IVF0013948 (gene) Melon (IVF77) v1

Overview


Name	IVF0013948
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Defensin-like protein
Location	chr05: 14934713 .. 14935157 (+)
RNA-Seq Expression	IVF0013948
Synteny	IVF0013948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCCTCTCCTTCTCGGCCATTCTTCTTGCACTTTTACTCATTTTCAGTGGTACTCCCTACTTAGCTTTTATTATTTATTTTAATTTCTCGTGTCATGATCACCTTGTATTTTGATTTATTTTTTCCATTTTAATTACTTATTTGAGAAATTCTACACGATGTAAGTAATTGATATTCTACGTATTAGTTTCAACTTGTGTTTACCTAAGTATTGGAGATTGAGGTTGGGTGGTCATGGATTTTAATGAATGCAGGAGAAACTATGATGAAAAGTGTTGAAGGTGTAGGAGGACTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGTCGAGTGTATAAGTGGCTGCAAAGCCCTATTTGGAAAAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGA

mRNA sequence

ATGAAGTCCCTCTCCTTCTCGGCCATTCTTCTTGCACTTTTACTCATTTTCAGTGGAGAAACTATGATGAAAAGTGTTGAAGGTGTAGGAGGACTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGTCGAGTGTATAAGTGGCTGCAAAGCCCTATTTGGAAAAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGA

Coding sequence (CDS)

ATGAAGTCCCTCTCCTTCTCGGCCATTCTTCTTGCACTTTTACTCATTTTCAGTGGAGAAACTATGATGAAAAGTGTTGAAGGTGTAGGAGGACTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGTCGAGTGTATAAGTGGCTGCAAAGCCCTATTTGGAAAAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGA

Protein sequence

MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAMGLCFFFRTPSDTCLCRYPC

Homology

[Close]

BLAST of IVF0013948 vs. ExPASy TrEMBL
Match: A0A5A7VA38 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7126G00120 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM
Sbjct: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. ExPASy TrEMBL
Match: A0A5A7V978 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00660 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.4e-37
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+SFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKD ECISGCKALFGKGAM
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. ExPASy TrEMBL
Match: A0A5A7V7B1 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3861G00090 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+SFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKD EC+SGCKALFGKGAM
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. ExPASy TrEMBL
Match: A0A5A7TBW2 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00120 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+S SAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVEC+SGCKALFGKGAM
Sbjct: 1  MKSVSISAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. ExPASy TrEMBL
Match: A0A5D3D8B4 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3861G00070 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-36
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+SFSAILLALLLIFSGETM KSVEGVGGLCEKALHGGGCKD ECISGCKALFGKGAM
Sbjct: 1  MKSVSFSAILLALLLIFSGETMTKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. NCBI nr
Match: KAA0062521.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 3.45e-51
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM
Sbjct: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. NCBI nr
Match: KAA0062251.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (410), Expect = 2.84e-50
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+SFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKD ECISGCKALFGKGAM
Sbjct: 1  MKSISFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. NCBI nr
Match: KAA0061621.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 1.16e-49
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+SFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKD EC+SGCKALFGKGAM
Sbjct: 1  MKSVSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. NCBI nr
Match: KAA0040398.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 2.55e-49
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+S SAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVEC+SGCKALFGKGAM
Sbjct: 1  MKSVSISAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECMSGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of IVF0013948 vs. NCBI nr
Match: TYK19753.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (403), Expect = 3.32e-49
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MKSLSFSAILLALLLIFSGETMMKSVEGVGGLCEKALHGGGCKDVECISGCKALFGKGAM 60
          MKS+SFSAILLALLLIFSGETM KSVEGVGGLCEKALHGGGCKD ECISGCKALFGKGAM
Sbjct: 1  MKSVSFSAILLALLLIFSGETMTKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 79
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

The following BLAST results are available for this feature:

BLAST of IVF0013948 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VA38	1.1e-37	100.00	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold71...	[more]
A0A5A7V978	5.4e-37	97.47	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A5A7V7B1	1.6e-36	96.20	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7TBW2	2.7e-36	96.20	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5D3D8B4	3.5e-36	96.20	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]

BLAST of IVF0013948 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062521.1	3.45e-51	100.00	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0062251.1	2.84e-50	97.47	Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like prote...	[more]
KAA0061621.1	1.16e-49	96.20	Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like prote...	[more]
KAA0040398.1	2.55e-49	96.20	Defensin-like protein [Cucumis melo var. makuwa]	[more]
TYK19753.1	3.32e-49	96.20	Defensin-like protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013948 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 32..79 e-value: 2.9E-7 score: 30.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013948.1	IVF0013948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism