IVF0014026 (gene) Melon (IVF77) v1

Overview


Name	IVF0014026
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag protease polyprotein
Location	chr04: 8840085 .. 8840294 (+)
RNA-Seq Expression	IVF0014026
Synteny	IVF0014026

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAGAGGCCTTATTGTGGTACTTGTGGAAAGTACCATTTAGGTCATTGTTTGTCTAGGACCAAGGCTCGCTTCAAGTGCGAGCAAGAGGAGCACAAATTGACGGATGCCCTAATGGGTCTACTAGGATTGTTTAAACTCAAGGAGCGAGTACATCCCAGCAAGGGAGAGTCTTTGCCACTACTCGACGAGAGATCAAGAGAGTAA

mRNA sequence

ATGAGAGAGAGGCCTTATTGTGGTACTTGTGGAAAGTACCATTTAGGTCATTGTTTGTCTAGGACCAAGGCTCGCTTCAAGTGCGAGCAAGAGGAGCACAAATTGACGGATGCCCTAATGGGTCTACTAGGATTGTTTAAACTCAAGGAGCGAGTACATCCCAGCAAGGGAGAGTCTTTGCCACTACTCGACGAGAGATCAAGAGAGTAA

Coding sequence (CDS)

ATGAGAGAGAGGCCTTATTGTGGTACTTGTGGAAAGTACCATTTAGGTCATTGTTTGTCTAGGACCAAGGCTCGCTTCAAGTGCGAGCAAGAGGAGCACAAATTGACGGATGCCCTAATGGGTCTACTAGGATTGTTTAAACTCAAGGAGCGAGTACATCCCAGCAAGGGAGAGTCTTTGCCACTACTCGACGAGAGATCAAGAGAGTAA

Protein sequence

MRERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGLFKLKERVHPSKGESLPLLDERSRE

Homology

[Close]

BLAST of IVF0014026 vs. ExPASy TrEMBL
Match: A0A5A7TBM2 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00600 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.4e-09
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1  MRERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGLFKLKERVHPS----- 60
          MRERP+C TCGKYHL  CL  T+A FKC+QE H     L G +    ++ +V P+     
Sbjct: 21 MRERPFCNTCGKYHLRCCLFGTRADFKCKQEGHTTDRCLSGFM---VIRAQVLPNVMGTD 80

Query: 61 -KGESLPLLDERSRE 70
             ESLPL+D+RSRE
Sbjct: 81 RNEESLPLIDKRSRE 92

[Close]

BLAST of IVF0014026 vs. ExPASy TrEMBL
Match: A0A5A7UBP4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001190 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 1   MRERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLG 45
           +R +P C TCGK+HLG CL RT+  FKC QEEH      M L G
Sbjct: 232 VRGKPLCTTCGKHHLGRCLFRTRICFKCRQEEHTADRCPMRLTG 275

[Close]

BLAST of IVF0014026 vs. ExPASy TrEMBL
Match: A0A5D3CVS1 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00760 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 2   RERPYCGTCGKYHLGHCLSRTKARFKCEQEEH 34
           RE+P C TCGK+HLGHCL  T+  FKC Q+EH
Sbjct: 99  REKPLCTTCGKHHLGHCLFGTRICFKCRQDEH 130

[Close]

BLAST of IVF0014026 vs. ExPASy TrEMBL
Match: A0A5A7SUR0 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00180 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 2   RERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGLFKLKE 51
           R +P C TCGK+HLG CL  T+  F C QEEH      M L G+ K+++
Sbjct: 220 RGKPLCTTCGKHHLGRCLFGTRTCFNCRQEEHTTNKCPMRLTGVHKIRK 268

[Close]

BLAST of IVF0014026 vs. ExPASy TrEMBL
Match: A0A5D3DDC1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00030 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 2   RERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGLFKLKERVHPSKGE 59
           R +P+C  CGK+HL HCL  T+  FKC QE H     LM L+G  + +    P +G+
Sbjct: 232 RGKPFCTICGKHHLSHCLFGTRTCFKCRQEGHTADKCLMRLIGSAQNQGAGAPHQGK 288

[Close]

BLAST of IVF0014026 vs. NCBI nr
Match: KAA0040473.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYK23486.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.14e-13
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1  MRERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGLFKLKERVHPS----- 60
          MRERP+C TCGKYHL  CL  T+A FKC+QE H     L G +    ++ +V P+     
Sbjct: 21 MRERPFCNTCGKYHLRCCLFGTRADFKCKQEGHTTDRCLSGFM---VIRAQVLPNVMGTD 80

Query: 61 -KGESLPLLDERSRE 69
             ESLPL+D+RSRE
Sbjct: 81 RNEESLPLIDKRSRE 92

[Close]

BLAST of IVF0014026 vs. NCBI nr
Match: KAA0062111.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 4.14e-07
Identity = 24/44 (54.55%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 2  RERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGL 45
          RE+P C TCGKYHLG CL RT+  FK  QE H      M L G+
Sbjct: 48 REKPLCATCGKYHLGRCLFRTRTCFKRSQEGHTADRCPMRLTGV 91

[Close]

BLAST of IVF0014026 vs. NCBI nr
Match: KAA0032722.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ98753.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 5.25e-07
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 1   MRERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGL 45
           +R +P C TCGK+HLG CL  T+  FKC+QE H      M L+G+
Sbjct: 57  VRGKPLCTTCGKHHLGRCLFGTRTCFKCKQERHTTNRCPMRLIGV 101

[Close]

BLAST of IVF0014026 vs. NCBI nr
Match: KAA0053303.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 8.73e-07
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 1   MRERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLG 44
           +R +P C TCGK+HLG CL RT+  FKC QEEH      M L G
Sbjct: 232 VRGKPLCTTCGKHHLGRCLFRTRICFKCRQEEHTADRCPMRLTG 275

[Close]

BLAST of IVF0014026 vs. NCBI nr
Match: KAA0033201.1 (gag-protease polyprotein [Cucumis melo var. makuwa] >TYK07501.1 gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 9.42e-07
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 2   RERPYCGTCGKYHLGHCLSRTKARFKCEQEEHKLTDALMGLLGLFKLKE 50
           R +P C TCGK+HLG CL  T+  F C QEEH      M L G+ K+++
Sbjct: 220 RGKPLCTTCGKHHLGRCLFGTRTCFNCRQEEHTTNKCPMRLTGVHKIRK 268

The following BLAST results are available for this feature:

BLAST of IVF0014026 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014026 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBM2	5.4e-09	49.33	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UBP4	1.1e-04	54.55	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5D3CVS1	1.8e-04	65.63	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SUR0	1.8e-04	46.94	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3DDC1	2.3e-04	42.11	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of IVF0014026 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040473.1	3.14e-13	49.33	gag protease polyprotein [Cucumis melo var. makuwa] >TYK23486.1 gag protease pol...	[more]
KAA0062111.1	4.14e-07	54.55	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032722.1	5.25e-07	48.89	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ98753.1 gag protease pol...	[more]
KAA0053303.1	8.73e-07	54.55	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033201.1	9.42e-07	46.94	gag-protease polyprotein [Cucumis melo var. makuwa] >TYK07501.1 gag-protease pol...	[more]

BLAST of IVF0014026 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014026.1	IVF0014026.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016787	hydrolase activity