IVF0013958 (gene) Melon (IVF77) v1

Overview


Name	IVF0013958
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr09: 17005448 .. 17006468 (+)
RNA-Seq Expression	IVF0013958
Synteny	IVF0013958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTCACACAACGTTAACAATTTACATTTAGTAAACAATTTTTAAATTAGTACTCATACGTCATATTTTTTTTCTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCGGTCGGTTCGCTGAGACATTGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATGTGGCGCTCGACCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAATTGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCGGTCGGTTCGCTGAGACATTGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAATGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGCACCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTCGAATGTTTAATGGAGCTAGTGTCAATGGGGGGCTGGAAATCAGATAATGGTACATTTCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTTAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGCATTGTTGCGGAGAAGGAATTATTCGATAATTGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAACCATTCCCGTATTACGACGAGCTTACATATGTATTTGGTCGGGATAGGGCGACCGGTCGGTTCGCTGAGACATTGCGGACGTGGGGTCTAACGAGCCAGGTGGCGGATATGACAGATTTGATATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAATGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Protein sequence

MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVADMTDLIWGMETRTSRPCTARELTSRRTMYVHPDLLALQMVGPDQVDRRGRGEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

Homology

[Close]

BLAST of IVF0013958 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.0e-119
Identity = 235/311 (75.56%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.0e-119
Identity = 235/311 (75.56%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.0e-119
Identity = 235/311 (75.56%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.3e-119
Identity = 234/311 (75.24%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
            +WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 3.0e-119
Identity = 233/306 (76.14%), Postives = 239/306 (78.10%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTARE-----LTSRRTMYVHPDL-LALQMVGPDQVDRRGR--GEWPA 240
                   R SRP  A +       S+R      D  L    V  DQ + + R   +WPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 279
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of IVF0013958 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 434 bits (1117), Expect = 3.63e-151
Identity = 235/311 (75.56%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 434 bits (1117), Expect = 3.63e-151
Identity = 235/311 (75.56%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433 bits (1114), Expect = 1.04e-150
Identity = 234/311 (75.24%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            +WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 434 bits (1117), Expect = 1.39e-150
Identity = 235/311 (75.56%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433 bits (1113), Expect = 1.48e-150
Identity = 234/311 (75.24%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETLRTWGLTSQVA--DMTDLIWGME--------- 180
           LLNKPFPYYDELTYVFGRDRATGRFAET    G        D  D+  G E         
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSPVYSQG 180

Query: 181 -------TRTSRPCTA-----------RELTSRRTMYVHPDLLALQMVGPDQVDRRGR-- 240
                   R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0013958 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-10
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 0


Query: 12  WTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAE-KLPGCQVRATTVIDCR 71
           W+ EE   LV+ L+E ++   W+  NGT     L    + M E     C+ +       R
Sbjct: 17  WSPEETKLLVQLLVEGIN-NNWRDSNGTI--SKLTVETKFMPEINKEFCRSKNYNHYLSR 76

Query: 72  IKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKGLLNKPFPYYD 131
           +K LK  +Q+  +++    SGFGW+   K   A  E++ ++  +HP  K L    F ++D
Sbjct: 77  MKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFD 136

Query: 132 ELTYVFGRDRATGRFAETL--RTWGLTSQVAD 159
           EL  +FG   ATG+ A  L   T GLT +  +
Sbjct: 137 ELQIIFGEGVATGKNAIGLCDSTDGLTYRAGE 164

[Close]

BLAST of IVF0013958 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06
Identity = 35/137 (25.55%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 9   RHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID 68
           R  WT   +  L++ L+E V+ G       TF      ++V     K  G Q     V+ 
Sbjct: 324 RIFWTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQ-HNKDVLK 383

Query: 69  CRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKGLLNKPFPY 128
            R K L+R +  I  +     +GF W+     ++A+ ++++ +  +HP A+    K  P 
Sbjct: 384 NRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPS 443

Query: 129 YDELTYVFGRDRATGRF 144
           Y  L ++FG++ + GR+
Sbjct: 444 YPNLCFIFGKETSDGRY 454

The following BLAST results are available for this feature:

BLAST of IVF0013958 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRV1	1.0e-119	75.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.0e-119	75.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRU1	1.0e-119	75.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCN9	2.3e-119	75.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CWL2	3.0e-119	76.14	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0013958 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033744.1	3.63e-151	75.56	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]
TYK21395.1	3.63e-151	75.56	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]
TYJ96194.1	1.04e-150	75.24	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0032766.1	1.39e-150	75.56	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038975.1	1.48e-150	75.24	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013958 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	8.7e-10	30.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	2.0e-06	25.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..110 e-value: 1.7E-7 score: 32.1
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..146
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013958.2	IVF0013958.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane