IVF0014234 (gene) Melon (IVF77) v1

Overview
NameIVF0014234
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionIntegrase_H2C2 domain-containing protein
Locationchr04: 13342300 .. 13343072 (-)
RNA-Seq ExpressionIVF0014234
SyntenyIVF0014234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAACGCAGGCAACAAGAGACATCTTCAAGAATGGGGTGCTAGAGAAGATGATAGACCCTAATAGCTTCTTGATACCCTACTCGATAGGCGGAATGGATTTGGGTCGTGCTCTATGTGACCTTAAAGCAAGCATCAATTTCATGTCTCTTTCTATCTTCATGAAATTAGAGATAAGGGAGGTTTAACCAACTCACATAAGGCTTCAGTTTGCTGACAGATCCATCGTCAAGCTAAAGAGCAAGATTGGAGATTTTTTAGTGAAGGTGGATAAATATTTGTTTCCCGCTGACTTCGTTATGCTGGATTATGAAGTTGACTGAGAGTTTCCAATCATTTTGGGGCGGCCATTCCTATCAATTGTCTGCACCCTCATAGACGTCCACCAAGAGGAGTTGACAATGTGTTTTAATAATGAAGAAGTTAAGTTCAAAATTATCAATGTGATGTAGTTCCCCACTGATGATGAAACCTACAGTGCGATAGAGTCCCTTCGATGGGACTATTGCGAGGAAGAAGTCTATCATGAGCTATTCAACACTGAAGAATTCTTTGAAGAAGAAGACCTAAGTTATATACTGAAAGAAGTAAACATCGTGTCTGGCGAAAGGAATTTGAGTCTTTGGATTTGCAAACCAAAGGCAAGAAGAAGACAAAGCCATCAATCGAAGAACCACCAAAGTTAGAGCTCAAGCATTTACCCAATCACCTAAAGTATGCATACTTGAGGGAGAATGACACTCTTCCAATCATTATATCCACCCACTAG

mRNA sequence

ATGGCTTTAACGCAGGCAACAAGAGACATCTTCAAGAATGGGGTGCTAGAGAAGATGATAGACCCTAATAGCTTCTTGATACCCTACTCGATAGGCGGAATGGATTTGGGTCGTGCTCTATGTGACCTTAAAGCAAGCATCAATTTCATGTCTCTTTCTATCTTCATGAAATTAGAGATAAGGGAGTTCCCCACTGATGATGAAACCTACAGTGCGATAGAGTCCCTTCGATGGGACTATTGCGAGGAAGAAGTCTATCATGAGCTATTCAACACTGAAGAATTCTTTGAAGAAGAAGACCTAAGTTATATACTGAAAGAATCTTTGGATTTGCAAACCAAAGGCAAGAAGAAGACAAAGCCATCAATCGAAGAACCACCAAAGTTAGAGCTCAAGCATTTACCCAATCACCTAAAGTATGCATACTTGAGGGAGAATGACACTCTTCCAATCATTATATCCACCCACTAG

Coding sequence (CDS)

ATGGCTTTAACGCAGGCAACAAGAGACATCTTCAAGAATGGGGTGCTAGAGAAGATGATAGACCCTAATAGCTTCTTGATACCCTACTCGATAGGCGGAATGGATTTGGGTCGTGCTCTATGTGACCTTAAAGCAAGCATCAATTTCATGTCTCTTTCTATCTTCATGAAATTAGAGATAAGGGAGTTCCCCACTGATGATGAAACCTACAGTGCGATAGAGTCCCTTCGATGGGACTATTGCGAGGAAGAAGTCTATCATGAGCTATTCAACACTGAAGAATTCTTTGAAGAAGAAGACCTAAGTTATATACTGAAAGAATCTTTGGATTTGCAAACCAAAGGCAAGAAGAAGACAAAGCCATCAATCGAAGAACCACCAAAGTTAGAGCTCAAGCATTTACCCAATCACCTAAAGTATGCATACTTGAGGGAGAATGACACTCTTCCAATCATTATATCCACCCACTAG

Protein sequence

MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIREFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKESLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLPIIISTH
Homology
BLAST of IVF0014234 vs. ExPASy TrEMBL
Match: A0A5A7T4Y2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001390 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.1e-69
Identity = 139/150 (92.67%), Postives = 139/150 (92.67%), Query Frame = 0

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI
Sbjct: 52  MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 111

Query: 61  REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILK-----------ESL 120
           REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILK           ESL
Sbjct: 112 REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESL 171

Query: 121 DLQTKGKKKTKPSIEEPPKLELKHLPNHLK 140
           DLQTKGKKKTKPSIEEPPKLELKHLPNHLK
Sbjct: 172 DLQTKGKKKTKPSIEEPPKLELKHLPNHLK 201

BLAST of IVF0014234 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 114/186 (61.29%), Postives = 128/186 (68.82%), Query Frame = 0

Query: 6   ATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIRE--- 65
           AT DIFKNG+ EKM +P+SF +P SIG MDLGRALC+L+ SIN M LSIF KLEIRE   
Sbjct: 69  ATSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQP 128

Query: 66  ---------------------FPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDL 125
                                FPTDDE  + IE L W+Y E+E Y ELF+TEEFFEE+D 
Sbjct: 129 THIRLYFADKFIAKPEDKIKDFPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDP 188

Query: 126 SYILK-----------ESLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLP 157
           SYILK           ESLDLQ KG+KKTKPSIEEPP+LELK LPNHLKY YLRENDTLP
Sbjct: 189 SYILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLP 248

BLAST of IVF0014234 vs. ExPASy TrEMBL
Match: A0A5D3BM69 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold316G00120 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 5.1e-39
Identity = 97/167 (58.08%), Postives = 116/167 (69.46%), Query Frame = 0

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           +ALTQAT +IFKNGV +KM DP SF IPYSIG +DLGRALC+L+A++N + LSIF KL+I
Sbjct: 32  VALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALCELRATMNLLPLSIFKKLKI 91

Query: 61  REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILK-----------ESL 120
            E           + L      EE Y+ELF+TEEF EE++  Y L+           E L
Sbjct: 92  GEVQPTHMRLQHTDLL------EEAYYELFSTEEFLEEDEPDYKLEEVNTFFGKRKFEPL 151

Query: 121 DLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLPIIISTH 157
           DLQTK +KK KPSI+EP +LELK LPNHLKYAYL ENDTLPIIIS H
Sbjct: 152 DLQTKDEKKIKPSIKEPLELELKPLPNHLKYAYLGENDTLPIIISAH 192

BLAST of IVF0014234 vs. ExPASy TrEMBL
Match: A0A5D3C0Z2 (Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00690 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.3e-38
Identity = 100/192 (52.08%), Postives = 116/192 (60.42%), Query Frame = 0

Query: 2   ALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIR 61
           AL +  + + + G  EK+ DP+S  IPYSI  M L RAL DL+ SIN M LSI  KL I 
Sbjct: 23  ALLRNKQHLQEWGTCEKITDPSSLTIPYSIAKMHLDRALFDLRKSINLMPLSILKKLRIG 82

Query: 62  E--------------------------FPTDDETYSAIESLRWDYCEEEVYHELFNTEEF 121
           E                          FP D E+ +AIE L WDYCEEE Y+ELF+T+EF
Sbjct: 83  EVQQPHMRLQLANRSIAKPEGKIEEFFFPIDVESCNAIECLGWDYCEEEAYYELFSTKEF 142

Query: 122 FEEEDLSYILK-----------ESLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLR 157
            EE+   YILK           ESLDLQTKG+ KT+ SIEEPPKLELK LPNHLKYAYLR
Sbjct: 143 LEEDKPYYILKEVNTVSGKNKFESLDLQTKGENKTQASIEEPPKLELKPLPNHLKYAYLR 202

BLAST of IVF0014234 vs. ExPASy TrEMBL
Match: A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.5e-30
Identity = 93/192 (48.44%), Postives = 101/192 (52.60%), Query Frame = 0

Query: 34  MDLGRALCDLKASINFMSLSIFMKLEIRE------------------------------- 93
           MDLGRAL DL ASIN M LSIF KLEI E                               
Sbjct: 1   MDLGRALSDLGASINLMPLSIFKKLEIWEVQPTDMRLQFVDRSIAKPEGKIEDVLVKPFL 60

Query: 94  --------------------------------FPTDDETYSAIESLRWDYCEEEVYHELF 152
                                           FP +D  Y+AIESL WDYC+EE YHELF
Sbjct: 61  LIGRALIDVHQVELSMCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELF 120

BLAST of IVF0014234 vs. NCBI nr
Match: KAA0038053.1 (uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK20551.1 uncharacterized protein E5676_scaffold237G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (687), Expect = 1.91e-88
Identity = 142/160 (88.75%), Postives = 144/160 (90.00%), Query Frame = 0

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI
Sbjct: 52  MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 111

Query: 61  REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKE-----------SL 120
           REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKE           SL
Sbjct: 112 REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESL 171

Query: 121 DLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTL 149
           DLQTKGKKKTKPSIEEPPKLELKHLPNHLK    +E DT+
Sbjct: 172 DLQTKGKKKTKPSIEEPPKLELKHLPNHLKLEEGQE-DTI 210

BLAST of IVF0014234 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 205 bits (521), Expect = 2.30e-62
Identity = 114/186 (61.29%), Postives = 128/186 (68.82%), Query Frame = 0

Query: 6   ATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIRE--- 65
           AT DIFKNG+ EKM +P+SF +P SIG MDLGRALC+L+ SIN M LSIF KLEIRE   
Sbjct: 69  ATSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQP 128

Query: 66  ---------------------FPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDL 125
                                FPTDDE  + IE L W+Y E+E Y ELF+TEEFFEE+D 
Sbjct: 129 THIRLYFADKFIAKPEDKIKDFPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDP 188

Query: 126 SYILKE-----------SLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLP 156
           SYILKE           SLDLQ KG+KKTKPSIEEPP+LELK LPNHLKY YLRENDTLP
Sbjct: 189 SYILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTLP 248

BLAST of IVF0014234 vs. NCBI nr
Match: TYJ99425.1 (uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 2.09e-48
Identity = 97/167 (58.08%), Postives = 116/167 (69.46%), Query Frame = 0

Query: 1   MALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEI 60
           +ALTQAT +IFKNGV +KM DP SF IPYSIG +DLGRALC+L+A++N + LSIF KL+I
Sbjct: 32  VALTQATNNIFKNGVPKKMTDPGSFTIPYSIGILDLGRALCELRATMNLLPLSIFKKLKI 91

Query: 61  REFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKE-----------SL 120
            E           + L      EE Y+ELF+TEEF EE++  Y L+E            L
Sbjct: 92  GEVQPTHMRLQHTDLL------EEAYYELFSTEEFLEEDEPDYKLEEVNTFFGKRKFEPL 151

Query: 121 DLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLRENDTLPIIISTH 156
           DLQTK +KK KPSI+EP +LELK LPNHLKYAYL ENDTLPIIIS H
Sbjct: 152 DLQTKDEKKIKPSIKEPLELELKPLPNHLKYAYLGENDTLPIIISAH 192

BLAST of IVF0014234 vs. NCBI nr
Match: KAA0040570.1 (uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK05613.1 uncharacterized protein E5676_scaffold98G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 3.39e-46
Identity = 100/192 (52.08%), Postives = 116/192 (60.42%), Query Frame = 0

Query: 2   ALTQATRDIFKNGVLEKMIDPNSFLIPYSIGGMDLGRALCDLKASINFMSLSIFMKLEIR 61
           AL +  + + + G  EK+ DP+S  IPYSI  M L RAL DL+ SIN M LSI  KL I 
Sbjct: 23  ALLRNKQHLQEWGTCEKITDPSSLTIPYSIAKMHLDRALFDLRKSINLMPLSILKKLRIG 82

Query: 62  E--------------------------FPTDDETYSAIESLRWDYCEEEVYHELFNTEEF 121
           E                          FP D E+ +AIE L WDYCEEE Y+ELF+T+EF
Sbjct: 83  EVQQPHMRLQLANRSIAKPEGKIEEFFFPIDVESCNAIECLGWDYCEEEAYYELFSTKEF 142

Query: 122 FEEEDLSYILKE-----------SLDLQTKGKKKTKPSIEEPPKLELKHLPNHLKYAYLR 156
            EE+   YILKE           SLDLQTKG+ KT+ SIEEPPKLELK LPNHLKYAYLR
Sbjct: 143 LEEDKPYYILKEVNTVSGKNKFESLDLQTKGENKTQASIEEPPKLELKPLPNHLKYAYLR 202

BLAST of IVF0014234 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 4.43e-39
Identity = 93/192 (48.44%), Postives = 101/192 (52.60%), Query Frame = 0

Query: 34  MDLGRALCDLKASINFMSLSIFMKLEIRE------------------------------- 93
           MDLGRAL DL ASIN M LSIF KLEI E                               
Sbjct: 1   MDLGRALSDLGASINLMPLSIFKKLEIWEVQPTDMRLQFVDRSIAKPEGKIEDVLVKPFL 60

Query: 94  --------------------------------FPTDDETYSAIESLRWDYCEEEVYHELF 151
                                           FP +D  Y+AIESL WDYC+EE YHELF
Sbjct: 61  LIGRALIDVHQVELSMCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELF 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T4Y26.1e-6992.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UF791.4e-4961.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BM695.1e-3958.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C0Z23.3e-3852.08Integrase_H2C2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UE992.5e-3048.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0038053.11.91e-8888.75uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0052866.12.30e-6261.29uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04... [more]
TYJ99425.12.09e-4858.08uncharacterized protein E5676_scaffold316G00120 [Cucumis melo var. makuwa][more]
KAA0040570.13.39e-4652.08uncharacterized protein E6C27_scaffold262G001400 [Cucumis melo var. makuwa] >TYK... [more]
KAA0054122.14.43e-3948.44uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 107..154
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 107..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014234.2IVF0014234.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process