IVF0013943 (gene) Melon (IVF77) v1

Overview


Name	IVF0013943
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr02: 15773439 .. 15773666 (-)
RNA-Seq Expression	IVF0013943
Synteny	IVF0013943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCATTTCGTGGAATGAGTTACGATTCGCTCTTTTCCCGTTGGCACTAAGGGATGAAGCGAAGCGATGGAAAAACTCCCTAGAACATGTGGAGATGACAACATGAGAAGAATTAATAAAGAAATTTATGAAGAAATTCTTTCCACCCATCGAAAATGCTAGAAGAAGACAAAATTTGATGCTCTTTAAGCAAAGAGATAGAGAGAATCTGTATGATGCGTGA

mRNA sequence

ATGTCGAGCATTTCGTGGAATGAGTTACGATTCGCTCTTTTCCCGTTGGCACTAAGGGATGAAGCGAAGCGATGGAAAAACTCCCTAGAACATAAATTTATGAAGAAATTCTTTCCACCCATCGAAAATGCTAGAAGAAGACAAAATTTGATGCTCTTTAAGCAAAGAGATAGAGAGAATCTGTATGATGCGTGA

Coding sequence (CDS)

ATGTCGAGCATTTCGTGGAATGAGTTACGATTCGCTCTTTTCCCGTTGGCACTAAGGGATGAAGCGAAGCGATGGAAAAACTCCCTAGAACATAAATTTATGAAGAAATTCTTTCCACCCATCGAAAATGCTAGAAGAAGACAAAATTTGATGCTCTTTAAGCAAAGAGATAGAGAGAATCTGTATGATGCGTGA

Protein sequence

MSSISWNELRFALFPLALRDEAKRWKNSLEHKFMKKFFPPIENARRRQNLMLFKQRDRENLYDA

Homology

[Close]

BLAST of IVF0013943 vs. ExPASy TrEMBL
Match: A0A0A0K974 (Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G040620 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.1e-11
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MSSISWNELRFALFPLALRDEAKRWKNSLE-----------HKFMKKFFPPIENARRRQN 60
          M  IS ++L  ALFPL L +E K+W N+LE            KFMKKFFPPIENA RRQ+
Sbjct: 1  MPDISLDKLHLALFPLILHNETKQWANALEEEEATTSDNLIEKFMKKFFPPIENAIRRQD 60

Query: 61 LMLFKQRDRENLYDA 65
          LM F+Q + ENL DA
Sbjct: 61 LMTFEQSNSENLIDA 75

[Close]

BLAST of IVF0013943 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 19  RDEAKRWKNSLEH-----------KFMKKFFPPIENARRRQNLMLFKQRDRENLYDA 65
           +D+AKRW NS+EH           KFMKKFFP I+ A+RRQ+L+LFKQRDR+NL+DA
Sbjct: 55  KDDAKRWANSMEHGEVTTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQRDRKNLHDA 111

[Close]

BLAST of IVF0013943 vs. ExPASy TrEMBL
Match: A0A5D3E4P5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1985G00070 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 19  RDEAKRWKNSLEH-----------KFMKKFFPPIENARRRQNLMLFKQRDRENLYDA 65
           +D+AKRW NS+EH           KFMKKFFP I+ A+RRQ+L+LFKQ+DR+NL+DA
Sbjct: 55  KDDAKRWANSMEHGEVTTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQKDRKNLHDA 111

[Close]

BLAST of IVF0013943 vs. ExPASy TrEMBL
Match: A0A392QG70 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 4   ISWNELRFALFPLALRDEAKRWKNSLE-----------HKFMKKFFPPIENARRRQNLML 63
           I+    R  LFP +LRD AK W NSLE            KF+ K+FPPI+NAR R  +  
Sbjct: 84  ITQEAFRLRLFPYSLRDRAKSWLNSLEPNSIATWNALAEKFLTKYFPPIKNARMRIEITS 143

Query: 64  FKQRDRENLYDA 65
           F+Q + E+LY+A
Sbjct: 144 FRQAEDESLYEA 155

[Close]

BLAST of IVF0013943 vs. ExPASy TrEMBL
Match: A0A392MI20 (Retrotrans_gag domain-containing protein OS=Trifolium medium OX=97028 GN=A2U01_0008016 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.8e-06
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 4   ISWNELRFALFPLALRDEAKRWKNSLE-----------HKFMKKFFPPIENARRRQNLML 63
           I+    R  LFP +LRD AK W NSLE            KF+ K FPPI+NAR R  ++ 
Sbjct: 52  ITQEAFRLRLFPYSLRDRAKSWLNSLEPNSISTWNALAEKFLTKHFPPIKNARMRIEIIS 111

Query: 64  FKQRDRENLYDA 65
           F+Q + E+LY+A
Sbjct: 112 FRQAEDESLYEA 123

[Close]

BLAST of IVF0013943 vs. NCBI nr
Match: KGN45973.1 (hypothetical protein Csa_005655 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 5.78e-16
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MSSISWNELRFALFPLALRDEAKRWKNSLEH-----------KFMKKFFPPIENARRRQN 60
          M  IS ++L  ALFPL L +E K+W N+LE            KFMKKFFPPIENA RRQ+
Sbjct: 1  MPDISLDKLHLALFPLILHNETKQWANALEEEEATTSDNLIEKFMKKFFPPIENAIRRQD 60

Query: 61 LMLFKQRDRENLYDA 64
          LM F+Q + ENL DA
Sbjct: 61 LMTFEQSNSENLIDA 75

[Close]

BLAST of IVF0013943 vs. NCBI nr
Match: WP_217833228.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 65.5 bits (158), Expect = 1.29e-11
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 3  SISWNELRFALFPLALRDEAKRWKNSLE-----------HKFMKKFFPPIENARRRQNLM 62
          +IS +++R  LFP +LRDEA++W  SLE            KFMKK+FP  ENARRR+++ 
Sbjct: 21 NISADDIRLTLFPFSLRDEARQWAYSLEPGEITTWNQMIEKFMKKYFPLTENARRRRDIA 80

Query: 63 LFKQRDRENLYDA 64
           F+Q+DRE + +A
Sbjct: 81 NFQQKDRETVSNA 93

[Close]

BLAST of IVF0013943 vs. NCBI nr
Match: KAA0061983.1 (uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.09e-11
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 19  RDEAKRWKNSLEH-----------KFMKKFFPPIENARRRQNLMLFKQRDRENLYDA 64
           +D+AKRW NS+EH           KFMKKFFP I+ A+RRQ+L+LFKQRDR+NL+DA
Sbjct: 55  KDDAKRWANSMEHGEVTTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQRDRKNLHDA 111

[Close]

BLAST of IVF0013943 vs. NCBI nr
Match: TYK30531.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 8.13e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 19  RDEAKRWKNSLEH-----------KFMKKFFPPIENARRRQNLMLFKQRDRENLYDA 64
           +D+AKRW NS+EH           KFMKKFFP I+ A+RRQ+L+LFKQ+DR+NL+DA
Sbjct: 55  KDDAKRWANSMEHGEVTTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQKDRKNLHDA 111

[Close]

BLAST of IVF0013943 vs. NCBI nr
Match: MCI22877.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 59.7 bits (143), Expect = 7.83e-09
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 4   ISWNELRFALFPLALRDEAKRWKNSLE-----------HKFMKKFFPPIENARRRQNLML 63
           I+    R  LFP +LRD AK W NSLE            KF+ K+FPPI+NAR R  +  
Sbjct: 84  ITQEAFRLRLFPYSLRDRAKSWLNSLEPNSIATWNALAEKFLTKYFPPIKNARMRIEITS 143

The following BLAST results are available for this feature:

BLAST of IVF0013943 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K974	9.1e-11	54.67	Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G040...	[more]
A0A5A7V1F3	1.5e-08	59.65	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3E4P5	3.2e-08	57.89	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A392QG70	4.0e-06	44.44	Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028...	[more]
A0A392MI20	6.8e-06	44.44	Retrotrans_gag domain-containing protein OS=Trifolium medium OX=97028 GN=A2U01_0...	[more]

BLAST of IVF0013943 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45973.1	5.78e-16	54.67	hypothetical protein Csa_005655 [Cucumis sativus]	[more]
WP_217833228.1	1.29e-11	46.58	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
KAA0061983.1	3.09e-11	59.65	uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]	[more]
TYK30531.1	8.13e-11	57.89	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
MCI22877.1	7.83e-09	44.44	hypothetical protein [Trifolium medium]	[more]

BLAST of IVF0013943 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013943.1	IVF0013943.1	mRNA