IVF0014069 (gene) Melon (IVF77) v1

Overview


Name	IVF0014069
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr11: 7201762 .. 7202134 (+)
RNA-Seq Expression	IVF0014069
Synteny	IVF0014069

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAATTTCGTTCAGAGCAAAGTTTAAGATCTTACGGGTAAAAAGGTGGGATAAGTACGACTACTCCCATCTGAATGAAGATCAAATAGCGAAATGGTTGAAAACCAACGCTCATCTCTCTCTCGAGAAGAAAACCAGTACCTTCACGCAAAGAATTCAATTATGACCTTCATCGTTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAACAGTCATCCACACCATTTTCAATGACAACAAGGAGGATAACCCTGAAAATACAAGAATTTCTTTAGATTCATCCATCAACGATATCAATTTTGATAATGATCCATATTACAACTTTGATATTTTCGATCTGTATTTAGATTCCCAACCAGGATGA

mRNA sequence

ACAAAATTTCGTTCAGAGCAAAGTTTAAGATCTTACGGGTAAAAAGGTGGGATAAGTACGACTACTCCCATCTGAATGAAGATCAAATAGCGAAATGGTTGAAAACCAACGCTCATCTCTCTCTCGAGAAGAAAACCAGTACCTTCACGCAAAGAATTCAATTATGACCTTCATCGTTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAACAGTCATCCACACCATTTTCAATGACAACAAGGAGGATAACCCTGAAAATACAAGAATTTCTTTAGATTCATCCATCAACGATATCAATTTTGATAATGATCCATATTACAACTTTGATATTTTCGATCTGTATTTAGATTCCCAACCAGGATGA

Coding sequence (CDS)

ATGGTTGAAAACCAACGCTCATCTCTCTCTCGAGAAGAAAACCAGTACCTTCACGCAAAGAATTCAATTATGACCTTCATCGTTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAACAGTCATCCACACCATTTTCAATGACAACAAGGAGGATAACCCTGAAAATACAAGAATTTCTTTAGATTCATCCATCAACGATATCAATTTTGATAATGATCCATATTACAACTTTGATATTTTCGATCTGTATTTAGATTCCCAACCAGGATGA

Protein sequence

MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSINDINFDNDPYYNFDIFDLYLDSQPG

Homology

[Close]

BLAST of IVF0014069 vs. ExPASy TrEMBL
Match: A0A5D3BP68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001310 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60
          MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR
Sbjct: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60

Query: 61 ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG 93
          ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG
Sbjct: 61 ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG 92

[Close]

BLAST of IVF0014069 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 63/84 (75.00%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 9   LSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSIN 68
           L  EE+Q+L AKNSIMT I GAKSEADLQA+M+TV+H IF+DNKED+PE+TRIS DSS+N
Sbjct: 118 LREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVN 177

Query: 69  DINFDNDPYYNFDIFDLYLDSQPG 93
           +I+ DND YYNFDIFD YLDSQPG
Sbjct: 178 NIDSDNDLYYNFDIFDPYLDSQPG 201

[Close]

BLAST of IVF0014069 vs. ExPASy TrEMBL
Match: A0A5D3BG31 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00080 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60
          MVENQRSSLSREE+Q+L AKNSIMT I  AKSE DLQAVME VI+  F DNK+DN E+  
Sbjct: 1  MVENQRSSLSREEDQFLLAKNSIMTSIAEAKSEVDLQAVMEIVINNNFADNKQDNTEDIT 60

Query: 61 ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG 93
             DSSINDI+F+NDPYYNFDI DLYLD Q G
Sbjct: 61 NLSDSSINDIDFENDPYYNFDISDLYLDFQLG 92

[Close]

BLAST of IVF0014069 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-21
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 12  EENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSINDIN 71
           EE+Q+L  KNSIMTFI GAKSEADLQ VMETVIHTI++D+KE++ E+TRIS +S  NDI+
Sbjct: 62  EEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDID 121

Query: 72  FDNDPYYNFDIFDLYLDS 90
           FDNDPYYNFDI D Y DS
Sbjct: 122 FDNDPYYNFDISDPYFDS 139

[Close]

BLAST of IVF0014069 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 9   LSR-EENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSI 68
           LSR EE+Q+L AKNSIMT I GAKSEADLQAVMETV++   +DNK+D+PE+     DSS+
Sbjct: 117 LSREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSV 176

Query: 69  NDINFDNDPYYNFDIFDLYLDSQPG 93
           NDI+F NDPYYNFDI DLYLDSQ G
Sbjct: 177 NDIDFVNDPYYNFDISDLYLDSQSG 201

[Close]

BLAST of IVF0014069 vs. NCBI nr
Match: KAA0066324.1 (hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa] >TYK00955.1 hypothetical protein E5676_scaffold602G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 1.45e-58
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60
          MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR
Sbjct: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60

Query: 61 ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG 92
          ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG
Sbjct: 61 ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG 92

[Close]

BLAST of IVF0014069 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (321), Expect = 6.48e-35
Identity = 63/84 (75.00%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 9   LSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSIN 68
           L  EE+Q+L AKNSIMT I GAKSEADLQA+M+TV+H IF+DNKED+PE+TRIS DSS+N
Sbjct: 118 LREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVN 177

Query: 69  DINFDNDPYYNFDIFDLYLDSQPG 92
           +I+ DND YYNFDIFD YLDSQPG
Sbjct: 178 NIDSDNDLYYNFDIFDPYLDSQPG 201

[Close]

BLAST of IVF0014069 vs. NCBI nr
Match: KAA0052120.1 (hypothetical protein E6C27_scaffold578G001120 [Cucumis melo var. makuwa] >TYJ98077.1 hypothetical protein E5676_scaffold565G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 1.28e-34
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60
          MVENQRSSLSREE+Q+L AKNSIMT I  AKSE DLQAVME VI+  F DNK+DN E+  
Sbjct: 1  MVENQRSSLSREEDQFLLAKNSIMTSIAEAKSEVDLQAVMEIVINNNFADNKQDNTEDIT 60

Query: 61 ISLDSSINDINFDNDPYYNFDIFDLYLDSQPG 92
             DSSINDI+F+NDPYYNFDI DLYLD Q G
Sbjct: 61 NLSDSSINDIDFENDPYYNFDISDLYLDFQLG 92

[Close]

BLAST of IVF0014069 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 1.01e-29
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 12  EENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSINDIN 71
           EE+Q+L  KNSIMTFI GAKSEADLQ VMETVIHTI++D+KE++ E+TRIS +S  NDI+
Sbjct: 62  EEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDID 121

Query: 72  FDNDPYYNFDIFDLYLDS 89
           FDNDPYYNFDI D Y DS
Sbjct: 122 FDNDPYYNFDISDPYFDS 139

[Close]

BLAST of IVF0014069 vs. NCBI nr
Match: TYK06665.1 (hypothetical protein E5676_scaffold453G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 6.45e-29
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTR 60
          MV+NQ SSLSREE+Q+L AKNS MT IVGAKS+ DLQA+MET ++   NDNK+D PE+  
Sbjct: 1  MVQNQCSSLSREEDQFLLAKNSTMTSIVGAKSKVDLQAIMETNVNNTSNDNKQDEPEDIA 60

Query: 61 ISLDSSINDINFDNDPYYNFDIFD 84
             +S +NDI+FDNDPYYNFDIFD
Sbjct: 61 NLSNSFVNDIDFDNDPYYNFDIFD 84

The following BLAST results are available for this feature:

BLAST of IVF0014069 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014069 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BP68	1.3e-42	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UEA0	1.1e-25	75.00	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3BG31	2.1e-24	72.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KXT5	2.8e-21	73.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1	[more]
A0A5A7U8X4	1.4e-20	70.59	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0014069 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066324.1	1.45e-58	100.00	hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa] >TYK0095...	[more]
KAA0051819.1	6.48e-35	75.00	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp...	[more]
KAA0052120.1	1.28e-34	72.83	hypothetical protein E6C27_scaffold578G001120 [Cucumis melo var. makuwa] >TYJ980...	[more]
KGN53659.1	1.01e-29	73.08	hypothetical protein Csa_014527 [Cucumis sativus]	[more]
TYK06665.1	6.45e-29	66.67	hypothetical protein E5676_scaffold453G001500 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014069 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014069.1	IVF0014069.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity