IVF0013885 (gene) Melon (IVF77) v1

Overview


Name	IVF0013885
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	serine-rich protein-related
Location	chr02: 15778385 .. 15779556 (+)
RNA-Seq Expression	IVF0013885
Synteny	IVF0013885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGCATTGTCAATCAACACCTTTGCTTTCATGTCTCACTTATAAAACTCCGATTCCACATATTCTTTTCTTTTCAATCCCCACAAGATAACTCATTAAATTATCAAGTCCCCAAAACATAAAACACAAATCGCAATTTTACAAAGCCGCGCAGAGCAACAATAACCAAAAGCAATGTGTTACCCACACCATTTCCTGCCTCGCACGGACTTTTTGTCTCCCCAATGCAATTGGGTTCTCTTTCAGACCGTACCGGCGGAGGAGACGACAGCGGCGATTGAGAGTTGCGGCGATGAGTCGGGGAAAAGGCGGTGTTTGTGCTCGCCGACGACGCACCCAGGGTCTTTTCGTTGCAGGTTACACCGAAGTGAGTACGTTTGGGTTGCGCGGCGGAGGACGGTAAAAAATGTATCGGCGGAGGTTAAAGTACTGACGAACGATAAGTAATTACTTTTGGTGGTCTCTGTAAAAGTAATATGAATGAGTTTGTGTGTATTATATATAACCATAATTGGGATTGCATGCAATTGCATATGGATGAATATTAGTTGTGGCTTTTAACTTGGTTAAGGTTTTTGGAACTAAATTTTTATGATAGAAGTCCAATGTCCCCTTGGATATTTTGAGAGGTTGAATTTTAGTTAAAGAAGTGGAATGTCCATTTTCGAGTCTATGTTATTACTGTGCTATGCATGTGAAGTTTTATGTATTATGAAAATAAAAATATAAAACCAACGAAGATCCGTTACCGTATGTATGCTCTAAAATAATCATGGAAATTTTAAAAGTTCTTTTTTTTTTTTTTTAAACATTTTTCTATTAACTTTTTCCTGTCTCGTTGCTCTGGCTCGTATTCCTCATTTGTTTTTCTTGCTCTAGCTCTTTAGTCTCGCTTGGTTTTGTACACCTTCAATATTTGAATGTTAAAAGTTTTATGGTAAGAGAGAAAAAAGACGAGAATGACAACTAGAGATCTAAAATTAATGAAATTTTTCCAAAAGAAGAGAGGAATCAACAAATCAAAAATTATATAACCCTACTTTCTAATATCGACCTAGTATTTTGAACCAACAATACAATTATCTAAAAAAACATACTTGATCTCATAAAGAGAGCATGAGAAACGTCCATGAGGACAGCCATTTGAGTTCCATGAAACCTTTGTAGGAC

mRNA sequence

GTTTGGCATTGTCAATCAACACCTTTGCTTTCATGTCTCACTTATAAAACTCCGATTCCACATATTCTTTTCTTTTCAATCCCCACAAGATAACTCATTAAATTATCAAGTCCCCAAAACATAAAACACAAATCGCAATTTTACAAAGCCGCGCAGAGCAACAATAACCAAAAGCAATGTGTTACCCACACCATTTCCTGCCTCGCACGGACTTTTTGTCTCCCCAATGCAATTGGGTTCTCTTTCAGACCGTACCGGCGGAGGAGACGACAGCGGCGATTGAGAGTTGCGGCGATGAGTCGGGGAAAAGGCGGTGTTTGTGCTCGCCGACGACGCACCCAGGGTCTTTTCGTTGCAGGTTACACCGAAGTGAGTACGTTTGGGTTGCGCGGCGGAGGACGGTAAAAAATGTATCGGCGGAGGTTAAAGTACTGACGAACGATAAGTAATTACTTTTGGTGGTCTCTGTAAAAGTAATATGAATGAGTTTGTGTGTATTATATATAACCATAATTGGGATTGCATGCAATTGCATATGGATGAATATTAGTTGTGGCTTTTAACTTGGTTAAGGTTTTTGGAACTAAATTTTTATGATAGAAGTCCAATGTCCCCTTGGATATTTTGAGAGGTTGAATTTTAGTTAAAGAAGTGGAATGTCCATTTTCGAGTCTATGTTATTACTGTGCTATGCATGTGAAGTTTTATGTATTATGAAAATAAAAATATAAAACCAACGAAGATCCGTTACCGTATGTATGCTCTAAAATAATCATGGAAATTTTAAAAGTTCTTTTTTTTTTTTTTTAAACATTTTTCTATTAACTTTTTCCTGTCTCGTTGCTCTGGCTCGTATTCCTCATTTGTTTTTCTTGCTCTAGCTCTTTAGTCTCGCTTGGTTTTGTACACCTTCAATATTTGAATGTTAAAAGTTTTATGGTAAGAGAGAAAAAAGACGAGAATGACAACTAGAGATCTAAAATTAATGAAATTTTTCCAAAAGAAGAGAGGAATCAACAAATCAAAAATTATATAACCCTACTTTCTAATATCGACCTAGTATTTTGAACCAACAATACAATTATCTAAAAAAACATACTTGATCTCATAAAGAGAGCATGAGAAACGTCCATGAGGACAGCCATTTGAGTTCCATGAAACCTTTGTAGGAC

Coding sequence (CDS)

ATGTGTTACCCACACCATTTCCTGCCTCGCACGGACTTTTTGTCTCCCCAATGCAATTGGGTTCTCTTTCAGACCGTACCGGCGGAGGAGACGACAGCGGCGATTGAGAGTTGCGGCGATGAGTCGGGGAAAAGGCGGTGTTTGTGCTCGCCGACGACGCACCCAGGGTCTTTTCGTTGCAGGTTACACCGAAGTGAGTACGTTTGGGTTGCGCGGCGGAGGACGGTAAAAAATGTATCGGCGGAGGTTAAAGTACTGACGAACGATAAGTAA

Protein sequence

MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRCRLHRSEYVWVARRRTVKNVSAEVKVLTNDK

Homology

[Close]

BLAST of IVF0013885 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.9e-47
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60
          MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC
Sbjct: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60

Query: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 91
          RLHRSEYVWVARRRTVKNVSAEVKVLTNDK
Sbjct: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 90

[Close]

BLAST of IVF0013885 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60
          MCYPHHFL R DF S QCNWVLFQT PAE+ T AIESCGDESGKRRCLCSPT HPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 91
          RLHR+EYVWVARRRTVKN  AE K+LTNDK
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGKILTNDK 90

[Close]

BLAST of IVF0013885 vs. ExPASy TrEMBL
Match: A0A7J7DQF6 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00558 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQT--VPAEETTAAIESCGDESGKRRCLCSPTTHPGSF 60
          MC+P  FL   + L  Q  W++ Q   V    + AA E  G     ++CLCSPTTHPGSF
Sbjct: 1  MCHPGVFLVSREDLVGQQRWMVQQAGGVDGRRSQAAGEGGGFSGSIKQCLCSPTTHPGSF 60

Query: 61 RCRLHRSEYVWVAR 73
          +CR H ++YVW  R
Sbjct: 61 KCRKHHADYVWGGR 74

[Close]

BLAST of IVF0013885 vs. ExPASy TrEMBL
Match: A0A4P1RQR0 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_04528 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQ-TVPAEETTAAIESCGDESGK----RRCLCSPTTHP 60
          MCYP       + L  Q  W++FQ T+ A +      +  D SG+    +RC+CSP+ HP
Sbjct: 1  MCYPGIPFRSQEGLVVQRRWIMFQGTLMAGQVHGDGGNNDDNSGQGGSGKRCVCSPSQHP 60

Query: 61 GSFRCRLHRSEYVWVARRRTVK 78
          GSFRCR H  +YVW  R RTVK
Sbjct: 61 GSFRCRQHHDQYVW--RGRTVK 80

[Close]

BLAST of IVF0013885 vs. ExPASy TrEMBL
Match: V4TV07 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010038mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-07
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 1  MCYPH--HFLPRTDFLSPQCNWVLFQTVPAEETTAAI--ESCGDESGK-----RRCLCSP 60
          MCYP     + RTD +  Q  W +   VP +     +  E+ G + G      ++C+CSP
Sbjct: 1  MCYPTGVSLVSRTDLVLVQGRWFV-SRVPVQGANEEVGGEAAGGDGGSGGGLIKQCVCSP 60

Query: 61 TTHPGSFRCRLHRSEYVWVARRRTVKN 79
          TTHPGSFRCR H ++YVW  R   V++
Sbjct: 61 TTHPGSFRCRHHHAQYVWRGRITKVES 86

[Close]

BLAST of IVF0013885 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (496), Expect = 4.69e-63
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60
          MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC
Sbjct: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60

Query: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 90
          RLHRSEYVWVARRRTVKNVSAEVKVLTNDK
Sbjct: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 90

[Close]

BLAST of IVF0013885 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus])

HSP 1 Score: 166 bits (420), Expect = 1.86e-51
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60
          MCYPHHFL R DF S QCNWVLFQT PAE+ T AIESCGDESGKRRCLCSPT HPGSFRC
Sbjct: 1  MCYPHHFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVARRRTVKNVSAEVKVLTNDK 90
          RLHR+EYVWVARRRTVKN  AE K+LTNDK
Sbjct: 61 RLHRNEYVWVARRRTVKNGPAEGKILTNDK 90

[Close]

BLAST of IVF0013885 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111 bits (278), Expect = 7.68e-30
Identity = 57/91 (62.64%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESGKRRCLCSPTTHPGSFRC 60
          MCYPH   PR +FL+ QCNWVL QT        A+ES G ES K+RCLCSPT HPGSFRC
Sbjct: 1  MCYPHDVPPRREFLNVQCNWVLLQTA-----ATAVESGGGESVKKRCLCSPTRHPGSFRC 60

Query: 61 RLHRSEYVWVARRRTVKNVSAEVK--VLTND 89
          RLHRSEYVWV R R VK+  A  K   L ND
Sbjct: 61 RLHRSEYVWVGRPRMVKSGPAASKKVALFND 86

[Close]

BLAST of IVF0013885 vs. NCBI nr
Match: KAF5748600.1 (hypothetical protein HS088_TW04G00558 [Tripterygium wilfordii])

HSP 1 Score: 67.0 bits (162), Expect = 2.67e-12
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 1  MCYPHHFLPRTDFLSPQCNWVLFQT--VPAEETTAAIESCGDESGKRRCLCSPTTHPGSF 60
          MC+P  FL   + L  Q  W++ Q   V    + AA E  G     ++CLCSPTTHPGSF
Sbjct: 1  MCHPGVFLVSREDLVGQQRWMVQQAGGVDGRRSQAAGEGGGFSGSIKQCLCSPTTHPGSF 60

Query: 61 RCRLHRSEYVWVAR 72
          +CR H ++YVW  R
Sbjct: 61 KCRKHHADYVWGGR 74

[Close]

BLAST of IVF0013885 vs. NCBI nr
Match: KAG6669361.1 (hypothetical protein CIPAW_01G239000 [Carya illinoinensis] >KAG6733751.1 hypothetical protein I3842_01G240100 [Carya illinoinensis] >KAG7997856.1 hypothetical protein I3843_01G230700 [Carya illinoinensis])

HSP 1 Score: 65.5 bits (158), Expect = 1.35e-11
Identity = 37/82 (45.12%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MCYPHHFLP------RTDFLSPQCNWVLFQTVPAEE---TTAAIESCGDESGKRRCLCSP 60
          MC+P  FL       R      Q  W    TV A +   T  A E   D + K+ C+CSP
Sbjct: 1  MCHPDFFLVEVADDRRNRRRRRQPVWAETATVEANQQAQTELAREVNRDGATKKYCMCSP 60

Query: 61 TTHPGSFRCRLHRSEYVWVARR 73
          T HPGSFRCR HRSEY+W+ RR
Sbjct: 61 TRHPGSFRCRYHRSEYIWLGRR 82

[Close]

BLAST of IVF0013885 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-07
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 30 ETTAAIESCGD-ESGKRRCLCSPTTHPGSFRCRLHRSEYVWV 71
          E TA   S GD   GK++C+CSP+ HP SF+CR H+ EY W+
Sbjct: 32 EATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWL 73

[Close]

BLAST of IVF0013885 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 44 KRRCLCSPTTHPGSFRCRLHRS 66
          K  CLCSPTTHPGSFRCR+HRS
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of IVF0013885 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = 0


Query: 44 KRRCLCSPTTHPGSFRCRLHRS 66
          K  CLCSPTTHPGSFRCR+HRS
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRS 62

[Close]

BLAST of IVF0013885 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 44  KRRCLCSPTTHPGSFRCRLHRS 66
           +RRC+CSPTTHPGSFRC LH++
Sbjct: 123 RRRCMCSPTTHPGSFRCSLHKN 144

[Close]

BLAST of IVF0013885 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 44  KRRCLCSPTTHPGSFRCRLHRS 66
           +RRC+CSPTTHPGSFRC LH++
Sbjct: 123 RRRCMCSPTTHPGSFRCSLHKN 144

The following BLAST results are available for this feature:

BLAST of IVF0013885 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXE6	2.9e-47	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LZG6	1.9e-38	84.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1	[more]
A0A7J7DQF6	3.5e-08	44.59	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00558 ...	[more]
A0A4P1RQR0	3.9e-07	43.90	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_04528 PE=4 S...	[more]
V4TV07	5.0e-07	39.08	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010038mg PE=4 ...	[more]

BLAST of IVF0013885 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046597.1	4.69e-63	100.00	hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]	[more]
KGN65356.1	1.86e-51	84.44	hypothetical protein Csa_020011 [Cucumis sativus]	[more]
KAG6589902.1	7.68e-30	62.64	hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF5748600.1	2.67e-12	44.59	hypothetical protein HS088_TW04G00558 [Tripterygium wilfordii]	[more]
KAG6669361.1	1.35e-11	45.12	hypothetical protein CIPAW_01G239000 [Carya illinoinensis] >KAG6733751.1 hypothe...	[more]

BLAST of IVF0013885 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	2.9e-07	52.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.1	1.9e-06	86.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.9e-06	86.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G25280.1	5.5e-06	77.27	serine-rich protein-related	[more]
AT5G25280.2	5.5e-06	77.27	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 24..75
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 24..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013885.1	IVF0013885.1	mRNA