IVF0014176 (gene) Melon (IVF77) v1

Overview


Name	IVF0014176
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Non-specific serine/threonine protein kinase
Location	chr08: 6557791 .. 6558476 (-)
RNA-Seq Expression	IVF0014176
Synteny	IVF0014176

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGGGGAAAATGCTTGTTTGTATCGCATTTTCTAAGACAGATTGGAAATGTTTTCGGCTTTTACAGAAATGGATTGGTAAAGGCTGAGAAGATGAAAAGTTGGATCTTATCGATTCATTTTGGACAGGAAAATCTTGTGGCAGTTGGTAATATGCTCCGTTTAATTGCTTAAGAGCTGCCATAGGGAGGCGGATTACAAGTCTTCAAAAATTCTTTTGGCTGCAGTACTAGGATCACCCAGTATGCACTCGGGGATTGTTTTGTTCCAAACAATCAGCAAATGCTCTATATTTTCAATTTGATTTCAACATATGCTTCCTCTTCGCTATTCTGCAAGCCTTTCCTTCAATCACATCATCTTAACCAAATCAATTCAATCAAGACCATCGAACTTCTTCAATGGGGTAAACTTTGTTTCACTCCAATGGTAGTCGATGAGATCAACGCTTCAGATTTTCCAGTGATGAAGAGGAATCCCATGTTTTCCAGTCATCAACACTTCAGATTTTCCAATGAGGTAAACTTGTTCATTTGTTCGAACTTAGAAGCACACCATGCATGCTTGAGGATGGTTCAGTGATGACTGGTTCTAGGAAAACTATTGTGTTTACTGTTTAGCTTAATCCTGCTGCAGGGAAGTTGATCCATAAACACACTTCTGATCTCTCATCACCTGCCTAA

mRNA sequence

ATGTCTTGGGGAAAATGCTTGTTTGTATCGCATTTTCTAAGACAGATTGGAAATGTTTTCGGCTTTTACAGAAATGGATTGGTAAAGGCTGAGAAGATGAAAAGTTGGATCTTATCGATTCATTTTGGACAGGAAAATCTTGTGGCAGTTGTACTAGGATCACCCAGTATGCACTCGGGGATTGTTTTGTTCCAAACAATCAGCAAATTCGATGAGATCAACGCTTCAGATTTTCCAGTGATGAAGAGGAATCCCATGTTTTCCAGTCATCAACACTTCAGATTTTCCAATGAGCTTAATCCTGCTGCAGGGAAGTTGATCCATAAACACACTTCTGATCTCTCATCACCTGCCTAA

Coding sequence (CDS)

ATGTCTTGGGGAAAATGCTTGTTTGTATCGCATTTTCTAAGACAGATTGGAAATGTTTTCGGCTTTTACAGAAATGGATTGGTAAAGGCTGAGAAGATGAAAAGTTGGATCTTATCGATTCATTTTGGACAGGAAAATCTTGTGGCAGTTGTACTAGGATCACCCAGTATGCACTCGGGGATTGTTTTGTTCCAAACAATCAGCAAATTCGATGAGATCAACGCTTCAGATTTTCCAGTGATGAAGAGGAATCCCATGTTTTCCAGTCATCAACACTTCAGATTTTCCAATGAGCTTAATCCTGCTGCAGGGAAGTTGATCCATAAACACACTTCTGATCTCTCATCACCTGCCTAA

Protein sequence

MSWGKCLFVSHFLRQIGNVFGFYRNGLVKAEKMKSWILSIHFGQENLVAVVLGSPSMHSGIVLFQTISKFDEINASDFPVMKRNPMFSSHQHFRFSNELNPAAGKLIHKHTSDLSSPA

Homology

[Close]

BLAST of IVF0014176 vs. ExPASy TrEMBL
Match: A0A0A0KFB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486780 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-35
Identity = 92/154 (59.74%), Postives = 99/154 (64.29%), Query Frame = 0


Query: 1   MSWGKCLFVSHFLRQIGNVFGFYRNGLVKAEKMKSWILSIHFGQENLVAVVLGSPSMHSG 60
           MSWGKCLFV HFLRQIGNVF FYRNGLVKAEKMK+W  SI  GQENL+ +VLGS SM SG
Sbjct: 1   MSWGKCLFVPHFLRQIGNVFSFYRNGLVKAEKMKTW-TSIQSGQENLMQLVLGSRSMVSG 60

Query: 61  IVL-----------------FQT--------------------ISKFDEINASDFPVMKR 117
           IV                  FQT                    +     INA+DFPVMKR
Sbjct: 61  IVFVSSKSANASSFFLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKR 120

[Close]

BLAST of IVF0014176 vs. ExPASy TrEMBL
Match: A0A5A7SKB8 (Non-specific serine/threonine protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00610 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.8e-19
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 34   KSWILSIHFGQENLVAVVLGSPSMHSGIVLFQTISKFDEINASDFPVMKRNPMFSSHQHF 93
            K ++ S H  Q N +  +     +  G + F T    DEINASDFPVMKRNPMFSSHQHF
Sbjct: 2076 KPFLQSHHLNQINSIKTI---ELLQWGKLCF-TPMVVDEINASDFPVMKRNPMFSSHQHF 2135

Query: 94   RFSNELNPAAGKLIHKHTSDLSSPA 119
            RFSNELNPAAGKLIHKHTSDLSSPA
Sbjct: 2136 RFSNELNPAAGKLIHKHTSDLSSPA 2156

[Close]

BLAST of IVF0014176 vs. ExPASy TrEMBL
Match: A0A5D3CKJ0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00220 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.8e-19
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 34   KSWILSIHFGQENLVAVVLGSPSMHSGIVLFQTISKFDEINASDFPVMKRNPMFSSHQHF 93
            K ++ S H  Q N +  +     +  G + F T    DEINASDFPVMKRNPMFSSHQHF
Sbjct: 1140 KPFLQSHHLNQINSIKTI---ELLQWGKLCF-TPMVVDEINASDFPVMKRNPMFSSHQHF 1199

Query: 94   RFSNELNPAAGKLIHKHTSDLSSPA 119
            RFSNELNPAAGKLIHKHTSDLSSPA
Sbjct: 1200 RFSNELNPAAGKLIHKHTSDLSSPA 1220

[Close]

BLAST of IVF0014176 vs. NCBI nr
Match: KAE8647474.1 (hypothetical protein Csa_003458 [Cucumis sativus])

HSP 1 Score: 125 bits (314), Expect = 4.94e-31
Identity = 79/140 (56.43%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 15  QIGNVFGFYRNGLVKAEKMKSWILSIHFGQENLVAVVLGSPSMHSGIVL----------- 74
           QIGNVF FYRNGLVKAEKMK+W  SI  GQENL+ +VLGS SM SGIV            
Sbjct: 360 QIGNVFSFYRNGLVKAEKMKTWT-SIQSGQENLMQLVLGSRSMVSGIVFVSSKSANASSF 419

Query: 75  ------FQTIS--------------------KFDEINASDFPVMKRNPMFSSHQHFRFSN 116
                 FQT+                         INA+DFPVMKR P+FSSHQHFRFSN
Sbjct: 420 FLNFTDFQTLDPNVGLGSQISGLSTQLLELKSVYVINATDFPVMKRIPIFSSHQHFRFSN 479

[Close]

BLAST of IVF0014176 vs. NCBI nr
Match: TYK12447.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 3.51e-22
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 34   KSWILSIHFGQENLVAVVLGSPSMHSGIVLFQTISKFDEINASDFPVMKRNPMFSSHQHF 93
            K ++ S H  Q N +  +     +  G + F T    DEINASDFPVMKRNPMFSSHQHF
Sbjct: 1140 KPFLQSHHLNQINSIKTI---ELLQWGKLCF-TPMVVDEINASDFPVMKRNPMFSSHQHF 1199

Query: 94   RFSNELNPAAGKLIHKHTSDLSSPA 118
            RFSNELNPAAGKLIHKHTSDLSSPA
Sbjct: 1200 RFSNELNPAAGKLIHKHTSDLSSPA 1220

[Close]

BLAST of IVF0014176 vs. NCBI nr
Match: KAA0025572.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 3.59e-22
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 34   KSWILSIHFGQENLVAVVLGSPSMHSGIVLFQTISKFDEINASDFPVMKRNPMFSSHQHF 93
            K ++ S H  Q N +  +     +  G + F T    DEINASDFPVMKRNPMFSSHQHF
Sbjct: 2076 KPFLQSHHLNQINSIKTI---ELLQWGKLCF-TPMVVDEINASDFPVMKRNPMFSSHQHF 2135

Query: 94   RFSNELNPAAGKLIHKHTSDLSSPA 118
            RFSNELNPAAGKLIHKHTSDLSSPA
Sbjct: 2136 RFSNELNPAAGKLIHKHTSDLSSPA 2156

The following BLAST results are available for this feature:

BLAST of IVF0014176 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014176 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFB7	4.4e-35	59.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486780 PE=4 SV=1	[more]
A0A5A7SKB8	9.8e-19	65.88	Non-specific serine/threonine protein kinase OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5D3CKJ0	9.8e-19	65.88	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of IVF0014176 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647474.1	4.94e-31	56.43	hypothetical protein Csa_003458 [Cucumis sativus]	[more]
TYK12447.1	3.51e-22	65.88	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
KAA0025572.1	3.59e-22	65.88	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014176 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014176.1	IVF0014176.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity