IVF0014084 (gene) Melon (IVF77) v1

Overview


Name	IVF0014084
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr02: 14195102 .. 14195363 (-)
RNA-Seq Expression	IVF0014084
Synteny	IVF0014084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAAGGGAAGGAAGTGGAAGCAAATGTTGCTACCACAGAGAAAGAGTTAGTAGGAGGATCGTCCTCTAAGACTAGAGTTGGAATTTTAAATATGAAGAATAAAAGAAATGGGAAGACTCCCAAGAATAGTGTGGGAAAGAAAGTTGATAAAGGTAAATGTTACCATTGCAATGAGGACAGACATTGGTTGAGAAATTTTCCGAAGTACCTTACTCAGAAGAAAGCTGAGAAGGAAGCACAAGGAGACTAGTTCTTGA

mRNA sequence

ATGGGTAAAGGGAAGGAAGTGGAAGCAAATGTTGCTACCACAGAGAAAGAGTTAGTAGGAGGATCGTCCTCTAAGACTAGAGTTGGAATTTTAAATATGAAGAATAAAAGAAATGGGAAGACTCCCAAGAATAGTGTGGGAAAGAAAGTTGATAAAGAAATTTTCCGAAGTACCTTACTCAGAAGAAAGCTGAGAAGGAAGCACAAGGAGACTAGTTCTTGA

Coding sequence (CDS)

ATGGGTAAAGGGAAGGAAGTGGAAGCAAATGTTGCTACCACAGAGAAAGAGTTAGTAGGAGGATCGTCCTCTAAGACTAGAGTTGGAATTTTAAATATGAAGAATAAAAGAAATGGGAAGACTCCCAAGAATAGTGTGGGAAAGAAAGTTGATAAAGAAATTTTCCGAAGTACCTTACTCAGAAGAAAGCTGAGAAGGAAGCACAAGGAGACTAGTTCTTGA

Protein sequence

MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDKEIFRSTLLRRKLRRKHKETSS

Homology

[Close]

BLAST of IVF0014084 vs. ExPASy TrEMBL
Match: A0A5A7TV83 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00640 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.8e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 53
           MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK
Sbjct: 64  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 115

[Close]

BLAST of IVF0014084 vs. ExPASy TrEMBL
Match: A0A5D3E296 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00160 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.8e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 53
           MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK
Sbjct: 82  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 133

[Close]

BLAST of IVF0014084 vs. ExPASy TrEMBL
Match: A0A5A7U1L7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00660 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDKE 54
          +GKGKEVEANVATTEKELVGGSSSKTRVG LNMK KR GKTPKNS GKKV K+
Sbjct: 47 IGKGKEVEANVATTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSKGKKVAKD 99

[Close]

BLAST of IVF0014084 vs. ExPASy TrEMBL
Match: A0A5A7VKI4 (Glutaredoxin active site-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001040 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 46/52 (88.46%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1   MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 53
           MGKGKEVE NVATTEKELVGGSSSKTRVG LNMK KR GKTPKNS GKKV K
Sbjct: 67  MGKGKEVETNVATTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAK 118

[Close]

BLAST of IVF0014084 vs. ExPASy TrEMBL
Match: A0A5D3BYQ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.9e-13
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 53
           MGKGKEVE NV TTEKELVGGSSSKTRVG LNMK KR GKTPKNS GKKV K
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAK 154

[Close]

BLAST of IVF0014084 vs. NCBI nr
Match: KAA0046778.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.27e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 52
           MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK
Sbjct: 64  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 115

[Close]

BLAST of IVF0014084 vs. NCBI nr
Match: TYK29670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.53e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 52
           MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK
Sbjct: 82  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 133

[Close]

BLAST of IVF0014084 vs. NCBI nr
Match: KAA0047525.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26494.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.40e-19
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDKE 53
          +GKGKEVEANVATTEKELVGGSSSKTRVG LNMK KR GKTPKNS GKKV K+
Sbjct: 47 IGKGKEVEANVATTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSKGKKVAKD 99

[Close]

BLAST of IVF0014084 vs. NCBI nr
Match: KAA0051354.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.91e-18
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 52
          MGKGKEVEAN ATTEKELVGGSSSKTRVG LNMK KR G TPKNS GKKV K
Sbjct: 27 MGKGKEVEANFATTEKELVGGSSSKTRVGTLNMKKKRKGMTPKNSEGKKVAK 78

[Close]

BLAST of IVF0014084 vs. NCBI nr
Match: TYK23861.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.91e-18
Identity = 45/52 (86.54%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MGKGKEVEANVATTEKELVGGSSSKTRVGILNMKNKRNGKTPKNSVGKKVDK 52
          MGKGKEVEAN ATTEKELVGGSSSKTRVG LNMK KR G TPKNS GKKV K
Sbjct: 27 MGKGKEVEANFATTEKELVGGSSSKTRVGTLNMKKKRKGMTPKNSEGKKVAK 78

The following BLAST results are available for this feature:

BLAST of IVF0014084 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV83	8.8e-18	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G0064...	[more]
A0A5D3E296	8.8e-18	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00160...	[more]
A0A5A7U1L7	5.9e-14	86.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G0066...	[more]
A0A5A7VKI4	1.0e-13	88.46	Glutaredoxin active site-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3BYQ2	2.9e-13	86.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0010...	[more]

BLAST of IVF0014084 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046778.1	1.27e-24	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK29670.1	3.53e-24	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047525.1	1.40e-19	86.79	gag/pol protein [Cucumis melo var. makuwa] >TYK26494.1 gag/pol protein [Cucumis ...	[more]
KAA0051354.1	1.91e-18	86.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK23861.1	1.91e-18	86.54	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014084 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014084.1	IVF0014084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006749	glutathione metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding