Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGTCTCGGGTCGGGTCAGCTTGGAACCGGGGCGAGCTCAACGGCAACTTCGGCGTTCGACGACGGGGTGAGTCGCGGCTGGGTGGAATCCGACAGCTGGTTCTGCTTTCACGCGGCGGAGGACGACGGCTTGACGGCGGAGGACGATTTGAAGCCGAGAGGAGATCCGAAATGGATGGGGAGGCCGCGGCGGACGAACACGATGAAGCTGACGACGCTGGAGGCGGAACAGGAGACGGAGACGGAGATGTGCGCGAACGGAAGGGAAAAGAGAAAAGAAAGAAAACGATGGGGGCTGCGATGA mRNA sequence ATGGGTCTCGGGTCGGGTCAGCTTGGAACCGGGGCGAGCTCAACGGCAACTTCGGCGTTCGACGACGGGGTGAGTCGCGGCTGGGTGGAATCCGACAGCTGGTTCTGCTTTCACGCGGCGGAGGACGACGGCTTGACGGCGGAGGACGATTTGAAGCCGAGAGGAGATCCGAAATGGATGGGGAGGCCGCGGCGGACGAACACGATGAAGCTGACGACGCTGGAGGCGGAACAGGAGACGGAGACGGAGATGTGCGCGAACGGAAGGGAAAAGAGAAAAGAAAGAAAACGATGGGGGCTGCGATGA Coding sequence (CDS) ATGGGTCTCGGGTCGGGTCAGCTTGGAACCGGGGCGAGCTCAACGGCAACTTCGGCGTTCGACGACGGGGTGAGTCGCGGCTGGGTGGAATCCGACAGCTGGTTCTGCTTTCACGCGGCGGAGGACGACGGCTTGACGGCGGAGGACGATTTGAAGCCGAGAGGAGATCCGAAATGGATGGGGAGGCCGCGGCGGACGAACACGATGAAGCTGACGACGCTGGAGGCGGAACAGGAGACGGAGACGGAGATGTGCGCGAACGGAAGGGAAAAGAGAAAAGAAAGAAAACGATGGGGGCTGCGATGA Protein sequence MGLGSGQLGTGASSTATSAFDDGVSRGWVESDSWFCFHAAEDDGLTAEDDLKPRGDPKWMGRPRRTNTMKLTTLEAEQETETEMCANGREKRKERKRWGLR
Homology
BLAST of IVF0013963 vs. NCBI nr
Match: KAA0063710.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa]) HSP 1 Score: 50.8 bits (120), Expect = 3.54e-05 Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 0
Query: 5 SGQLGTGASSTATSAFDDGVSRGWVESDSWFCFHAAEDDGLTAE 48
SG+L G + + G+ RGWVESD FCFHAAEDDGLTA+
Sbjct: 85 SGRLENGNLNDSFGRSTTGMCRGWVESDDRFCFHAAEDDGLTAD 128
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0063710.1 | 3.54e-05 | 56.82 | NBS-LRR type resistance protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 75..101 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 46..63 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..23 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 7..21 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 46..65 |
Relationships
The following mRNA feature(s) are a part of this gene:
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