IVF0014413 (gene) Melon (IVF77) v1

Overview


Name	IVF0014413
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr05: 12808962 .. 12809240 (-)
RNA-Seq Expression	IVF0014413
Synteny	IVF0014413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTCGCAAGATATGATATTGAGAAGTTCAATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATTGTTGGCCAACAAAAGGCATTGAAAGCTCTCACGAATCCATAAAAGCTACCTAAAACAATGACTCAAGAAGAAAAAGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTTTATTAG

mRNA sequence

ATGGCAGTCGCAAGATATGATATTGAGAAGTTCAATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATTCTACCTAAAACAATGACTCAAGAAGAAAAAGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTTTATTAG

Coding sequence (CDS)

ATGGCAGTCGCAAGATATGATATTGAGAAGTTCAATGGTAAGGGAGATTTTACCTTATGGAAAGCAAAGATCAAAGCCATTCTACCTAAAACAATGACTCAAGAAGAAAAAGAAACTATGGAAAATGCAGCCTATGGTGCCATAGTTTTAAACCTAAGTGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAACTTATGGAATGTGGAAGAAATTGGAAGAACTTTATTAG

Protein sequence

MAVARYDIEKFNGKGDFTLWKAKIKAILPKTMTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY

Homology

[Close]

BLAST of IVF0014413 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-09
Identity = 30/92 (32.61%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 1  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAY 60
          M+  +Y++ KFNG   F+ W+ +++ +L               P TM  E+   ++  A 
Sbjct: 1  MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60

Query: 61 GAIVLNLSDNVLREVIGEETTYGMWKKLEELY 78
           AI L+LSD+V+  +I E+T  G+W +LE LY
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLY 92

[Close]

BLAST of IVF0014413 vs. ExPASy TrEMBL
Match: A0A5D3BQH4 (Transcription initiation factor TFIID subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00230 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.4e-28
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAY 60
          MAV RYDIEKF+GKG FTLWKAK+KAI               LPK MTQEEKETMENAAY
Sbjct: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60

Query: 61 GAIVLNLSDNVLREVIGEETTYGMWKKLEELY 78
          GAIVLNLSDNVLREVIG+ET YGMW+KLEELY
Sbjct: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92

[Close]

BLAST of IVF0014413 vs. ExPASy TrEMBL
Match: A0A1S4DV47 (uncharacterized protein LOC107990692 OS=Cucumis melo OX=3656 GN=LOC107990692 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAY 60
           +AVARYDIEKF+GKGDFTLWKAKIKAI               LPK M QE+ ETMENAAY
Sbjct: 45  IAVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETMENAAY 104

Query: 61  GAIVLNLSDNVLREVI 62
            AIVLNLSD+VLRE+I
Sbjct: 105 SAIVLNLSDSVLRELI 120

[Close]

BLAST of IVF0014413 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.6e-16
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 32 MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY 78
          MTQEEKETMEN AYGAIVLNLSDNVL+EVIGEETTYGMWKKLEELY
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELY 46

[Close]

BLAST of IVF0014413 vs. ExPASy TrEMBL
Match: A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAY 60
          M   +++IEKF+G GDFTLW  +I AI               LP T+T+ E+ET+E  AY
Sbjct: 1  MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60

Query: 61 GAIVLNLSDNVLREVIGEETTYGMWKKLEELY 78
            +++N++DNVLR+VI E T +  W+KL+ LY
Sbjct: 61 STLIMNITDNVLRQVIEETTAFATWEKLKSLY 92

[Close]

BLAST of IVF0014413 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 32 MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY 78
          MT EEKETMENA YGAIVLNLSDNVLREVI E+TTYGMWKKLEELY
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELY 46

[Close]

BLAST of IVF0014413 vs. NCBI nr
Match: KAA0025506.1 (transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa] >TYK00359.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (329), Expect = 8.78e-38
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAY 60
          MAV RYDIEKF+GKG FTLWKAK+KAI               LPK MTQEEKETMENAAY
Sbjct: 1  MAVERYDIEKFDGKGYFTLWKAKMKAIVGQRKKLKAIIDPEKLPKKMTQEEKETMENAAY 60

