.69	DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC1090...	[more]

BLAST of IVF0014652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150740.1	5.81e-107	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011...	[more]
XP_022923594.1	1.67e-106	99.35	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923...	[more]
XP_038906688.1	1.67e-106	99.35	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]
KAF3454638.1	1.67e-106	99.35	hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis]	[more]
KAG7032688.1	1.98e-106	99.35	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of IVF0014652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	1.3e-79	92.16	DNA-directed RNA polymerase II	[more]
AT3G22900.1	1.6e-13	36.45	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14660.1	2.8e-13	36.11	RNA polymerase Rpb7-like, N-terminal domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..70 e-value: 6.8E-25 score: 89.2
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 2..68
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 2..54 e-value: 3.0E-12 score: 46.6
None	No IPR available	GENE3D	2.40.50.140		coord: 71..156 e-value: 1.4E-32 score: 113.6
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..153
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 71..153 e-value: 1.16149E-41 score: 132.385
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 1..71 e-value: 1.32592E-34 score: 114.201
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 68..146 e-value: 1.1E-16 score: 61.0
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..153
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014652.1	IVF0014652.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding