IVF0014252 (gene) Melon (IVF77) v1

Overview


Name	IVF0014252
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	calcium-binding protein-like
Location	chr03: 26045087 .. 26045916 (-)
RNA-Seq Expression	IVF0014252
Synteny	IVF0014252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTAATAGATATCATCTCAAAGAGAGAGAGAGAGAGAGAAAACACCATCTCCTTATCTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCACATAGAAAAAACTCTAAGGCTAACAAGCTATTATCATCAACAAAAGAGCTTACATTCTCAAATATCATTGAAATGGCAATGTCAAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGAGAGATCTTAGAAGAGCATGATGTGGACGGTGATGGTAACCTGACGAAGCAAGAAGTGATGCAAGCCCTGAACTCCATGGGTGCTTTGATGTCGTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAACTCGAGAAGATGAGCTGGAAAAACTTGTTGACTATGTCATGAGGTTTCAGACCCCAAGGACCCCAAAGGTCCCTAAGGTGCCAGCCCAGAAGCCTTGCCATGATGGTAAATCGATTGTGTAATAATCTTAGTTTATTTCTATTTATTATGTGTTCGTCGTGGTCGTCCTGTTTTCCAGTCCATATAGTTTACGCTACAAATTGAGCTATGGCTGTATGCTCAAATTGGCAACTATCCACATATGTTTGTTATCTGCAGTATTATGTGTCATCCATAATAAAAATGTCTTCTTGTTGTATCCATCGATTATTATATAATAAACATTCCTAAACCAATGTTAAAAATGTCAAATTTTGTTTCATTCTATGCAAATGTGTGAATTGTATATAGTTTAACTTTACACTATATAAATATATAAACTATTAAATAAGATCTAACATAAAGT

mRNA sequence

TGTGTAATAGATATCATCTCAAAGAGAGAGAGAGAGAGAGAAAACACCATCTCCTTATCTTAGGGTTTTTGTCTTTTACATACCAACTCTATATAAAGACTCCTTCCACATAGAAAAAACTCTAAGGCTAACAAGCTATTATCATCAACAAAAGAGCTTACATTCTCAAATATCATTGAAATGGCAATGTCAAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGAGAGATCTTAGAAGAGCATGATGTGGACGGTGATGGTAACCTGACGAAGCAAGAAGTGATGCAAGCCCTGAACTCCATGGGTGCTTTGATGTCGTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAACTCGAGAAGATGAGCTGGAAAAACTTGTTGACTATGTCATGAGGTTTCAGACCCCAAGGACCCCAAAGGTCCCTAAGGTGCCAGCCCAGAAGCCTTGCCATGATGGTAAATCGATTGTGTAATAATCTTAGTTTATTTCTATTTATTATGTGTTCGTCGTGGTCGTCCTGTTTTCCAGTCCATATAGTTTACGCTACAAATTGAGCTATGGCTGTATGCTCAAATTGGCAACTATCCACATATGTTTGTTATCTGCAGTATTATGTGTCATCCATAATAAAAATGTCTTCTTGTTGTATCCATCGATTATTATATAATAAACATTCCTAAACCAATGTTAAAAATGTCAAATTTTGTTTCATTCTATGCAAATGTGTGAATTGTATATAGTTTAACTTTACACTATATAAATATATAAACTATTAAATAAGATCTAACATAAAGT

Coding sequence (CDS)

ATGGCAATGTCAAGGTCTCAATTGAAGTTGACTAGGGACGAGGTTAGAGAGATCTTAGAAGAGCATGATGTGGACGGTGATGGTAACCTGACGAAGCAAGAAGTGATGCAAGCCCTGAACTCCATGGGTGCTTTGATGTCGTTTCAGAAAGCTCACTATGGTGTTTCTCATGCTGACAAAGATGGGGATGGTAAAGTCGATCTAACTCGAGAAGATGAGCTGGAAAAACTTGTTGACTATGTCATGAGGTTTCAGACCCCAAGGACCCCAAAGGTCCCTAAGGTGCCAGCCCAGAAGCCTTGCCATGATGGTAAATCGATTGTGTAA

Protein sequence

MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADKDGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV

Homology

[Close]

BLAST of IVF0014252 vs. ExPASy Swiss-Prot
Match: Q0DZP5 (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica OX=39947 GN=CML17 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.5e-04
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 14 EVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADKDGDGKVDLTREDE 73
          E+R + E  D DGDG +T++E+ ++L  +G  +  ++    ++  D +GDG VD+   DE
Sbjct: 8  ELRRVFELFDRDGDGRITREELTESLERLGMPVHREELAATIARIDANGDGCVDM---DE 67

Query: 74 LEKLVDYVMR 84
            +L + VMR
Sbjct: 68 FTQLYETVMR 74

[Close]

BLAST of IVF0014252 vs. ExPASy TrEMBL
Match: A0A5A7V4S6 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00280 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.5e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV 109
           DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV 108

[Close]

BLAST of IVF0014252 vs. ExPASy TrEMBL
Match: A0A0A0LNG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.6e-46
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDG+LTKQEVMQALNSMG++MSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLTREDELEKLVDYVMRFQTPR---TPKVPKVPAQKPCHDGKSIV 109
           DGDGKVDL  E E+E L+DYVMRFQTPR   TPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDL-GEAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110

[Close]

BLAST of IVF0014252 vs. ExPASy TrEMBL
Match: A0A0A0LRC3 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.3e-29
Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
          MA SRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG +MSFQKAHYGV+ ADK
Sbjct: 1  MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61 DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPK 95
          DGDG VDL    E++ LVDYVMRFQ  +   VPK
Sbjct: 61 DGDGAVDL-EGGEIDSLVDYVMRFQASK--DVPK 91

[Close]

BLAST of IVF0014252 vs. ExPASy TrEMBL
Match: A0A0A0LP50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGKVDLTREDELEKLVDYVMRFQT 87
          +D DGKVD   +DELEKL+D V+RFQT
Sbjct: 61 RDDDGKVD---QDELEKLIDCVIRFQT 84

[Close]

BLAST of IVF0014252 vs. ExPASy TrEMBL
Match: A0A5A7UYC0 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00250 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 41/88 (46.59%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
          M+ + S+L+L+R++++EI  EHD+DGDG L+  E+++A    G+++ F KAHYG++HAD+
Sbjct: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGKVDLTREDELEKLVDYVMRFQTPR 89
          +GDG ++   E+EL+KLVDY  +FQ  R
Sbjct: 61 NGDGYIE---EEELDKLVDYAEKFQHKR 85

[Close]

BLAST of IVF0014252 vs. NCBI nr
Match: KAA0060895.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (552), Expect = 5.00e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV 108
           DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPKVPAQKPCHDGKSIV 108

[Close]

BLAST of IVF0014252 vs. NCBI nr
Match: KGN62514.1 (hypothetical protein Csa_021819 [Cucumis sativus])

HSP 1 Score: 192 bits (488), Expect = 3.09e-61
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
           MAMSRSQLKLTRDEVREILEEHDVDGDG+LTKQEVMQALNSMG++MSFQKAHYGVSHADK
Sbjct: 1   MAMSRSQLKLTRDEVREILEEHDVDGDGSLTKQEVMQALNSMGSMMSFQKAHYGVSHADK 60

Query: 61  DGDGKVDLTREDELEKLVDYVMRFQTPR---TPKVPKVPAQKPCHDGKSIV 108
           DGDGKVDL  E E+E L+DYVMRFQTPR   TPKVPKVPAQKPCHDGKSIV
Sbjct: 61  DGDGKVDLG-EAEMENLIDYVMRFQTPRAPKTPKVPKVPAQKPCHDGKSIV 110

[Close]

BLAST of IVF0014252 vs. NCBI nr
Match: KGN62521.1 (hypothetical protein Csa_021806 [Cucumis sativus])

HSP 1 Score: 137 bits (346), Expect = 9.76e-40
Identity = 74/94 (78.72%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
          MA SRSQLKLTRDEVREILEEHDVDGDG LTKQEVMQALNSMG +MSFQKAHYGV+ ADK
Sbjct: 1  MATSRSQLKLTRDEVREILEEHDVDGDGRLTKQEVMQALNSMGVMMSFQKAHYGVAFADK 60

Query: 61 DGDGKVDLTREDELEKLVDYVMRFQTPRTPKVPK 94
          DGDG VDL    E++ LVDYVMRFQ  +   VPK
Sbjct: 61 DGDGAVDL-EGGEIDSLVDYVMRFQASKD--VPK 91

[Close]

BLAST of IVF0014252 vs. NCBI nr
Match: KAE8652093.1 (hypothetical protein Csa_022146 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.11e-23
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDE-VREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHAD 60
          M++SRSQL L+RDE +++I EE+DVDGDG LTKQEVMQA+++MG  + FQ   +G+S AD
Sbjct: 1  MSVSRSQLNLSRDEMIKKIFEEYDVDGDGTLTKQEVMQAMDAMGFKILFQMTQFGISFAD 60

Query: 61 KDGDGKVDLTREDELEKLVDYVM 82
          +D DGKVD   +DELEKL+D V+
Sbjct: 61 RDDDGKVD---QDELEKLIDCVI 80

[Close]

BLAST of IVF0014252 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_022521 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 8.86e-22
Identity = 40/88 (45.45%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MAMSRSQLKLTRDEVREILEEHDVDGDGNLTKQEVMQALNSMGALMSFQKAHYGVSHADK 60
          M+ + ++L+L+R++++EI  EHD+DGDG L+  E+++A    G+++ F KAHYG++HAD+
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGKVDLTREDELEKLVDYVMRFQTPR 88
          +GDG ++   E+EL+KLVDY  +FQ  R
Sbjct: 61 NGDGFIE---EEELDKLVDYAQKFQHKR 85

The following BLAST results are available for this feature:

BLAST of IVF0014252 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0DZP5	3.5e-04	34.29	Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of IVF0014252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4S6	2.5e-53	100.00	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LNG3	6.6e-46	89.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1	[more]
A0A0A0LRC3	3.3e-29	78.72	EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=...	[more]
A0A0A0LP50	2.4e-19	62.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359910 PE=4 SV=1	[more]
A0A5A7UYC0	1.6e-15	46.59	Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of IVF0014252 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060895.1	5.00e-71	100.00	putative calcium-binding protein CML10 [Cucumis melo var. makuwa]	[more]
KGN62514.1	3.09e-61	89.19	hypothetical protein Csa_021819 [Cucumis sativus]	[more]
KGN62521.1	9.76e-40	78.72	hypothetical protein Csa_021806 [Cucumis sativus]	[more]
KAE8652093.1	2.11e-23	60.24	hypothetical protein Csa_022146 [Cucumis sativus]	[more]
KGN62516.1	8.86e-22	45.45	hypothetical protein Csa_022521 [Cucumis sativus]	[more]

BLAST of IVF0014252 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 14..42 e-value: 0.0013 score: 28.0
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 14..43 e-value: 1.3E-5 score: 24.6
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 10..45 score: 13.286007
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 14..68 e-value: 2.96397E-10 score: 49.8537
None	No IPR available	GENE3D	1.10.238.10		coord: 1..96 e-value: 1.4E-11 score: 46.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..108
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 23..35
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 9..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014252.2	IVF0014252.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding