IVF0014037 (gene) Melon (IVF77) v1

Overview


Name	IVF0014037
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 21759412 .. 21759867 (-)
RNA-Seq Expression	IVF0014037
Synteny	IVF0014037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCTTGTGTTATCTGGAAAGAACAAAGTTGGCTTTATCACCAACTCAATCAAGAAACCTTCAGAAGGTAATCTCCTCTCAGCTTGGAAATGCAACAGTGATGTGATAGCCTCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACCATGGAAGCGTAAAGGAAGTATGGGATGAATTGAAAGAAATATATAGGCAGTCCAATGGACCTCACATATACCAGTTGCGAAGGGACTTGGTAACCGCTACACAAGGAAGCCTCTCGATTGAAATGTACTATGCAAAAATTACCACTATATGGCAAGAACTTGTTGAATATCGTCCTATGAATGTGTGCACTTGTGAAGGGTCAAAGAAAATGATTGATTTTTTTAATGCAACGTTTGTAATGACCTTTCTTATGGGATTAAATGAATCTTATTCTCAAATTAGAGCTTAA

mRNA sequence

ATGACGCTTGTGTTATCTGGAAAGAACAAAGTTGGCTTTATCACCAACTCAATCAAGAAACCTTCAGAAGGTAATCTCCTCTCAGCTTGGAAATGCAACAGTGATGTGATAGCCTCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACCATGGAAGCGTAAAGGAAGTATGGGATGAATTGAAAGAAATATATAGGCAGTCCAATGGACCTCACATATACCAGTTGCGAAGGGACTTGGTAACCGCTACACAAGGAAGCCTCTCGATTGAAATGTACTATGCAAAAATTACCACTATATGGCAAGAACTTGTTGAATATCGTCCTATGAATGTGTGCACTTGTGAAGGGTCAAAGAAAATGATTGATTTTTTTAATGCAACGTTTGTAATGACCTTTCTTATGGGATTAAATGAATCTTATTCTCAAATTAGAGCTTAA

Coding sequence (CDS)

ATGACGCTTGTGTTATCTGGAAAGAACAAAGTTGGCTTTATCACCAACTCAATCAAGAAACCTTCAGAAGGTAATCTCCTCTCAGCTTGGAAATGCAACAGTGATGTGATAGCCTCTTGGATTATCAACTCCATTTCGAAAGAAATAGCGGCAAGCCTTGTTTACCATGGAAGCGTAAAGGAAGTATGGGATGAATTGAAAGAAATATATAGGCAGTCCAATGGACCTCACATATACCAGTTGCGAAGGGACTTGGTAACCGCTACACAAGGAAGCCTCTCGATTGAAATGTACTATGCAAAAATTACCACTATATGGCAAGAACTTGTTGAATATCGTCCTATGAATGTGTGCACTTGTGAAGGGTCAAAGAAAATGATTGATTTTTTTAATGCAACGTTTGTAATGACCTTTCTTATGGGATTAAATGAATCTTATTCTCAAATTAGAGCTTAA

Protein sequence

MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVMTFLMGLNESYSQIRA

Homology

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BLAST of IVF0014037 vs. ExPASy TrEMBL
Match: A0A5D3D9Z1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00110 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.5e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK
Sbjct: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN 117
           EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN
Sbjct: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN 116

[Close]

BLAST of IVF0014037 vs. ExPASy TrEMBL
Match: A0A6J1CXR2 (uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015239 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.9e-52
Identity = 98/151 (64.90%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           M + LSGKNKVGFI  +IKKP+ GNLL+AWKCN+D+I SWIINS+SKEIAAS++Y GS K
Sbjct: 58  MLIALSGKNKVGFIDGTIKKPN-GNLLAAWKCNNDIITSWIINSVSKEIAASIIYTGSAK 117

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTC 120
           ++WDELKE ++QS+ P I+QLR++LVT  QG+LSIE YY K+ T+WQEL +YRP   CTC
Sbjct: 118 DIWDELKERFQQSDAPRIFQLRKELVTTIQGTLSIEAYYTKLKTVWQELTDYRPTIDCTC 177

Query: 121 EGSKKMIDFFNATFVMTFLMGLNESYSQIRA 152
            G K + +FF + +VMTFLMGLNESY++IRA
Sbjct: 178 SGLKSLSEFFQSEYVMTFLMGLNESYAKIRA 207

[Close]

BLAST of IVF0014037 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.8e-49
Identity = 90/151 (59.60%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           M + +SG+NK GFIT  I+KPS+G LL AW CN+D++ASWI+NS+SKEIAAS++Y GS+K
Sbjct: 59  MLMAISGRNKAGFITGKIQKPSDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIK 118

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTC 120
           E+WDEL++ ++QSNGP IYQLR++ VT  QG+L+IE YY K+ TIWQ L EYR  N CTC
Sbjct: 119 EIWDELRQRFKQSNGPSIYQLRKEFVTLRQGNLTIETYYTKLKTIWQNLNEYRFTNDCTC 178

Query: 121 EGSKKMIDFFNATFVMTFLMGLNESYSQIRA 152
            G K  ID   + ++M FLMGLN+SY+ +RA
Sbjct: 179 GGLKPFIDHLESEYIMAFLMGLNDSYAAVRA 209

[Close]

BLAST of IVF0014037 vs. ExPASy TrEMBL
Match: A0A5A7T2X0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00050 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 15  TNSIKKP---SEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYR 74
           TN +  P   S+G+LLSAW+CN+DVIASWIINSISKEIAASLVY G VKE+WD+LKE YR
Sbjct: 43  TNLVSTPLAGSKGSLLSAWRCNNDVIASWIINSISKEIAASLVYGGIVKEIWDDLKERYR 102

Query: 75  QSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN 117
           QSNGPHIY+LR+DLVT TQG+L +E+YYAKITTIWQELVEY+ MN
Sbjct: 103 QSNGPHIYRLRKDLVTTTQGNLPVEVYYAKITTIWQELVEYQWMN 147

[Close]

BLAST of IVF0014037 vs. ExPASy TrEMBL
Match: A0A6J1DPT8 (uncharacterized protein LOC111022420 OS=Momordica charantia OX=3673 GN=LOC111022420 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.0e-36
Identity = 75/135 (55.56%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 17  SIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKEIYRQSNGP 76
           +I KP + N+LSAWKCN+DVI  WI+NS+S++IAASLVY  S  ++W+EL++ ++QSNGP
Sbjct: 21  TIDKPKD-NMLSAWKCNNDVIILWIMNSVSRDIAASLVYSDSASDIWNELRDRFQQSNGP 80

Query: 77  HIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTCEGSKKMIDFFNATFVM 136
            IYQLR++ VT       IE YY K+ T+WQEL EY   N CTC G K++++ FN+ +VM
Sbjct: 81  RIYQLRKEFVT-------IEAYYTKLKTVWQELSEYHLSNACTCGGLKQVLNHFNSEYVM 140

Query: 137 TFLMGLNESYSQIRA 152
            FLMGLNESY+ +RA
Sbjct: 141 MFLMGLNESYAGVRA 147

[Close]

BLAST of IVF0014037 vs. NCBI nr
Match: KAA0054564.1 (uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa] >TYK20391.1 uncharacterized protein E5676_scaffold519G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (604), Expect = 6.30e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK
Sbjct: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN 116
           EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN
Sbjct: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMN 116

[Close]

BLAST of IVF0014037 vs. NCBI nr
Match: XP_038894602.1 (uncharacterized protein LOC120083117 [Benincasa hispida])

HSP 1 Score: 210 bits (535), Expect = 5.18e-67
Identity = 97/143 (67.83%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 8   KNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELK 67
           + +  F+  +IKKP EGNLL AW+CN+DVI SWIINSISKEIA SLVY G+VK++WDELK
Sbjct: 12  QEQANFVIGTIKKPIEGNLLLAWQCNNDVITSWIINSISKEIAVSLVYTGNVKDLWDELK 71

Query: 68  EIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTCEGSKKMI 127
           E YRQSNGPH+YQLR+DLVT  Q +LSIE YYAK TTIW+ LVEY P++ CTC G KKM+
Sbjct: 72  ERYRQSNGPHVYQLRKDLVTTVQSTLSIEAYYAKFTTIWKALVEYCPIDECTCGGMKKML 131

Query: 128 DFFNATFVMTFLMGLNESYSQIR 150
           +F    FVM FLMGLN+S++QIR
Sbjct: 132 EFLIVEFVMIFLMGLNDSFAQIR 154

[Close]

BLAST of IVF0014037 vs. NCBI nr
Match: XP_022145891.1 (uncharacterized protein LOC111015239 [Momordica charantia])

HSP 1 Score: 215 bits (547), Expect = 9.81e-66
Identity = 98/151 (64.90%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           M + LSGKNKVGFI  +IKKP+ GNLL+AWKCN+D+I SWIINS+SKEIAAS++Y GS K
Sbjct: 58  MLIALSGKNKVGFIDGTIKKPN-GNLLAAWKCNNDIITSWIINSVSKEIAASIIYTGSAK 117

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTC 120
           ++WDELKE ++QS+ P I+QLR++LVT  QG+LSIE YY K+ T+WQEL +YRP   CTC
Sbjct: 118 DIWDELKERFQQSDAPRIFQLRKELVTTIQGTLSIEAYYTKLKTVWQELTDYRPTIDCTC 177

Query: 121 EGSKKMIDFFNATFVMTFLMGLNESYSQIRA 151
            G K + +FF + +VMTFLMGLNESY++IRA
Sbjct: 178 SGLKSLSEFFQSEYVMTFLMGLNESYAKIRA 207

[Close]

BLAST of IVF0014037 vs. NCBI nr
Match: XP_038888312.1 (uncharacterized protein LOC120078158 [Benincasa hispida])

HSP 1 Score: 204 bits (518), Expect = 7.30e-65
Identity = 93/120 (77.50%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           M L LSGKNK+GFIT +I+KP EG+L SAW+CN+DVI SWIINS+SKEIA SLVY GSVK
Sbjct: 5   MKLTLSGKNKIGFITGTIEKPLEGSLQSAWRCNNDVITSWIINSVSKEIAVSLVYRGSVK 64

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTC 120
           E+WDELKE Y QSNGPHIYQLR+DL T TQG+LS+E+YYAKITTIWQELVEYRP + CTC
Sbjct: 65  EIWDELKERYHQSNGPHIYQLRKDLATTTQGNLSVEVYYAKITTIWQELVEYRPTDKCTC 124

[Close]

BLAST of IVF0014037 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 7.04e-59
Identity = 90/151 (59.60%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 1   MTLVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVK 60
           M + +SG+NK GFIT  I+KPS+G LL AW CN+D++ASWI+NS+SKEIAAS++Y GS+K
Sbjct: 59  MLMAISGRNKAGFITGKIQKPSDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIK 118

Query: 61  EVWDELKEIYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTC 120
           E+WDEL++ ++QSNGP IYQLR++ VT  QG+L+IE YY K+ TIWQ L EYR  N CTC
Sbjct: 119 EIWDELRQRFKQSNGPSIYQLRKEFVTLRQGNLTIETYYTKLKTIWQNLNEYRFTNDCTC 178

Query: 121 EGSKKMIDFFNATFVMTFLMGLNESYSQIRA 151
            G K  ID   + ++M FLMGLN+SY+ +RA
Sbjct: 179 GGLKPFIDHLESEYIMAFLMGLNDSYAAVRA 209

[Close]

BLAST of IVF0014037 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 10  KVGFITNSIKKPSE-GNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEVWDELKE 69
           K GFI  ++ KP     L   W+  + ++  W++NS++ ++  S++Y  +  ++W++L+ 
Sbjct: 58  KFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRR 117

Query: 70  IYRQSNGPHIYQLRRDLVTATQGSLSIEMYYAKITTIWQELVEYRPMNVCTCEG 123
           ++       IYQLRR L T  QG  S+E Y+ K++ +W EL EY P+  C C G
Sbjct: 118 VFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGG 171

The following BLAST results are available for this feature:

BLAST of IVF0014037 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014037 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9Z1	9.5e-59	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1CXR2	3.9e-52	64.90	uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5A7VE66	6.8e-49	59.60	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7T2X0	1.2e-37	76.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6J1DPT8	3.0e-36	55.56	uncharacterized protein LOC111022420 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of IVF0014037 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054564.1	6.30e-77	100.00	uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_038894602.1	5.18e-67	67.83	uncharacterized protein LOC120083117 [Benincasa hispida]	[more]
XP_022145891.1	9.81e-66	64.90	uncharacterized protein LOC111015239 [Momordica charantia]	[more]
XP_038888312.1	7.30e-65	77.50	uncharacterized protein LOC120078158 [Benincasa hispida]	[more]
KAA0065480.1	7.04e-59	59.60	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]

BLAST of IVF0014037 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	2.0e-16	33.33	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 35..144 e-value: 2.3E-10 score: 40.6
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 1..142
None	No IPR available	PANTHER	PTHR37610:SF49	SUBFAMILY NOT NAMED	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014037.2	IVF0014037.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding