IVF0013947 (gene) Melon (IVF77) v1

Overview


Name	IVF0013947
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	S-protein homolog
Location	chr04: 11442658 .. 11442843 (+)
RNA-Seq Expression	IVF0013947
Synteny	IVF0013947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAACGGTCAAAATCATGTGTCATTAGAAGTGTTTTGGCCAGAATCAGCATCTAACCCCTATCTTGCTTATAGATGCAGTGATAATGTGTGCTATTGGTCAGCACGAAACGATGGAATTTACATCTATAATGTTCCTGAACATAAGTTTGATCTTCACGCTAAATGGTTGCCTGGTCCGTAG

mRNA sequence

ATGACCAACGGTCAAAATCATGTGTCATTAGAAGTGTTTTGGCCAGAATCAGCATCTAACCCCTATCTTGCTTATAGATGCAGTGATAATGTGTGCTATTGGTCAGCACGAAACGATGGAATTTACATCTATAATGTTCCTGAACATAAGTTTGATCTTCACGCTAAATGGTTGCCTGGTCCGTAG

Coding sequence (CDS)

ATGACCAACGGTCAAAATCATGTGTCATTAGAAGTGTTTTGGCCAGAATCAGCATCTAACCCCTATCTTGCTTATAGATGCAGTGATAATGTGTGCTATTGGTCAGCACGAAACGATGGAATTTACATCTATAATGTTCCTGAACATAAGTTTGATCTTCACGCTAAATGGTTGCCTGGTCCGTAG

Protein sequence

MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPGP

Homology

[Close]

BLAST of IVF0013947 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-04
Identity = 20/60 (33.33%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M+    H++++VFW     +  L +RC    C W+A+NDG+Y++N    +  L  KW  G
Sbjct: 95  MSKDDGHMNVKVFW----DDVILFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWKSG 150

[Close]

BLAST of IVF0013947 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 7.6e-04
Identity = 19/60 (31.67%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M     H+++ VFW     +  L +RC    C W+A+ DG+Y++N    +  L  KW  G
Sbjct: 95  MNKDNGHMNVNVFW----DDVILFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEVG 150

[Close]

BLAST of IVF0013947 vs. ExPASy TrEMBL
Match: A0A0A0L8P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623980 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.7e-25
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
          M+N  NHVSLEVFWPE+AS PYL+YRC DNVCYWSARNDGIYIYNVPE+KF+LH KWLPG
Sbjct: 1  MSNDHNHVSLEVFWPEAASKPYLSYRCRDNVCYWSARNDGIYIYNVPENKFELHTKWLPG 60

[Close]

BLAST of IVF0013947 vs. ExPASy TrEMBL
Match: A0A5E4EKH7 (S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 3   NGQNHVSLEVFWPESAS-NPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 61
           N   H + +VFW E  S + +L YRC+   C+W A++DGIYI N PE + +L  +W PG
Sbjct: 103 NNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQWEPG 161

[Close]

BLAST of IVF0013947 vs. ExPASy TrEMBL
Match: M5VN50 (S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_ppa024219mg PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 3   NGQNHVSLEVFWPESAS-NPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 61
           N   H + +VFW E  S + +L YRC+   C+W A++DGIYI N PE + +L  +W PG
Sbjct: 49  NNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQWEPG 107

[Close]

BLAST of IVF0013947 vs. ExPASy TrEMBL
Match: A0A251N105 (S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_8G208400 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 3   NGQNHVSLEVFWPESAS-NPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 61
           N   H + +VFW E  S + +L YRC+   C+W A++DGIYI N PE + +L  +W PG
Sbjct: 103 NNHQHANFQVFWHEDESKSSWLHYRCNWKECFWVAKDDGIYIRNTPEGRDELQHQWEPG 161

[Close]

BLAST of IVF0013947 vs. ExPASy TrEMBL
Match: A0A6J5Y6Z2 (S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51616 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.6e-07
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKW 58
           M+ GQNH +L+VFW E   + +L YRC+   C W A++DGIYI  +PE++ +   KW
Sbjct: 89  MSTGQNHAALDVFWVE-GEHIWLQYRCNWKDCIWIAKDDGIYIKIIPENRDEFSHKW 144

[Close]

BLAST of IVF0013947 vs. NCBI nr
Match: KAE8650840.1 (hypothetical protein Csa_017632 [Cucumis sativus])

HSP 1 Score: 119 bits (298), Expect = 2.12e-32
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLP 59
           M+N  NHVSLEVFWPE+AS PYL+YRC DNVCYWSARNDGIYIYNVPE+KF+LH KWLP
Sbjct: 89  MSNDHNHVSLEVFWPEAASKPYLSYRCRDNVCYWSARNDGIYIYNVPENKFELHTKWLP 147

[Close]

BLAST of IVF0013947 vs. NCBI nr
Match: XP_009372346.1 (PREDICTED: uncharacterized protein LOC103961515 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 1.13e-11
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M N   H S +VFWPES ++ +L YRC+   C+W A+ DGIY+  +PE + +   KW PG
Sbjct: 99  MHNDHQHASFKVFWPES-NHSWLRYRCNYKECFWIAKEDGIYLRVIPESRDEFQLKWEPG 157

[Close]

BLAST of IVF0013947 vs. NCBI nr
Match: XP_004136434.3 (S-protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.38e-11
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M N ++H S  VFWPE +   +LA+RC    C WSAR+DGIY+   P + F+L   W PG
Sbjct: 86  MHNAESHASFNVFWPEKSG--WLAFRCQLRNCIWSARDDGIYLKTNPHNTFELIHTWEPG 143

[Close]

BLAST of IVF0013947 vs. NCBI nr
Match: KGN60342.2 (hypothetical protein Csa_002569, partial [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 4.14e-11
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M N ++H S  VFWPE +   +LA+RC    C WSAR+DGIY+   P + F+L   W PG
Sbjct: 96  MHNAESHASFNVFWPEKSG--WLAFRCQLRNCIWSARDDGIYLKTNPHNTFELIHTWEPG 153

[Close]

BLAST of IVF0013947 vs. NCBI nr
Match: KAE8646230.1 (hypothetical protein Csa_023815 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 9.13e-11
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 7   HVSLEVFWPESASNPYLAYRCSDNV-CYWSARNDGIYIYNVPEHKFDLHAKWLP 59
           +VS E FWPES  NP+L +RC   + C W+A++DGIY+ N+P +  +   KW+P
Sbjct: 88  YVSFESFWPESLKNPWLRHRCGTQLTCLWTAKDDGIYLRNMPTNADEFVHKWIP 141

[Close]

BLAST of IVF0013947 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 46.6 bits (109), Expect = 8.3e-06
Identity = 20/60 (33.33%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M+    H++++VFW     +  L +RC    C W+A+NDG+Y++N    +  L  KW  G
Sbjct: 95  MSKDDGHMNVKVFW----DDVILFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWKSG 150

[Close]

BLAST of IVF0013947 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 43.9 bits (102), Expect = 5.4e-05
Identity = 19/60 (31.67%), Postives = 30/60 (50.00%), Query Frame = 0


Query: 1   MTNGQNHVSLEVFWPESASNPYLAYRCSDNVCYWSARNDGIYIYNVPEHKFDLHAKWLPG 60
           M     H+++ VFW     +  L +RC    C W+A+ DG+Y++N    +  L  KW  G
Sbjct: 95  MNKDNGHMNVNVFW----DDVILFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEVG 150

The following BLAST results are available for this feature:

BLAST of IVF0013947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HQ46	1.2e-04	33.33	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
F4JLS0	7.6e-04	31.67	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]

BLAST of IVF0013947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8P9	4.7e-25	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623980 PE=3 SV=1	[more]
A0A5E4EKH7	4.5e-07	44.07	S-protein homolog OS=Prunus dulcis OX=3755 GN=ALMOND_2B010815 PE=3 SV=1	[more]
M5VN50	4.5e-07	44.07	S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_ppa024219mg PE=3 SV=1	[more]
A0A251N105	4.5e-07	44.07	S-protein homolog OS=Prunus persica OX=3760 GN=PRUPE_8G208400 PE=3 SV=1	[more]
A0A6J5Y6Z2	7.6e-07	45.61	S-protein homolog OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51616 PE=3 SV=1	[more]

BLAST of IVF0013947 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650840.1	2.12e-32	83.05	hypothetical protein Csa_017632 [Cucumis sativus]	[more]
XP_009372346.1	1.13e-11	45.00	PREDICTED: uncharacterized protein LOC103961515 [Pyrus x bretschneideri]	[more]
XP_004136434.3	3.38e-11	46.67	S-protein homolog 1-like [Cucumis sativus]	[more]
KGN60342.2	4.14e-11	46.67	hypothetical protein Csa_002569, partial [Cucumis sativus]	[more]
KAE8646230.1	9.13e-11	46.30	hypothetical protein Csa_023815 [Cucumis sativus]	[more]

BLAST of IVF0013947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29035.1	8.3e-06	33.33	Plant self-incompatibility protein S1 family	[more]
AT4G16295.1	5.4e-05	31.67	S-protein homologue 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 2..57 e-value: 8.7E-6 score: 26.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013947.1	IVF0013947.1	mRNA