IVF0014125 (gene) Melon (IVF77) v1

Overview


Name	IVF0014125
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr02: 19455369 .. 19455536 (-)
RNA-Seq Expression	IVF0014125
Synteny	IVF0014125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACAACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACAACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACAACCTAGCCGCATCGATGTTCACCGATTGGCAGTTCCGTAACGCTTAG

Protein sequence

MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA

Homology

[Close]

BLAST of IVF0014125 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0014125 vs. ExPASy TrEMBL
Match: A0A5A7TTQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003600 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0014125 vs. ExPASy TrEMBL
Match: A0A5A7UMZ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00690 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0014125 vs. ExPASy TrEMBL
Match: A0A5D3BM56 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00450 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 308 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 362

[Close]

BLAST of IVF0014125 vs. ExPASy TrEMBL
Match: A0A5A7STY2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00110 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 56
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 313 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 367

[Close]

BLAST of IVF0014125 vs. NCBI nr
Match: KAA0043059.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.30e-31
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55
          MTYCDDV+DEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 1  MTYCDDVQDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55

[Close]

BLAST of IVF0014125 vs. NCBI nr
Match: KAA0038851.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 1.07e-30
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55
          MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRD+LA SMFTDWQFRNA
Sbjct: 1  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFRNA 55

[Close]

BLAST of IVF0014125 vs. NCBI nr
Match: KAA0065284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 7.52e-30
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQF NA
Sbjct: 120 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFHNA 174

[Close]

BLAST of IVF0014125 vs. NCBI nr
Match: KAA0041029.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.86e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQW D+LAASMFTDWQFRNA
Sbjct: 53  MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWCDDLAASMFTDWQFRNA 107

[Close]

BLAST of IVF0014125 vs. NCBI nr
Match: KAA0051443.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 6.08e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 55
           MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA
Sbjct: 294 MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDWQFRNA 348

The following BLAST results are available for this feature:

BLAST of IVF0014125 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7X8	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TTQ6	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UMZ4	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BM56	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7STY2	3.1e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0014125 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043059.1	1.30e-31	98.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038851.1	1.07e-30	96.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065284.1	7.52e-30	98.18	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041029.1	1.86e-29	96.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051443.1	6.08e-29	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014125 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014125.1	IVF0014125.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding