IVF0014618 (gene) Melon (IVF77) v1

Overview


Name	IVF0014618
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	transcription factor MYB46-like
Location	chr04: 23146710 .. 23148632 (-)
RNA-Seq Expression	IVF0014618
Synteny	IVF0014618

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCGTCTTCGTTGGATTAATTATCTTAGACCTGACCTTAAACGCGGAGCTTTCTCTCCTCAGGAAGAAGAGCTTATTGTCCATTTGCATTCCCTTATTGGCAACAGGTCCTCTCTCTCTCTCCTTAACTCATTTTTCTTGATACCGAATTGAGACTTTCAAATGAGTTTTTTTCCTTGGATGAAGAATCATTTCATTCCCTACATTCATGAACCTCTCAAACTTGTTATCATATGTGTTGACCTTAAAAGTCATGGTTTAATATGATATGATTATTTGCTTTATATGTTTTAAACAGGGCAATAGCATGGATCTATGTCATATTACGTAGAACATACATTTCATTTTTAGGAATAATGTTGTAAAGAAGATATTAAAAATCTAGTTGTTTTTTGTAATGTACATCAAAATGAGCATTAACTTGTTATGCTGTAAACAATTCTTTATTCAAATGGAGTTAAGATTAAGCATATGCATATACATTATAAAATGAAAGACATGTTTGAAGGGACATCCCTTATTTTTTATAATGAGTTATATGACATTTGCATTATTTGAATTTGGAGATAAAACGACCTAATCTCCTTTGTAAACAATCAATAGGTGGTCTCAAATCGCATCTCGTTTGCCTGGACGAACCGACAATGAAATAAAGAATTTTTGGAATTCCACATTGAAGAAAAGGTTAAAAACACCTCTCTTCCTCTCCATACAACCATGAATCTTCAGATCCTAGATTGGACATGATGTTTGGAGGAATAATGTCAATGCAAGAACATGACATAATGAGTATGAACATGAGCATGGATTCATCGTCGACCTCCTCATCCTCGTCCCAATTACCGTTTTCTGCAACAGGACACAACTCCTTCGACGGTTCATCTATGCCATTTCTTGACAACCACTTTGAAATGGCCTCTATGGCTGGAAACACCAACGGCTTTCTGCAAGCCCCATTGACAGAAATGGGAATGGGAATGAGAATGGAAGAGAGGTTTAGATATGGAAGTTTGGAGGCTCAAAGATCAATGGAACTTGAGAGAGAAGTGCTATGTTTCCACATGAAAGATGAACCACCCTCCATTAATGAACAATAGAAGCAGTTTGATCAGTATTTGGGTACAAATGAGCAAAATTTGAATGTGGAGGAGATGTTTGGAGATATGGGAAGCCATGGACAATTACAAGAAAGCTTGAAGATGGGTAATGAATGGGACTTGAGAGTTTCATGCAAGATATATCCTCTTCATTTCCTCATTTTCTTTGATTTTTCAACCTTTGCCGCCCTCTAAAATTCTATAAATCTTCATTTATTTTATAATTTTTTTTTGAGGAAAACAAAAAAACCCACACACACACACACACACACACACATATATTCTTTATCCCTCTCATTTTCTCCCTCGTCAAACCCAAAAGAAAAAGCCTATTTTTCCCCACCCCAAGTTTCATATAAAAGGCTTTTCAAAGCCATTTAGGGAATTTTTGGGGAGCCAGCAATACAAATATAAATATATCTTTTTTCCCTTAAATGATTTCTTATTTGTCAATAAAATTATCCCACAAAGAAAGAAAATAAATAAATAAAAGAATTGTTTTTTGGATGGCCATGGTTTGAAGCCCATGAGGGAATGGGAAATGAAAGAGAAATCTTTTGGTTTTGGTATTTGTCTCTTTGGATCAAAAGCAGAGTTTTAGAGAGAAGGGTAGATTTGGAAGATAAAGTAGTGTTTTTACATGCAAAAAAAGAAGCCTTTTGTTCTACAAATATCCCAACTTGAGAGAGATTTTGGTAAGTTTGTGTATCTTCAAGACATGGTCTTTTGTTAGCAGTTAGCACCATCAAATTTAATAATAGTAGAAGCAGCAAATAAACAATGGTTGGATCATTTGTTGTTCTTTTTTAATCATTTATATGTGTAC

mRNA sequence

TGTCGTCTTCGTTGGATTAATTATCTTAGACCTGACCTTAAACGCGGAGCTTTCTCTCCTCAGGAAGAAGAGCTTATTGTCCATTTGCATTCCCTTATTGGCAACAGGTGGTCTCAAATCGCATCTCGTTTGCCTGGACGAACCGACAATGAAATAAAGAATTTTTGGAATTCCACATTGAAGAAAAGGTTAAAAACACCTCTCTTCCTCTCCATACAACCATGAATCTTCAGATCCTAGATTGGACATGATGTTTGGAGGAATAATGTCAATGCAAGAACATGACATAATGAGTATGAACATGAGCATGGATTCATCGTCGACCTCCTCATCCTCGTCCCAATTACCGTTTTCTGCAACAGGACACAACTCCTTCGACGGTTCATCTATGCCATTTCTTGACAACCACTTTGAAATGGCCTCTATGGCTGGAAACACCAACGGCTTTCTGCAAGCCCCATTGACAGAAATGGGAATGGGAATGAGAATGGAAGAGAGGTTTAGATATGGAAGTTTGGAGGCTCAAAGATCAATGGAACTTGAGAGAGAAGTGCTATGTTTCCACATGAAAGATGAACCACCCTCCATTAATGAACAATAGAAGCAGTTTGATCAGTATTTGGGTACAAATGAGCAAAATTTGAATGTGGAGGAGATGTTTGGAGATATGGGAAGCCATGGACAATTACAAGAAAGCTTGAAGATGGGTAATGAATGGGACTTGAGAGTTTCATGCAAGATATATCCTCTTCATTTCCTCATTTTCTTTGATTTTTCAACCTTTGCCGCCCTCTAAAATTCTATAAATCTTCATTTATTTTATAATTTTTTTTTGAGGAAAACAAAAAAACCCACACACACACACACACACACACACATATATTCTTTATCCCTCTCATTTTCTCCCTCGTCAAACCCAAAAGAAAAAGCCTATTTTTCCCCACCCCAAGTTTCATATAAAAGGCTTTTCAAAGCCATTTAGGGAATTTTTGGGGAGCCAGCAATACAAATATAAATATATCTTTTTTCCCTTAAATGATTTCTTATTTGTCAATAAAATTATCCCACAAAGAAAGAAAATAAATAAATAAAAGAATTGTTTTTTGGATGGCCATGGTTTGAAGCCCATGAGGGAATGGGAAATGAAAGAGAAATCTTTTGGTTTTGGTATTTGTCTCTTTGGATCAAAAGCAGAGTTTTAGAGAGAAGGGTAGATTTGGAAGATAAAGTAGTGTTTTTACATGCAAAAAAAGAAGCCTTTTGTTCTACAAATATCCCAACTTGAGAGAGATTTTGGTAAGTTTGTGTATCTTCAAGACATGGTCTTTTGTTAGCAGTTAGCACCATCAAATTTAATAATAGTAGAAGCAGCAAATAAACAATGGTTGGATCATTTGTTGTTCTTTTTTAATCATTTATATGTGTAC

Coding sequence (CDS)

ATGATGTTTGGAGGAATAATGTCAATGCAAGAACATGACATAATGAGTATGAACATGAGCATGGATTCATCGTCGACCTCCTCATCCTCGTCCCAATTACCGTTTTCTGCAACAGGACACAACTCCTTCGACGGTTCATCTATGCCATTTCTTGACAACCACTTTGAAATGGCCTCTATGGCTGGAAACACCAACGGCTTTCTGCAAGCCCCATTGACAGAAATGGGAATGGGAATGAGAATGGAAGAGAGGTTTAGATATGGAAGTTTGGAGGCTCAAAGATCAATGGAACTTGAGAGAGAAGTGCTATGTTTCCACATGAAAGATGAACCACCCTCCATTAATGAACAATAG

Protein sequence

MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASMAGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCFHMKDEPPSINEQ

Homology

[Close]

BLAST of IVF0014618 vs. ExPASy TrEMBL
Match: A0A5D3BPM7 (Transcription factor MYB46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00120 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM
Sbjct: 142 MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 201

Query: 61  AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCFHMKD--EPPSINEQ 118
           AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLC   ++   PP +N +
Sbjct: 202 AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCVPHEEMNHPPLMNNR 260

[Close]

BLAST of IVF0014618 vs. ExPASy TrEMBL
Match: A0A1S3CFJ0 (transcription factor MYB46-like OS=Cucumis melo OX=3656 GN=LOC103500311 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 107/119 (89.92%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM
Sbjct: 142 MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 201

Query: 61  AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCFHMKD--EPPSINEQ 118
           AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLC   ++   PP +N +
Sbjct: 202 AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCVPHEEMNHPPLMNNR 260

[Close]

BLAST of IVF0014618 vs. ExPASy TrEMBL
Match: A0A0A0L9U4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G696880 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.5e-46
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM
Sbjct: 1   MMFGGIMAMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60

Query: 61  AGNTNGFLQAPLTEMGMGMR-MEERFRYGSLEAQRSMELEREVLCFHMKD--EPPSINEQ 118
           AGNTNGFLQAPLTEMGMGMR MEERFRYGSLEAQRSMELEREVLC   ++   PP +N +
Sbjct: 61  AGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEMNHPPLMNNR 120

[Close]

BLAST of IVF0014618 vs. ExPASy TrEMBL
Match: A0A6J1KCL7 (transcription factor MYB46-like OS=Cucurbita maxima OX=3661 GN=LOC111493095 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 93/107 (86.92%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNS DGSSMPFLDN+FEMASM
Sbjct: 143 MMFGGIMAMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSLDGSSMPFLDNNFEMASM 202

Query: 61  AGNTNGFLQAP---LTEMGMGMRMEERFRYGSLEAQRSMELEREVLC 105
            G TNGFLQAP    TEMGM M ME+R  YGSLEAQRSMELEREVLC
Sbjct: 203 VGATNGFLQAPGGCATEMGMRMIMEQRLSYGSLEAQRSMELEREVLC 249

[Close]

BLAST of IVF0014618 vs. ExPASy TrEMBL
Match: A0A6J1GC35 (transcription factor MYB46-like OS=Cucurbita moschata OX=3662 GN=LOC111452781 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.6e-37
Identity = 91/107 (85.05%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEH+IMSMN+SMDSSSTSSSSSQLPFSATGHNS DGSSMPFLDN+FEMASM
Sbjct: 143 MMFGGIMAMQEHEIMSMNLSMDSSSTSSSSSQLPFSATGHNSLDGSSMPFLDNNFEMASM 202

Query: 61  AGNTNGFLQAP---LTEMGMGMRMEERFRYGSLEAQRSMELEREVLC 105
            G TNGFLQAP    TEMGM M MEER  YGSLEAQRSME+EREVLC
Sbjct: 203 VGATNGFLQAPGGCATEMGMRMIMEERLSYGSLEAQRSMEVEREVLC 249

[Close]

BLAST of IVF0014618 vs. NCBI nr
Match: XP_008461794.1 (PREDICTED: transcription factor MYB46-like [Cucumis melo] >KAA0048349.1 transcription factor MYB46-like [Cucumis melo var. makuwa] >TYK01115.1 transcription factor MYB46-like [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 1.74e-61
Identity = 107/117 (91.45%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM
Sbjct: 142 MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 201

Query: 61  AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCFHMKD--EPPSIN 115
           AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLC   ++   PP +N
Sbjct: 202 AGNTNGFLQAPLTEMGMGMRMEERFRYGSLEAQRSMELEREVLCVPHEEMNHPPLMN 258

[Close]

BLAST of IVF0014618 vs. NCBI nr
Match: XP_004149614.1 (transcription factor MYB46 [Cucumis sativus] >XP_031737713.1 transcription factor MYB46 [Cucumis sativus] >KAE8650933.1 hypothetical protein Csa_001273 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 3.19e-59
Identity = 106/118 (89.83%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM
Sbjct: 142 MMFGGIMAMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 201

Query: 61  AGNTNGFLQAPLTEMGMGMR-MEERFRYGSLEAQRSMELEREVLCFHMKD--EPPSIN 115
           AGNTNGFLQAPLTEMGMGMR MEERFRYGSLEAQRSMELEREVLC   ++   PP +N
Sbjct: 202 AGNTNGFLQAPLTEMGMGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEMNHPPLMN 259

[Close]

BLAST of IVF0014618 vs. NCBI nr
Match: XP_038905632.1 (transcription factor MYB46-like [Benincasa hispida])

HSP 1 Score: 174 bits (442), Expect = 2.44e-51
Identity = 97/121 (80.17%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDN+FEMAS+
Sbjct: 142 MMFGGIMAMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNNFEMASV 201

Query: 61  AGNTNGFLQAPLTEMGMGM----RMEERFRYGSLEAQRSMELEREVLCFHMKD--EPPSI 115
           AG  NGFLQ  LTEMGMGM    RMEERF YG+LE QRSMELEREVLC   ++   PP +
Sbjct: 202 AGANNGFLQPSLTEMGMGMGMGMRMEERFSYGNLEGQRSMELEREVLCLPHEEMMNPPLM 261

[Close]

BLAST of IVF0014618 vs. NCBI nr
Match: KAG7036583.1 (hypothetical protein SDJN02_00202, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168 bits (425), Expect = 2.57e-50
Identity = 92/107 (85.98%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEHDIMSMN+SMDSSSTSSSSSQLPFSATGHNS DGSSMPFLDN+FEMASM
Sbjct: 25  MMFGGIMAMQEHDIMSMNLSMDSSSTSSSSSQLPFSATGHNSLDGSSMPFLDNNFEMASM 84

Query: 61  AGNTNGFLQAP---LTEMGMGMRMEERFRYGSLEAQRSMELEREVLC 104
            G TNGFLQAP    TEMGM M MEER  YGSLEAQRSME+EREVLC
Sbjct: 85  VGATNGFLQAPGGCATEMGMRMIMEERLSYGSLEAQRSMEVEREVLC 131

[Close]

BLAST of IVF0014618 vs. NCBI nr
Match: XP_023525825.1 (transcription factor MYB46-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 4.60e-50
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MMFGGIMSMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSMPFLDNHFEMASM 60
           MMFGGIM+MQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSS+PFLDN+FEMASM
Sbjct: 143 MMFGGIMAMQEHDIMSMNMSMDSSSTSSSSSQLPFSATGHNSFDGSSIPFLDNNFEMASM 202

Query: 61  AGNTNGFLQAP---LTEMGMGMRMEERFRYGSLEAQRSMELEREVLC 104
            G TNGFLQAP    TEMGM M MEER  YGSLEAQRSMELEREVLC
Sbjct: 203 VGATNGFLQAPGGCATEMGMRMIMEERLSYGSLEAQRSMELEREVLC 249

The following BLAST results are available for this feature:

BLAST of IVF0014618 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014618 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPM7	1.0e-47	89.92	Transcription factor MYB46-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CFJ0	1.0e-47	89.92	transcription factor MYB46-like OS=Cucumis melo OX=3656 GN=LOC103500311 PE=4 SV=...	[more]
A0A0A0L9U4	5.5e-46	88.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G696880 PE=4 SV=1	[more]
A0A6J1KCL7	2.5e-38	86.92	transcription factor MYB46-like OS=Cucurbita maxima OX=3661 GN=LOC111493095 PE=4...	[more]
A0A6J1GC35	1.6e-37	85.05	transcription factor MYB46-like OS=Cucurbita moschata OX=3662 GN=LOC111452781 PE...	[more]

BLAST of IVF0014618 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461794.1	1.74e-61	91.45	PREDICTED: transcription factor MYB46-like [Cucumis melo] >KAA0048349.1 transcri...	[more]
XP_004149614.1	3.19e-59	89.83	transcription factor MYB46 [Cucumis sativus] >XP_031737713.1 transcription facto...	[more]
XP_038905632.1	2.44e-51	80.17	transcription factor MYB46-like [Benincasa hispida]	[more]
KAG7036583.1	2.57e-50	85.98	hypothetical protein SDJN02_00202, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023525825.1	4.60e-50	87.85	transcription factor MYB46-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0014618 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014618.1	IVF0014618.1	mRNA