Query: 61 GAIVLNLSDNVLREVIGEETTYGMWKKLEELY 77
          GAIVLNLSDNVLREVIG+ET YGMW+KLEELY
Sbjct: 61 GAIVLNLSDNVLREVIGKETAYGMWQKLEELY 92

[Close]

BLAST of IVF0014413 vs. NCBI nr
Match: XP_016899859.1 (PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 3.57e-23
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1   MAVARYDIEKFNGKGDFTLWKAKIKAI---------------LPKTMTQEEKETMENAAY 60
           +AVARYDIEKF+GKGDFTLWKAKIKAI               LPK M QE+ ETMENAAY
Sbjct: 45  IAVARYDIEKFDGKGDFTLWKAKIKAIVGQQKALKALTDPEKLPKIMIQEDNETMENAAY 104

[Close]

BLAST of IVF0014413 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.80e-22
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 32 MTQEEKETMENAAYGAIVLNLSDNVLREVIGEETTYGMWKKLEELY 77
          MTQEEKETMEN AYGAIVLNLSDNVL+EVIGEETTYGMWKKLEELY
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELY 46

[Close]

BLAST of IVF0014413 vs. NCBI nr
Match: XP_038889933.1 (uncharacterized protein LOC120079695 [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 2.98e-21
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAY 60
          M   R++IEKF+GK DF LWKAKIKA+L               PKT T  EKE +E  AY
Sbjct: 1  MTTTRFEIEKFDGKTDFELWKAKIKAVLGQQKALLAITDLTKYPKTFTDVEKEIIEVNAY 60

Query: 61 GAIVLNLSDNVLREVIGEETTYGMWKKLEELY 77
          G IVLN++DNVLR+++  +T + +W KL E+Y
Sbjct: 61 GTIVLNVTDNVLRQIVDRQTAFDLWNKLNEIY 92

[Close]

BLAST of IVF0014413 vs. NCBI nr
Match: XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])

HSP 1 Score: 91.7 bits (226), Expect = 9.11e-21
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1  MAVARYDIEKFNGKGDFTLWKAKIKAIL---------------PKTMTQEEKETMENAAY 60
          MA  RY+IEKF+ K DF LWK KIK +L               P+T+T+ EKET+E  A 
Sbjct: 1  MATTRYEIEKFDSKTDFELWKVKIKVVLGQQKALLAITDPAKYPETLTEAEKETIEVNAC 60

Query: 61 GAIVLNLSDNVLREVIGEETTYGMWKKLEELY 77
          G IVLN++DNVLR+VI + T Y +W KL E+Y
Sbjct: 61 GTIVLNVTDNVLRQVINQPTAYALWNKLNEIY 92

The following BLAST results are available for this feature:

BLAST of IVF0014413 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.4e-09	32.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of IVF0014413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQH4	3.4e-28	75.00	Transcription initiation factor TFIID subunit 2-like OS=Cucumis melo var. makuwa...	[more]
A0A1S4DV47	2.1e-17	68.42	uncharacterized protein LOC107990692 OS=Cucumis melo OX=3656 GN=LOC107990692 PE=...	[more]
A0A5D3BAU2	6.6e-16	95.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U6R2	1.3e-14	43.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V6Z9	1.6e-14	91.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0014413 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025506.1	8.78e-38	75.00	transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa] ...	[more]
XP_016899859.1	3.57e-23	68.42	PREDICTED: uncharacterized protein LOC107990692 [Cucumis melo]	[more]
TYJ96960.1	1.80e-22	95.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038889933.1	2.98e-21	48.91	uncharacterized protein LOC120079695 [Benincasa hispida]	[more]
XP_038890043.1	9.11e-21	50.00	uncharacterized protein LOC120079747 [Benincasa hispida]	[more]

BLAST of IVF0014413 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 39..77 e-value: 1.1E-6 score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014413.1	IVF0014413.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity