IVF0014247 (gene) Melon (IVF77) v1

Overview


Name	IVF0014247
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein LTV1-like protein
Location	chr11: 3361660 .. 3361875 (-)
RNA-Seq Expression	IVF0014247
Synteny	IVF0014247

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAGCTGTTGAACTAGGACTAGCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCATGCCCTTAGCAATCATAGTAAGGATGATTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTATAG

mRNA sequence

ATGGATGCAGCTGTTGAACTAGGACTAGCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCATGCCCTTAGCAATCATAGTAAGGATGATTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTATAG

Coding sequence (CDS)

ATGGATGCAGCTGTTGAACTAGGACTAGCATCTAGCAACAGTGGTGGCATTGATTGTGACGAACCCTGTATAGCCAAAGAGGACGAGTCCCTTGCCCAAAAGCTCAATCATGCCCTTAGCAATCATAGTAAGGATGATTTGGAGCTTGAGCAAGGATGTAAGGCTCCAGCGAATATATTGAGTGGTAAAGGAGTAGAAGATAAAGAGATTTTATAG

Protein sequence

MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKGVEDKEIL

Homology

[Close]

BLAST of IVF0014247 vs. ExPASy TrEMBL
Match: A0A5A7TR06 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003470 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60
          MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL
Sbjct: 1  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60

Query: 61 SGKGVEDK 69
          S  G++D+
Sbjct: 61 SDNGIKDE 68

[Close]

BLAST of IVF0014247 vs. ExPASy TrEMBL
Match: A0A5D3BI16 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00230 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 5  VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKG 64
          VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS  G
Sbjct: 20 VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSDNG 79

Query: 65 VEDK 69
          ++D+
Sbjct: 80 IKDE 83

[Close]

BLAST of IVF0014247 vs. ExPASy TrEMBL
Match: A0A5D3CI19 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001180 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 2   DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS 61
           D  +    ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILS
Sbjct: 292 DTLLSRDYASSNCDDTDCDEPCIAEEDESLAQKLNHALGNHSKDDLELEQGYKAPADILS 351

Query: 62  GK-GVEDKEIL 72
           GK GVEDKE+L
Sbjct: 352 GKEGVEDKELL 362

[Close]

BLAST of IVF0014247 vs. ExPASy TrEMBL
Match: A0A1S3BKZ8 (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-19
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 2   DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS 61
           D  +    ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+ILS
Sbjct: 292 DTLLSRDYASSNCDDTDCDEPCIAEEDESLAQKLNHALGNHSKDDLELEQGYKAPADILS 351

Query: 62  GK-GVEDKEIL 72
           GK GVEDKE+L
Sbjct: 352 GKEGVEDKELL 362

[Close]

BLAST of IVF0014247 vs. ExPASy TrEMBL
Match: A0A0A0L517 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 2   DAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS 61
           D  +    ASS+S G DCDEPCIA+E+ESLAQKLNHAL NHSKDDLELEQG KAPA+ILS
Sbjct: 292 DTLLNRDYASSDSDGTDCDEPCIAEEEESLAQKLNHALGNHSKDDLELEQGYKAPADILS 351

Query: 62  GK-GVEDKEIL 72
           GK G EDKE+L
Sbjct: 352 GKEGAEDKELL 362

[Close]

BLAST of IVF0014247 vs. NCBI nr
Match: KAA0045822.1 (protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 4.75e-38
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60
          MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL
Sbjct: 1  MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60

Query: 61 SGKGVEDKEIL 71
          S  G++D+ + 
Sbjct: 61 SDNGIKDEFVF 71

[Close]

BLAST of IVF0014247 vs. NCBI nr
Match: TYJ99460.1 (protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 5.68e-35
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 5  VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSGKG 64
          VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILS  G
Sbjct: 20 VELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANILSDNG 79

Query: 65 VEDKEIL 71
          ++D+ + 
Sbjct: 80 IKDEFVF 86

[Close]

BLAST of IVF0014247 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like protein [Cucumis melo var. makuwa] >TYK11461.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 3.83e-25
Identity = 54/72 (75.00%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1   MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60
            D  +    ASSN    DCDEPCIA+EDESLAQKLNHAL NHSKDDLELEQG KAPA+IL
Sbjct: 291 FDTLLSRDYASSNCDDTDCDEPCIAEEDESLAQKLNHALGNHSKDDLELEQGYKAPADIL 350

Query: 61  SGK-GVEDKEIL 71
           SGK GVEDKE+L
Sbjct: 351 SGKEGVEDKELL 362

[Close]

BLAST of IVF0014247 vs. NCBI nr
Match: XP_011650323.1 (protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_009930 [Cucumis sativus])

HSP 1 Score: 107 bits (266), Expect = 5.26e-25
Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1   MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60
            D  +    ASS+S G DCDEPCIA+E+ESLAQKLNHAL NHSKDDLELEQG KAPA+IL
Sbjct: 291 FDTLLNRDYASSDSDGTDCDEPCIAEEEESLAQKLNHALGNHSKDDLELEQGYKAPADIL 350

Query: 61  SGK-GVEDKEIL 71
           SGK G EDKE+L
Sbjct: 351 SGKEGAEDKELL 362

[Close]

BLAST of IVF0014247 vs. NCBI nr
Match: XP_038898842.1 (protein LTV1 homolog [Benincasa hispida])

HSP 1 Score: 100 bits (249), Expect = 1.16e-22
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1   MDAAVELGLASSNSGGIDCDEPCIAKEDESLAQKLNHALSNHSKDDLELEQGCKAPANIL 60
            D  +    ASS++ G DCDEPCIA+EDESLAQKLNHAL NHSKD+ ELEQG KAPA+IL
Sbjct: 291 FDTLLNRDYASSDNEGTDCDEPCIAEEDESLAQKLNHALGNHSKDEFELEQGYKAPADIL 350

Query: 61  SGK-GVEDKEIL 71
           +GK G+ED E+L
Sbjct: 351 NGKEGLEDLELL 362

The following BLAST results are available for this feature:

BLAST of IVF0014247 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014247 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR06	2.0e-27	92.65	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BI16	2.5e-25	92.19	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CI19	1.2e-19	76.06	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BKZ8	1.2e-19	76.06	protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1	[more]
A0A0A0L517	1.6e-19	74.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1	[more]

BLAST of IVF0014247 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045822.1	4.75e-38	88.73	protein LTV1-like protein [Cucumis melo var. makuwa]	[more]
TYJ99460.1	5.68e-35	88.06	protein LTV1-like protein [Cucumis melo var. makuwa]	[more]
XP_008448616.1	3.83e-25	75.00	PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like p...	[more]
XP_011650323.1	5.26e-25	73.61	protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_0099...	[more]
XP_038898842.1	1.16e-22	68.06	protein LTV1 homolog [Benincasa hispida]	[more]

BLAST of IVF0014247 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014247.1	IVF0014247.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis
biological_process	GO:0000056	ribosomal small subunit export from nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030688	preribosome, small subunit precursor