IVF0013936 (gene) Melon (IVF77) v1

Overview
NameIVF0013936
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr11: 20337963 .. 20338238 (-)
RNA-Seq ExpressionIVF0013936
SyntenyIVF0013936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAGCTCTTCGTGGATGGATGAAGCACTATAAAGACGTCCTACCCTTCCCATCTACAGTTGAGAAGTTGTGTCTCAAATATCTCCCCACCCTCGCGAAATACCCACAGATAAAAATGAGTGGGAGAGTCAACTTGGCGGGACTCAGTCGAATAAGCAGCCTCCACCAAAATAAAGAGGAAGAAAGATGCCAAAAGACACAGAAACAAAGGAGACCAGAGTCTGAGAGTGACAAAGTTGAGAAGTCTCCACCCCACCGTGTTGGAATTTAA

mRNA sequence

ATGAATGAAGCTCTTCGTGGATGGATGAAGCACTATAAAGACGTCCTACCCTTCCCATCTACAGTTGAGAAGTTGTGTCTCAAATATCTCCCCACCCTCGCGAAATACCCACAGATAAAAATGAGTGGGAGAGTCAACTTGGCGGGACTCAGTCGAATAAGCAGCCTCCACCAAAATAAAGAGGAAGAAAGATGCCAAAAGACACAGAAACAAAGGAGACCAGAGTCTGAGAGTGACAAAGTTGAGAAGTCTCCACCCCACCGTGTTGGAATTTAA

Coding sequence (CDS)

ATGAATGAAGCTCTTCGTGGATGGATGAAGCACTATAAAGACGTCCTACCCTTCCCATCTACAGTTGAGAAGTTGTGTCTCAAATATCTCCCCACCCTCGCGAAATACCCACAGATAAAAATGAGTGGGAGAGTCAACTTGGCGGGACTCAGTCGAATAAGCAGCCTCCACCAAAATAAAGAGGAAGAAAGATGCCAAAAGACACAGAAACAAAGGAGACCAGAGTCTGAGAGTGACAAAGTTGAGAAGTCTCCACCCCACCGTGTTGGAATTTAA

Protein sequence

MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPPHRVGI
Homology
BLAST of IVF0013936 vs. ExPASy TrEMBL
Match: A0A5A7ULS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00200 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.6e-39
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 4   ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEE 63
           ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEE
Sbjct: 105 ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNKEEE 164

Query: 64  RCQKTQKQRRPESESDKVEKSPPHR 89
           RCQKTQKQRRPESESDKVEKSPPH+
Sbjct: 165 RCQKTQKQRRPESESDKVEKSPPHQ 189

BLAST of IVF0013936 vs. ExPASy TrEMBL
Match: A0A0A0L9R5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.4e-19
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNK 60
          +N AL GWMKH KD  PFP+ VEKLC KYLPT  +YPQI+M GRVNLAGL+R+ S+H NK
Sbjct: 2  INRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNK 61

Query: 61 EEERCQKTQKQRRPESESDKVEKSPPH 88
          E    QKTQKQ   E E   V +SP H
Sbjct: 62 EGLCRQKTQKQGGYELEQQDVNESPHH 88

BLAST of IVF0013936 vs. ExPASy TrEMBL
Match: A0A5D3DFD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00890 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 1   MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNK 60
           MN AL GWM H++   PFP+T+EKLC KYLPTLA+YP+I+M GRVNLAGL+R+ +LH NK
Sbjct: 46  MNRALLGWMGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEMGGRVNLAGLNRLRTLHLNK 105

Query: 61  EEERCQKT 69
           EEE  Q T
Sbjct: 106 EEELRQNT 113

BLAST of IVF0013936 vs. ExPASy TrEMBL
Match: A0A5A7TGV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00400 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-14
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 1  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQN 60
          M EAL  WM+H K V PFP T+EKLCLKY+P+L + PQ  M  GR +LAGL+R+ + +QN
Sbjct: 1  MQEALFTWMEHPKGVKPFPKTMEKLCLKYIPSLKELPQENMVEGRCSLAGLNRVITFYQN 60

Query: 61 KEEERCQKTQKQRRPESESDKVEKSPP 87
          KEEERC KT  +++ E +S+     PP
Sbjct: 61 KEEERCIKTLGKKKLEEDSEGDTSPPP 87

BLAST of IVF0013936 vs. ExPASy TrEMBL
Match: A0A5A7V6C0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00540 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 1   MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQN 60
           MN+A  GWM++ K    FP+  +K C KYL TLA+YPQ  M  G+ N+A L+RI +L+QN
Sbjct: 123 MNKAFLGWMRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQN 182

Query: 61  KEEERCQKTQKQRRPESESDKVEKSPP 87
           KEEE CQ   + ++   ++  V+   P
Sbjct: 183 KEEE-CQGKVEPKKVTKDATSVDSDLP 208

BLAST of IVF0013936 vs. NCBI nr
Match: KAA0054399.1 (hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ96826.1 hypothetical protein E5676_scaffold2750G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (432), Expect = 4.49e-50
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0

Query: 1   MNE--ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQ 60
           +NE  ALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQ
Sbjct: 100 LNEYHALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQ 159

Query: 61  NKEEERCQKTQKQRRPESESDKVEKSPPH 87
           NKEEERCQKTQKQRRPESESDKVEKSPPH
Sbjct: 160 NKEEERCQKTQKQRRPESESDKVEKSPPH 188

BLAST of IVF0013936 vs. NCBI nr
Match: KGN57724.1 (hypothetical protein Csa_010778 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 4.50e-27
Identity = 54/87 (62.07%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNK 60
          +N AL GWMKH KD  PFP+ VEKLC KYLPT  +YPQI+M GRVNLAGL+R+ S+H NK
Sbjct: 2  INRALLGWMKHPKDTKPFPTRVEKLCHKYLPTFVRYPQIEMGGRVNLAGLNRLRSIHSNK 61

Query: 61 EEERCQKTQKQRRPESESDKVEKSPPH 87
          E    QKTQKQ   E E   V +SP H
Sbjct: 62 EGLCRQKTQKQGGYELEQQDVNESPHH 88

BLAST of IVF0013936 vs. NCBI nr
Match: KAA0060350.1 (hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK22100.1 hypothetical protein E5676_scaffold318G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.25e-24
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 1   MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKMSGRVNLAGLSRISSLHQNK 60
           MN AL GWM H++   PFP+T+EKLC KYLPTLA+YP+I+M GRVNLAGL+R+ +LH NK
Sbjct: 46  MNRALLGWMGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEMGGRVNLAGLNRLRTLHLNK 105

Query: 61  EEERCQKT 68
           EEE  Q T
Sbjct: 106 EEELRQNT 113

BLAST of IVF0013936 vs. NCBI nr
Match: KAA0040817.1 (hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa] >TYK17794.1 hypothetical protein E5676_scaffold306G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.37e-19
Identity = 46/87 (52.87%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 1  MNEALRGWMKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQN 60
          M EAL  WM+H K V PFP T+EKLCLKY+P+L + PQ  M  GR +LAGL+R+ + +QN
Sbjct: 1  MQEALFTWMEHPKGVKPFPKTMEKLCLKYIPSLKELPQENMVEGRCSLAGLNRVITFYQN 60

Query: 61 KEEERCQKTQKQRRPESESDKVEKSPP 86
          KEEERC KT  +++ E +S+     PP
Sbjct: 61 KEEERCIKTLGKKKLEEDSEGDTSPPP 87

BLAST of IVF0013936 vs. NCBI nr
Match: KAA0065577.1 (hypothetical protein E6C27_scaffold90G00150 [Cucumis melo var. makuwa] >TYK07143.1 hypothetical protein E5676_scaffold606G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.61e-12
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 41 MSGRVNLAGLSRISSLHQNKEEERCQKTQKQRRPESESDKVEKSPP 86
          M GRVNLAGLS I +LH+NKEEER QKTQKQRRPESE++KVEKS P
Sbjct: 1  MGGRVNLAGLSYIGNLHENKEEERRQKTQKQRRPESENNKVEKSLP 46

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7ULS06.6e-3998.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L9R53.4e-1962.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263220 PE=4 SV=1[more]
A0A5D3DFD31.4e-1766.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TGV64.3e-1452.87Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6C02.1e-0843.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0054399.14.49e-5096.63hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ9682... [more]
KGN57724.14.50e-2762.07hypothetical protein Csa_010778 [Cucumis sativus][more]
KAA0060350.11.25e-2466.18hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK2210... [more]
KAA0040817.12.37e-1952.87hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa] >TYK1779... [more]
KAA0065577.11.61e-1280.43hypothetical protein E6C27_scaffold90G00150 [Cucumis melo var. makuwa] >TYK07143... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013936.1IVF0013936.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding