IVF0014565 (gene) Melon (IVF77) v1

Overview


Name	IVF0014565
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr08: 11776119 .. 11776580 (-)
RNA-Seq Expression	IVF0014565
Synteny	IVF0014565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATGTATCTATTGTACCTGCTCCAATTCAAAGGAGACGTGCTCTAGTGCAAGAGCCTGATGAATTGGAAAAAGTTGACCAACATGTGGAAGAAGTGGCTCTCGTCACACAAACACAGAGTGACACTGGTTACGTTAGTCTAGTGATGATGATGTCGGTGTTTCGAACGGGATATTATGATTCAGGAGTCGATCAATCGTCAGACTTCAAAACACAATACATGCATGGTCACGGGCACGATCGTGGAGAACATAACGAATATTTATACTACGAAGCGCTTGCAGCGGTACTTGAGGAACCAGATGAGCAACAACAACAAGAGAACTGGAGGAACTACAACAACAAGAGAATCTGGAGGAACTACAACAACAAAGAGTGCAAAGTCGATGGCTACAACCAGCTAGAAATCGTCAAAGTCCAAGTTGTGGAACACATTGATTTTTTTTTCATTAAATGA

mRNA sequence

ATGTACGATGTATCTATTGTACCTGCTCCAATTCAAAGGAGACGTGCTCTAGTGCAAGAGCCTGATGAATTGGAAAAAGTTGACCAACATGTGGAAGAAGTGGCTCTCGTCACACAAACACAGAGTGACACTGGTTACGTTAGTCTAGTGATGATGATGTCGGTGTTTCGAACGGGATATTATGATTCAGGAGTCGATCAATCGTCAGACTTCAAAACACAATACATGCATGGTCACGGGCACGATCGTGGAGAACATAACGAATATTTATACTACGAAGCGCTTGCAGCGGTACTTGAGGAACCAGATGAGCAACAACAACAAGAGAACTGGAGGAACTACAACAACAAGAGAATCTGGAGGAACTACAACAACAAAGAGTGCAAAGTCGATGGCTACAACCAGCTAGAAATCGTCAAAGTCCAAGTTGTGGAACACATTGATTTTTTTTTCATTAAATGA

Coding sequence (CDS)

ATGTACGATGTATCTATTGTACCTGCTCCAATTCAAAGGAGACGTGCTCTAGTGCAAGAGCCTGATGAATTGGAAAAAGTTGACCAACATGTGGAAGAAGTGGCTCTCGTCACACAAACACAGAGTGACACTGGTTACGTTAGTCTAGTGATGATGATGTCGGTGTTTCGAACGGGATATTATGATTCAGGAGTCGATCAATCGTCAGACTTCAAAACACAATACATGCATGGTCACGGGCACGATCGTGGAGAACATAACGAATATTTATACTACGAAGCGCTTGCAGCGGTACTTGAGGAACCAGATGAGCAACAACAACAAGAGAACTGGAGGAACTACAACAACAAGAGAATCTGGAGGAACTACAACAACAAAGAGTGCAAAGTCGATGGCTACAACCAGCTAGAAATCGTCAAAGTCCAAGTTGTGGAACACATTGATTTTTTTTTCATTAAATGA

Protein sequence

MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGYYDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIWRNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK

Homology

[Close]

BLAST of IVF0014565 vs. ExPASy TrEMBL
Match: A0A5A7SI16 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00500 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.4e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60
           MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY
Sbjct: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60

Query: 61  YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIW 120
           YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIW
Sbjct: 61  YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIW 120

Query: 121 RNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK 154
           RNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK
Sbjct: 121 RNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK 153

[Close]

BLAST of IVF0014565 vs. ExPASy TrEMBL
Match: A0A5D3CH08 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00570 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.2e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60
          MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY
Sbjct: 1  MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60

Query: 61 YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAA 98
          YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAA
Sbjct: 61 YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAA 97

[Close]

BLAST of IVF0014565 vs. ExPASy TrEMBL
Match: A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.9e-38
Identity = 103/182 (56.59%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALV--TQTQSDTGYVSLVMMMSVFRT 60
           MYDVSIVPAP+QR+R LVQE D+LE+VDQHVEEV  V  TQTQS+  YVS +MMM  F T
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403

Query: 61  GYYDSGVDQSSDF---------------------------KTQYMHGHGHDRGEHNEYLY 120
            YYD GV QSSDF                            + YMHGHG  RGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463

Query: 121 YEALAAVLEEPDEQQQQENWRNYNNKRIWRNYNNKECKVDGYNQLEIVKVQVVEHIDFFF 154
           YE    V ++ DEQQQQE         I R YNNKE +VD  NQLEIV VQVVEHIDFFF
Sbjct: 464 YEVPTTVPKQSDEQQQQE---------IRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFF 516

[Close]

BLAST of IVF0014565 vs. ExPASy TrEMBL
Match: A0A5D3CHF6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001150 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.9e-38
Identity = 103/182 (56.59%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALV--TQTQSDTGYVSLVMMMSVFRT 60
           MYDVSIVPAP+QR+R LVQE D+LE+VDQHVEEV  V  TQTQS+  YVS +MMM  F T
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206

Query: 61  GYYDSGVDQSSDF---------------------------KTQYMHGHGHDRGEHNEYLY 120
            YYD GV QSSDF                            + YMHGHG  RGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEALAAVLEEPDEQQQQENWRNYNNKRIWRNYNNKECKVDGYNQLEIVKVQVVEHIDFFF 154
           YE    V ++ DEQQQQE         I R YNNKE +VD  NQLEIV VQVVEHIDFFF
Sbjct: 267 YEVPTTVPKQSDEQQQQE---------IRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFF 319

[Close]

BLAST of IVF0014565 vs. ExPASy TrEMBL
Match: A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.4e-33
Identity = 87/145 (60.00%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60
           MYDV IVPAPIQRRRALVQE DELE+VDQH+EEV  VTQT+S+T YVS ++MMS F TGY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDSGVDQSSDFKT--------------------------QYMHGHGHDRGEHNEYLYYEA 120
           YD GV QSSDF T                           YMHGHG  RGEHNEYLYY A
Sbjct: 337 YDPGVSQSSDFGTGYYNLTGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHNEYLYYVA 396

[Close]

BLAST of IVF0014565 vs. NCBI nr
Match: KAA0025800.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 308 bits (788), Expect = 1.44e-105
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60
           MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY
Sbjct: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60

Query: 61  YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIW 120
           YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIW
Sbjct: 61  YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAAVLEEPDEQQQQENWRNYNNKRIW 120

Query: 121 RNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK 153
           RNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK
Sbjct: 121 RNYNNKECKVDGYNQLEIVKVQVVEHIDFFFIK 153

[Close]

BLAST of IVF0014565 vs. NCBI nr
Match: TYK09656.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (498), Expect = 1.45e-60
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60
          MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY
Sbjct: 1  MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60

Query: 61 YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAA 97
          YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAA
Sbjct: 61 YDSGVDQSSDFKTQYMHGHGHDRGEHNEYLYYEALAA 97

[Close]

BLAST of IVF0014565 vs. NCBI nr
Match: TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 8.77e-49
Identity = 103/180 (57.22%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQ--SDTGYVSLVMMMSVFRT 60
           MYDVSIVPAP+QR+R LVQE D+LE+VDQHVEEV  VTQTQ  S+  YVS +MMM  F T
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206

Query: 61  GYYDSGVDQSSDF---------------------------KTQYMHGHGHDRGEHNEYLY 120
            YYD GV QSSDF                            + YMHGHG  RGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEALAAVLEEPDEQQQQENWRNYNNKRIWRNYNNKECKVDGYNQLEIVKVQVVEHIDFFF 151
           YE    V ++ DEQQQQE         I R YNNKE +VD  NQLEIV VQVVEHIDFFF
Sbjct: 267 YEVPTTVPKQSDEQQQQE---------IRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFF 317

[Close]

BLAST of IVF0014565 vs. NCBI nr
Match: KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 5.82e-47
Identity = 103/180 (57.22%), Postives = 113/180 (62.78%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQ--SDTGYVSLVMMMSVFRT 60
           MYDVSIVPAP+QR+R LVQE D+LE+VDQHVEEV  VTQTQ  S+  YVS +MMM  F T
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403

Query: 61  GYYDSGVDQSSDF---------------------------KTQYMHGHGHDRGEHNEYLY 120
            YYD GV QSSDF                            + YMHGHG  RGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463

Query: 121 YEALAAVLEEPDEQQQQENWRNYNNKRIWRNYNNKECKVDGYNQLEIVKVQVVEHIDFFF 151
           YE    V ++ DEQQQQE         I R YNNKE +VD  NQLEIV VQVVEHIDFFF
Sbjct: 464 YEVPTTVPKQSDEQQQQE---------IRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFF 514

[Close]

BLAST of IVF0014565 vs. NCBI nr
Match: KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (387), Expect = 1.91e-41
Identity = 87/145 (60.00%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 1   MYDVSIVPAPIQRRRALVQEPDELEKVDQHVEEVALVTQTQSDTGYVSLVMMMSVFRTGY 60
           MYDV IVPAPIQRRRALVQE DELE+VDQH+EEV  VTQT+S+T YVS ++MMS F TGY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDSGVDQSSDFKT--------------------------QYMHGHGHDRGEHNEYLYYEA 119
           YD GV QSSDF T                           YMHGHG  RGEHNEYLYY A
Sbjct: 337 YDPGVSQSSDFGTGYYNLTGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHNEYLYYVA 396

The following BLAST results are available for this feature:

BLAST of IVF0014565 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SI16	3.4e-80	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CH08	7.2e-46	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7T6Q6	1.9e-38	56.59	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CHF6	1.9e-38	56.59	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7U731	2.4e-33	60.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of IVF0014565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025800.1	1.44e-105	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK09656.1	1.45e-60	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK09816.1	8.77e-49	57.22	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0037866.1	5.82e-47	57.22	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0051098.1	1.91e-41	60.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of IVF0014565 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014565.1	IVF0014565.1	mRNA