IVF0014599 (gene) Melon (IVF77) v1

Overview


Name	IVF0014599
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr08: 14668376 .. 14668579 (-)
RNA-Seq Expression	IVF0014599
Synteny	IVF0014599

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCGACGATTTGGATGAGGGTGATTCAACGTACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGTTTCAAACGAATGGAGTGAATTGAGAGATCAATTGGCTTATACGATGTTCAGTGATTGGGAGTTACGTGACCAGTAG

mRNA sequence

ATGGCGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCGACGATTTGGATGAGGGTGATTCAACGTACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGTTTCAAACGAATGGAGTGAATTGAGAGATCAATTGGCTTATACGATGTTCAGTGATTGGGAGTTACGTGACCAGTAG

Coding sequence (CDS)

ATGGCGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCGACGATTTGGATGAGGGTGATTCAACGTACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGTTTCAAACGAATGGAGTGAATTGAGAGATCAATTGGCTTATACGATGTTCAGTGATTGGGAGTTACGTGACCAGTAG

Protein sequence

MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFSDWELRDQ

Homology

[Close]

BLAST of IVF0014599 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0014599 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0014599 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0014599 vs. ExPASy TrEMBL
Match: A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0014599 vs. ExPASy TrEMBL
Match: A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-28
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 68
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0014599 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 5.59e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0014599 vs. NCBI nr
Match: TYK19779.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 1.04e-37
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 165 DWELRDQ 171

[Close]

BLAST of IVF0014599 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 2.17e-37
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0014599 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 2.17e-37
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIE SNEWSELRDQLA+TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  DWELRDQ 67
           DWELRDQ
Sbjct: 242 DWELRDQ 248

[Close]

BLAST of IVF0014599 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 9.36e-36
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 60
           MACCLLHNLINREMTNSEIIDDLDE DSTYATTGGDEINYIE SNEWSE RDQLA+TMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  DWELRDQ 67
           DWEL DQ
Sbjct: 240 DWELCDQ 246

The following BLAST results are available for this feature:

BLAST of IVF0014599 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJS2	1.1e-30	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	1.1e-30	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CDG6	1.3e-28	94.03	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0J9	1.3e-28	94.03	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3B4J8	1.3e-28	94.03	uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=...	[more]

BLAST of IVF0014599 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043564.1	5.59e-39	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK19779.1	1.04e-37	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008441953.1	2.17e-37	94.03	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]
TYK08389.1	2.17e-37	94.03	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0063753.1	9.36e-36	92.54	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas...	[more]

BLAST of IVF0014599 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014599.1	IVF0014599.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding