IVF0014198 (gene) Melon (IVF77) v1

Overview


Name	IVF0014198
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr02: 16445848 .. 16446734 (+)
RNA-Seq Expression	IVF0014198
Synteny	IVF0014198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCTTCCAATGAGTGGCGAACGCTCGTCTTGTGTCAGAAACCACAGGAAATGCACTTGCAGCAAAGGAAACGGGCAGCGCTCGAGGACTTCCGGTGCTCGTCCCACGAAAACGGGAGCGCGAATGCATCAGACTCTGTTTTCTCGTCCTTGGCCAAAAAGCGGTCCCCCCGACGGTTTCTTCCCTTTGCTACGTAATTGTCATAAGTCTTTCGATCTTCGAGGTTCGTACTCCAAGGTCTTCAACCCACACTCCTGACATGCTCCCTTTCACGTTTTCCTGAGGTATAGGTTGGCAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCCACCGAAAACGGTCCAAAAGATGGCCAATGTTTCCAACGAGTGGCGAACGCTTGTCAGGTGTCAGAAACCACAGGAAATGCATTTGCATTGAAGGAAACGGACTGAGCTCGAGGACCTCCGGTACTCGTCCCATGAAAACGCAAGCGAGAATGCTCCAGATTCAGTTTTCTCGTCCTAGAGCAAAAAGCTGTCTCCCGACGGTTTCTTCTCTTGGCTCCGTATTGGTCATAAGTCTTTCAATCTTTGGGGCTCGTGCTCCGAGGACTTCAACCCACACTCTTGGCATGCTCTCTGACACATTTTTCAGAGGTATAGGTTGGAAAGCGAGCTCGTTGGAGGGAGAACTTTTGTGCGACCCAAAACGGTCCAAAAGATGGCCAATACTTCCAACGAGTGGCGAAAGCTCGTCCGGTGTCAAAAACTACTGGAAATGCACTTGGAGCGATGGAAATAGACTGAGCTCGAGCACTTCTAGTGCTCGTCACAAGAAAACGCAAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGCAAAAAGCGGTCCCCTGA

mRNA sequence

ATGGCCAATGCTTCCAATGAGTGGCGAACCTCGTCCGGTGTCAAAAACTACTGGAAATGCACTTGGAGCGATGGAAATAGACTGAGCTCGAGCACTTCTAGTGCTCGTCACAAGAAAACGCAAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGCAAAAAGCGGTCCCCTGA

Coding sequence (CDS)

ATGGCCAATGCTTCCAATGAGTGGCGAACCTCGTCCGGTGTCAAAAACTACTGGAAATGCACTTGGAGCGATGGAAATAGACTGAGCTCGAGCACTTCTAGTGCTCGTCACAAGAAAACGCAAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGGCAAAAAGCGGTCCCCTGA

Protein sequence

MANASNEWRTSSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKAVP

Homology

[Close]

BLAST of IVF0014198 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-08
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 11  SSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKAVP 59
           SSGV+N WKCT  +GN LSS TS AR KKT+ARMP+TQFSRPG K+ P
Sbjct: 265 SSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDP 312

[Close]

BLAST of IVF0014198 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 9   RTSSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRP 53
           + SSGVKN+WKCT  + NRLSS TSS R KKT+ARMPRTQFSRP
Sbjct: 127 KRSSGVKNHWKCTCREENRLSSRTSSVRPKKTRARMPRTQFSRP 170

[Close]

BLAST of IVF0014198 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 11  SSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPG 54
           SSGV+N+WKCT S+GN LSS TS AR KKT A MPRTQFSRPG
Sbjct: 219 SSGVRNHWKCTCSEGNGLSSRTSGARPKKTPAGMPRTQFSRPG 261

[Close]

BLAST of IVF0014198 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 11 SSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKA 57
          SSG +N+WKCT S+GN LSS TS AR KKT+A MPRTQFSRPG K+
Sbjct: 41 SSGFRNHWKCTCSEGNGLSSRTSGARPKKTRAGMPRTQFSRPGVKS 86

[Close]

BLAST of IVF0014198 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 14 VKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKAVP 59
          V+N+WKC  S+GN LSS TS AR KKT+ARMP TQFSRPG K+ P
Sbjct: 12 VRNHWKCACSEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDP 56

[Close]

BLAST of IVF0014198 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.61e-10
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 11  SSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKAVP 58
           SSGV+N WKCT  +GN LSS TS AR KKT+ARMP+TQFSRPG K+ P
Sbjct: 265 SSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDP 312

[Close]

BLAST of IVF0014198 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.33e-10
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 11 SSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKA 56
          SSG +N+WKCT S+GN LSS TS AR KKT+A MPRTQFSRPG K+
Sbjct: 41 SSGFRNHWKCTCSEGNGLSSRTSGARPKKTRAGMPRTQFSRPGVKS 86

[Close]

BLAST of IVF0014198 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 2.74e-10
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 9   RTSSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRP 52
           + SSGVKN+WKCT  + NRLSS TSS R KKT+ARMPRTQFSRP
Sbjct: 127 KRSSGVKNHWKCTCREENRLSSRTSSVRPKKTRARMPRTQFSRP 170

[Close]

BLAST of IVF0014198 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.18e-10
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 11  SSGVKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPG 53
           SSGV+N+WKCT S+GN LSS TS AR KKT A MPRTQFSRPG
Sbjct: 219 SSGVRNHWKCTCSEGNGLSSRTSGARPKKTPAGMPRTQFSRPG 261

[Close]

BLAST of IVF0014198 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.90e-09
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 14 VKNYWKCTWSDGNRLSSSTSSARHKKTQARMPRTQFSRPGQKAVP 58
          V+N+WKC  S+GN LSS TS AR KKT+ARMP TQFSRPG K+ P
Sbjct: 12 VRNHWKCACSEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDP 56

The following BLAST results are available for this feature:

BLAST of IVF0014198 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFP2	5.0e-08	70.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E5W4	1.1e-07	75.00	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7VGB1	1.5e-07	76.74	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]
A0A5A7SLK2	1.5e-07	71.74	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3CQ36	1.2e-06	68.89	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of IVF0014198 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22521.1	1.61e-10	70.83	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0026022.1	2.33e-10	71.74	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0035524.1	2.74e-10	75.00	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0066117.1	3.18e-10	76.74	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]
KAA0037172.1	3.90e-09	68.89	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas...	[more]

BLAST of IVF0014198 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014198.1	IVF0014198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity