IVF0013881 (gene) Melon (IVF77) v1

Overview


Name	IVF0013881
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA polymerase sigma factor
Location	chr11: 30423123 .. 30427163 (+)
RNA-Seq Expression	IVF0013881
Synteny	IVF0013881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATAATTCTCACCATCATTCCTTTCTTCCTACTGCTTATTCCAGTTACAGTGAGTGTTTTTGTTTTTCTCTCTCATTCTCTCTTTCTTTACCTTTTTTCCCGTGTTGTTCAAATGGGGTTTTGGTGTTCTGGGTTGCTTTCTTGTCGAGCTGGGGTAAAATGTGTTCTGCTAGTTGCTAAGTTCAGCCATATGTTCAAGTTTTTGAGTTGCATTGCTTGAATTTCTGTCCTGACATTCTTTGTTTTAGGTGGCGCGAGGCTTTAAGTTCTAGTTTACATCAAAACATTTCTCAGACGGTGCTGATATCGATGTTATTATTGTGTTTGAATATGATTGAAATTTAAATTTACCTTTTCAAATAGTATTGTGTAAGTTTGTTTTAAATGACAGAATGTTCTTCTTTCTTTTGGACTGCTAGGATGTGTTATGGGTGCCCAATGGAGTGATTGGGAAATATGTCCAATCCAATTTTCAGAGAAAAAAAATTATAGTAAAAACAAAAAGATACCCTAAGGAAACATAATGATGAAAGTAGTTTTTTAAACCAGTCATTCAATTAGTCTATACTTTATCCAAATTATCATTGGTTTTGAGTTCAATAACATGTGAAATGGAGTGGAGAGATTCAAATATTTGATCTCTTGGTTGAAAGTATACGTTTTTAGCAGTTCAGCATAACACCCAAATTATCATCAATGATGTATATAATAGTAGTTGAGCAGAATGTTAGCTAGGTGTAGCTCTGTCAGTGACGGATCAATTATAGTCACACACAAAGTATCCAACAATGCAGAAAAAAAGTTTAGACCAACTTTGGAACTCCTGAAGACCAATCAAAGACCTCCTTCCTCATTTTAAACATTTCCACTCCACCCCCAACCCCATCTATTATTTTTAATACAATAGCGGTGGTAGAGATATTTGAAACACAAACCTCTTGGTCAATTGTTGCTAGGTGAGCTATGCTCATTTTGTTTTCTTTAAACATTTTATTGCATAGTCTTGAGTTGGTATTTCTTATCTACAGTGGTAAGTAAGGAAAGTCTCAAGTATATGACATTTGGAACTATTTTTTACTCCAGATGATGATAGAGTAAGAAGCGAGGTTTTGTGTGTCAATTTCTACTTTTATTATGAAACACTTTTAAAACAACTGACTCTATGATTAAAGTTTTGGTGGGTGATTATATTGATGATCCATCTTTACCAAGGGACTGTTTGGTTGACTTTTTCACTTCTCAAAGACATTTTTTTTCCTCTTAAAAATACTTTTTTAAGCATTTAGAAGGCAATCCAAACAGACTTAAAGTCTATAACCCAAGAAGTTCATTCAGGGTGAAAGATTTTTATTGAAAACCTTTTCTTATAAATTTTCTAATCATGCAGCTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACCGGAACAGCTACAACACTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCTTATTTAGGTGCAGTTGAATCGAGTCTAGCCTCTACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCGGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATATCAACTCTTCCAGAGCAGGAACAAAATCTCAACCTTCTCCCAAACCTGATGCTTTACATTTCAAATGGGCTCAATTTATGGAATCGGAAAGAGCTGACATAATAGGAGAACCAGTTGGAGTTAATAAACGCCCCATCGAAGGCGATGCTTTGGAACCCAGCACAACAGAATCTGATGATGTGGAGCCAACATCAGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAAGTCAAAGCGTCAAACAGAAAGGAAAGCGAGAAGAACTAGAGCAGCAGAGAAGACTGTTACTAGTGTAGTGCCGTTCAAGTCTGGTTCTAGCAGTCGGAAGAAGCGCAGTTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACCTCCAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGTTTGATTTTCAGTCATTTAATTAAATCAACTCATTTGTGTCTTCATTAAATTCCGCGGTAAGATAAGAACTCTATTTTACAGTTGATAGCAAATCTGGATTTGTTTGTTTGTAACCCAGAAACATTATTTCAAGTAATTTTTATAATCCATCTCATTTGGATAAAATTTTCAAGAAAAACTGGGAATAGAAAATGTGAAACAAATGAAGTGGATATACTCGATCCACCCTAGATAAATTTAGCTTTATTCTGTTTTTTGTACAGCCTAGCAGTTCTCTTCATTTATGAAGAAGATATGCAGACAAAAGTCCCGGGCATGGTGGTATTAGTTTAAGGTTACTGATCACACTATTATGTTCTTTGAAACTTCCAATAAGTTGTCTGATCCAGCGACTAAATAGAATCTAATTTTAGTTGCCTATCTTGAATTTGATTCCTCTATTGGAATACATAGATTGATGCTATTGATCAATGATCAACACCAGTGGCTCTTAGATGGTGATTTTGGGTTAATTTTGATTTCCTGATTTATGTCTTATATTCCATGCTTTCTTTTGATTTCTGATATTTGCTTCAACTATTTCCTAATCCAGGATTTACTGAAACTGGAACGGCTTCAGGAGGAGCTTGCCGAACGATATGGGAATGAACCAACCTTTGCACAATGGGCAGCTGCTGCTGGCGTCAATCAAAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTAGTTCAGGTACTTTTTCGTTGTTGGACTCCAGGCAAAATGCTTATGGATGGAAACCGAAATTATGTCTTGCTTTAATTTCAAATTACTCATTGCTTGTGTTTTAACGTGCAGGAAGGATGTCGAGGCCTTGTAAGGGGTGCAGAGAAGTTTGATGCATCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAAGCAGTGCGAAAGTTTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCAGTATGTTTCTTTTTCCCAGCATTTGTTTAGTAAAAATTGCTTTGAAGAGAAACAAATTCATTATGGAAGTAGGGAGAAAAAAAATTAACCTATGGAAGTCCAAAAAGAACTTGCTAATTGAAGAAATTTCATTCCTCACACTTCTCCAATAATCAACGTTGATGAATGGGCAGTTCCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATTAAGTGAAAATGGCAGACATCCTGATGACAAAGAAATTGCTGAAGCAGCCGGGCTTTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCAAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGTTCGTCTTATTGCTACTCGGTTCCTTTTCCTGTTTCTCATGGCAATATCACCATCTTTGACCTATTTGATTTTCATGCTCTTTACCAGGAAGTCATTTCCGATCCGGAAGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCCTTAACCCAAGAGAGAAACAAGTAATTAGATGGAGGTTTGGAATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

mRNA sequence

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATAATTCTCACCATCATTCCTTTCTTCCTACTGCTTATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACCGGAACAGCTACAACACTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCTTATTTAGGTGCAGTTGAATCGAGTCTAGCCTCTACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCGGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATATCAACTCTTCCAGAGCAGGAACAAAATCTCAACCTTCTCCCAAACCTGATGCTTTACATTTCAAATGGGCTCAATTTATGGAATCGGAAAGAGCTGACATAATAGGAGAACCAGTTGGAGTTAATAAACGCCCCATCGAAGGCGATGCTTTGGAACCCAGCACAACAGAATCTGATGATGTGGAGCCAACATCAGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAAGTCAAAGCGTCAAACAGAAAGGAAAGCGAGAAGAACTAGAGCAGCAGAGAAGACTGTTACTAGTGTAGTGCCGTTCAAGTCTGGTTCTAGCAGTCGGAAGAAGCGCAGTTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACCTCCAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGATTTACTGAAACTGGAACGGCTTCAGGAGGAGCTTGCCGAACGATATGGGAATGAACCAACCTTTGCACAATGGGCAGCTGCTGCTGGCGTCAATCAAAGGACACTGAGGAAACAAAATGATAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTAAGGGGTGCAGAGAAGTTTGATGCATCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAAGCAGTGCGAAAGTTTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTCCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATTAAGTGAAAATGGCAGACATCCTGATGACAAAGAAATTGCTGAAGCAGCCGGGCTTTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCAAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGAAGTCATTTCCGATCCGGAAGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCCTTAACCCAAGAGAGAAACAAGTAATTAGATGGAGGTTTGGAATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCTGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATAATTCTCACCATCATTCCTTTCTTCCTACTGCTTATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACCGGAACAGCTACAACACTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCTTATTTAGGTGCAGTTGAATCGAGTCTAGCCTCTACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCGGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATATCAACTCTTCCAGAGCAGGAACAAAATCTCAACCTTCTCCCAAACCTGATGCTTTACATTTCAAATGGGCTCAATTTATGGAATCGGAAAGAGCTGACATAATAGGAGAACCAGTTGGAGTTAATAAACGCCCCATCGAAGGCGATGCTTTGGAACCCAGCACAACAGAATCTGATGATGTGGAGCCAACATCAGAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAAGTCAAAGCGTCAAACAGAAAGGAAAGCGAGAAGAACTAGAGCAGCAGAGAAGACTGTTACTAGTGTAGTGCCGTTCAAGTCTGGTTCTAGCAGTCGGAAGAAGCGCAGTTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACCTCCAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGATTTACTGAAACTGGAACGGCTTCAGGAGGAGCTTGCCGAACGATATGGGAATGAACCAACCTTTGCACAATGGGCAGCTGCTGCTGGCGTCAATCAAAGGACACTGAGGAAACAAAATGATAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTAAGGGGTGCAGAGAAGTTTGATGCATCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAAGCAGTGCGAAAGTTTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTCCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATTAAGTGAAAATGGCAGACATCCTGATGACAAAGAAATTGCTGAAGCAGCCGGGCTTTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCAAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGAAGTCATTTCCGATCCGGAAGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCCTTAACCCAAGAGAGAAACAAGTAATTAGATGGAGGTTTGGAATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

Homology

[Close]

BLAST of IVF0013881 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 617.5 bits (1591), Expect = 1.6e-175
Identity = 364/594 (61.28%), Postives = 437/594 (73.57%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPT 61
           SCLLPQFKC P++FSI F+T        SF    ++  +    P     QC +S  SP  
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT--------SFCAPKHNKGSVFFQP-----QCAVS-TSPAL 62

Query: 62  STGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   + L+V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMES 181
            + AAAAEAV LA+AAVKVA+DA L   +NN N   + T  + S        KW QF E 
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRS--------KWDQFTEK 182

Query: 182 ERADIIGEPVGVNKRPIEGDALEPSTTESDDV----EPTSEELELLQDELSESITVKSKR 241
           ERA I+G  + V+   I  D +  S +  + +        EE+ELL+++ S S+ V+S R
Sbjct: 183 ERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTR 242

Query: 242 QTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT 301
           QTERKARR +  EKT + +   K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  
Sbjct: 243 QTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVR 302

Query: 302 EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND--------- 361
           EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR++           
Sbjct: 303 EEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKM 362

Query: 362 -KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 421
            KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAV
Sbjct: 363 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAV 422

Query: 422 RKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLM 481
           RK LSDQSR IRLPFHMVEATYRVKEARKQL SE G+HP ++EIAEA GLSMKRL AVL+
Sbjct: 423 RKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 482

Query: 482 TPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVI 541
           +PK PRSL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  REKQVI
Sbjct: 483 SPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVI 542

Query: 542 RWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 571
           RWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 RWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of IVF0013881 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.6e-69
Identity = 149/332 (44.88%), Postives = 217/332 (65.36%), Query Frame = 0


Query: 249 KSG--SSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQE 308
           KSG  + SR++  S ++    D +R         RLL A EE+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 309 ELAERYGNEPTFAQWAAAAGVNQRTL-------RKQNDK---SNIRLVISIAKNYQGAGM 368
            L+E+   +P  ++WA A  +            R+  DK   SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 369 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEA 428
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 429 TYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 488
             R+K+  K L  E GR P ++EIA    +++++L  +  + + P SLE  IG  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 489 SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEI 548
            + I + + ET ED + K  +++DLEKVLDSL+PRE+ V+R R+G++DGRMKTL+EIG+I
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 549 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 569
             V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of IVF0013881 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 7.0e-67
Identity = 158/386 (40.93%), Postives = 238/386 (61.66%), Query Frame = 0


Query: 206 SEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPF-------------KSGS 265
           ++  ELL   L  + T K+KR + +KA  T A  +  T++ P              +   
Sbjct: 17  TQATELLDPALKPAET-KAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDED 76

Query: 266 SSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERY 325
           ++ K ++ +++    D +R         RLL A EE+EL+  I DLL LER+++EL E+ 
Sbjct: 77  AAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQL 136

Query: 326 GNEPTFAQWAAAAGVN----QRTL---RKQNDK---SNIRLVISIAKNYQGAGMNLQDLV 385
              P+ A+WAAA        +R L   R+  DK   SN+RLV+SIAK Y   G++ QDL+
Sbjct: 137 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 196

Query: 386 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKE 445
           QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E   R+K+
Sbjct: 197 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 256

Query: 446 ARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD 505
             K L  E GR P ++EIA    +++++L  +  + + P SLE  IG  ++ +  + I +
Sbjct: 257 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 316

Query: 506 PEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRE 565
            + ET ED + K  +++DLE VL +L+PRE+ V+R R+G++DGRMKTL+EIG++  V+RE
Sbjct: 317 ADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRE 376

Query: 566 RIRQIESCAFRKLKNKKRTKHLQQYL 569
           RIRQIE+ A RKL++  R   L++Y+
Sbjct: 377 RIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of IVF0013881 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-59
Identity = 154/417 (36.93%), Postives = 224/417 (53.72%), Query Frame = 0


Query: 201 DVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSS 260
           D +   E++EL  +E S+S   K  R+     RR  A +K  T                 
Sbjct: 23  DEDFDDEDIELELEETSDSNDGKKTRRLASARRRDAARKKPYT----------------- 82

Query: 261 LQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE------------- 320
                  D +R         RLL A EE+EL+  I DLLKLER++E+             
Sbjct: 83  ------EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQV 142

Query: 321 ---------LAERYGNEPTFAQWAAAAGVNQRTL------------------------RK 380
                    + E+   EP  +   A  G  + T                         R+
Sbjct: 143 FLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRR 202

Query: 381 QNDK---SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 440
             +K   SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WW
Sbjct: 203 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 262

Query: 441 IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL 500
           I+QA+ + ++DQSRTIRLP H+ E   R+K+  K L  E  R P ++EIA    +++++L
Sbjct: 263 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKL 322

Query: 501 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 560
             +  + + P SLE  IG  ++ +  + I + + ET ED + K  +++DLE VLD+L+PR
Sbjct: 323 RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPR 382

Query: 561 EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 569
           E+ V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 383 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[Close]

BLAST of IVF0013881 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-59
Identity = 137/356 (38.48%), Postives = 209/356 (58.71%), Query Frame = 0


Query: 222 VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSR 281
           V+SKRQ ER+A+  RA +        +    +S KK+   Q  D  D L+       T +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 247

Query: 282 LLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQ----------RT 341
           LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++           R+
Sbjct: 248 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 307

Query: 342 LRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 401
            R++   +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 308 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 367

Query: 402 IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL 461
           I+Q++RK +   SRTIRLP ++     +V EARK  + E    P  +E+A   G+S ++L
Sbjct: 368 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 427

Query: 462 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 521
             +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P+
Sbjct: 428 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 487

Query: 522 EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 568
           E+++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 488 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of IVF0013881 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1055.0 bits (2727), Expect = 1.1e-304
Identity = 565/580 (97.41%), Postives = 569/580 (98.10%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 571
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of IVF0013881 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 1031.6 bits (2666), Expect = 1.3e-297
Identity = 552/580 (95.17%), Postives = 563/580 (97.07%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTL+VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQ SPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRP+EGDALEPSTTESDD+EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSV+ FKSGSSSRKKR+S+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLL ENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 571
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of IVF0013881 vs. ExPASy TrEMBL
Match: A0A1S3CBA5 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1011.1 bits (2613), Expect = 1.8e-291
Identity = 548/580 (94.48%), Postives = 552/580 (95.17%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYT                 SPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 571
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of IVF0013881 vs. ExPASy TrEMBL
Match: A0A5A7T955 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00600 PE=3 SV=1)

HSP 1 Score: 998.8 bits (2581), Expect = 9.1e-288
Identity = 535/548 (97.63%), Postives = 537/548 (97.99%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 539
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

[Close]

BLAST of IVF0013881 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 936.0 bits (2418), Expect = 7.3e-269
Identity = 510/587 (86.88%), Postives = 531/587 (90.46%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHHH+FLPTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKAR 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT+EELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEK  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRK+ +          KSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 571
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of IVF0013881 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 1051 bits (2717), Expect = 0.0
Identity = 565/580 (97.41%), Postives = 569/580 (98.10%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 570
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of IVF0013881 vs. NCBI nr
Match: XP_004154029.1 (RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical protein Csa_004860 [Cucumis sativus])

HSP 1 Score: 1027 bits (2656), Expect = 0.0
Identity = 552/580 (95.17%), Postives = 563/580 (97.07%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTL+VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQ SPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRP+EGDALEPSTTESDD+EPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSV+ FKSGSSSRKKR+S+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLL ENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 570
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of IVF0013881 vs. NCBI nr
Match: XP_008460093.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo])

HSP 1 Score: 1007 bits (2603), Expect = 0.0
Identity = 548/580 (94.48%), Postives = 552/580 (95.17%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYT                 SPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 570
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of IVF0013881 vs. NCBI nr
Match: KAA0039984.1 (RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] >TYK24518.1 RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 996 bits (2575), Expect = 0.0
Identity = 535/548 (97.63%), Postives = 537/548 (97.99%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 538
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

[Close]

BLAST of IVF0013881 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 993 bits (2568), Expect = 0.0
Identity = 538/581 (92.60%), Postives = 554/581 (95.35%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNS-HHHSFLPTAYSSYTKVRDPHSLRTQCILSAASP 60
           MSCLLPQFKCHPETFSIQFKTAAN + HHH+FLPTA SSYTKVRDPHSLRTQCILSAASP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYAPHHHTFLPTANSSYTKVRDPHSLRTQCILSAASP 60

Query: 61  PTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120
           PTSTGTATTLNVDRL LPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA
Sbjct: 61  PTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120

Query: 121 EAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEP 180
           EAV LAKAAVKVARDAALLANN NSSRAG KS+ SP+PDALHFKWAQFMESERADIIGEP
Sbjct: 121 EAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESERADIIGEP 180

Query: 181 VGVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAE 240
           VGVN RP+E DAL+PSTT+SDD+EPTSEELELLQDELSESITV+SKRQTERKARRTRAAE
Sbjct: 181 VGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAE 240

Query: 241 KTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           KT TSVV  KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDLL
Sbjct: 241 KTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND----------KSNIRLVISIAK 360
           KLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRK+ +          KSNIRLVISIAK
Sbjct: 301 KLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 570
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 581

[Close]

BLAST of IVF0013881 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 617.5 bits (1591), Expect = 1.1e-176
Identity = 364/594 (61.28%), Postives = 437/594 (73.57%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPPT 61
           SCLLPQFKC P++FSI F+T        SF    ++  +    P     QC +S  SP  
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT--------SFCAPKHNKGSVFFQP-----QCAVS-TSPAL 62

Query: 62  STGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   + L+V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMES 181
            + AAAAEAV LA+AAVKVA+DA L   +NN N   + T  + S        KW QF E 
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRS--------KWDQFTEK 182

Query: 182 ERADIIGEPVGVNKRPIEGDALEPSTTESDDV----EPTSEELELLQDELSESITVKSKR 241
           ERA I+G  + V+   I  D +  S +  + +        EE+ELL+++ S S+ V+S R
Sbjct: 183 ERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTR 242

Query: 242 QTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT 301
           QTERKARR +  EKT + +   K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  
Sbjct: 243 QTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVR 302

Query: 302 EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKQND--------- 361
           EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR++           
Sbjct: 303 EEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKM 362

Query: 362 -KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 421
            KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAV
Sbjct: 363 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAV 422

Query: 422 RKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLM 481
           RK LSDQSR IRLPFHMVEATYRVKEARKQL SE G+HP ++EIAEA GLSMKRL AVL+
Sbjct: 423 RKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 482

Query: 482 TPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVI 541
           +PK PRSL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  REKQVI
Sbjct: 483 SPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVI 542

Query: 542 RWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 571
           RWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 RWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of IVF0013881 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 231.5 bits (589), Expect = 1.7e-60
Identity = 137/356 (38.48%), Postives = 209/356 (58.71%), Query Frame = 0


Query: 222 VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSR 281
           V+SKRQ ER+A+  RA +        +    +S KK+   Q  D  D L+       T +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 247

Query: 282 LLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQ----------RT 341
           LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++           R+
Sbjct: 248 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 307

Query: 342 LRKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 401
            R++   +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 308 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 367

Query: 402 IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL 461
           I+Q++RK +   SRTIRLP ++     +V EARK  + E    P  +E+A   G+S ++L
Sbjct: 368 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 427

Query: 462 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 521
             +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P+
Sbjct: 428 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 487

Query: 522 EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 568
           E+++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 488 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of IVF0013881 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 186.8 bits (473), Expect = 4.8e-47
Identity = 121/375 (32.27%), Postives = 218/375 (58.13%), Query Frame = 0


Query: 206 SEELELLQDELSESITVKSKRQTERKARRTR-AAEKTVTSVVPFKSGSSSRKKRSSLQEV 265
           S+  EL+    ++ + V S+R+ ++KARR+   AE    S +P       R   +++   
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPI----GLRTTWNNIDVP 263

Query: 266 DYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAA 325
               P +Y +     SR      E E+S G++ +  +ER++ +L E  G   + + WAAA
Sbjct: 264 RVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAA 323

Query: 326 AGVNQRTL----------RKQNDKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 385
           AG+N++ L          R +  KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE
Sbjct: 324 AGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAE 383

Query: 386 KFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENG-R 445
           +FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L + +G +
Sbjct: 384 RFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIK 443

Query: 446 HPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI 505
           +  D+EIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ E+ ++
Sbjct: 444 YAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVM 503

Query: 506 KQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFR 565
           +Q  ++D+  +L+ L PREKQV+  R+G++D R K+L+EIG+++ VS+E IR+IE  A  
Sbjct: 504 RQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMA 563

Query: 566 KLKNKKRTKHLQQYL 569
           KL+++   + L+ YL
Sbjct: 564 KLRDQPNAEDLRYYL 569

[Close]

BLAST of IVF0013881 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 177.2 bits (448), Expect = 3.8e-44
Identity = 109/303 (35.97%), Postives = 172/303 (56.77%), Query Frame = 0


Query: 278 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRT-----L 337
           S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+      
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 338 RKQNDKSNI-----RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 397
           R++  +  I     RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 398 AHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLS 457
            +WWIKQA+ + ++ +SR ++LP  M E T +V EA   L  +  R P  +EIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 458 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDS 517
           +  +   +   ++P SL++    N  +   E++  P+    E+M+ ++ MK ++E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 518 LNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 571
           L  RE +V+   FG+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 417

[Close]

BLAST of IVF0013881 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 141.0 bits (354), Expect = 3.0e-33
Identity = 128/422 (30.33%), Postives = 214/422 (50.71%), Query Frame = 0


Query: 194 PSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFK---- 253
           P+ T+ +  E   ++ +L+   + E+I +  K   E+      + EK V+S  P K    
Sbjct: 89  PNGTDKELEEECYDDDDLISHSV-EAILLLQKSMLEKS--WNLSFEKAVSSEYPGKGTIR 148

Query: 254 ---------SGSSSRKKR------------SSLQEVDYSDPLR-YLRATTSTSRLLTATE 313
                    SG S+R++R             ++ +V     +R Y++   S   +L+  E
Sbjct: 149 KKKIPVITCSGISARQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISED-VLSHVE 208

Query: 314 ELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTL----------RKQND 373
            + LS+ I+  L+L+  +  L +R G EP+  Q A +  +++  L          R++  
Sbjct: 209 VVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLA 268

Query: 374 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 433
            SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V 
Sbjct: 269 MSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVS 328

Query: 434 KFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMT 493
           + L D SRT+RLP H+ E    ++ A K  L E G  P    IAE+  +S K++      
Sbjct: 329 RALVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKVRNATEA 388

Query: 494 PKAPRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-S 553
                SL++    + N  P E     I+D   E       +D+     +K+++ K++  +
Sbjct: 389 VSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISAT 448

Query: 554 LNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 570
           L  REK++IR  +G+ D    T ++I + +G+SRER+RQ+   A  KLK+  R + ++  
Sbjct: 449 LGEREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAM 500

The following BLAST results are available for this feature:

BLAST of IVF0013881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	1.6e-175	61.28	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	2.6e-69	44.88	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	7.0e-67	40.93	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P52322	2.4e-59	36.93	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
Q9LD95	2.4e-59	38.48	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0013881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD00	1.1e-304	97.41	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A0A0K917	1.3e-297	95.17	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
A0A1S3CBA5	1.8e-291	94.48	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A5A7T955	9.1e-288	97.63	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1DSR7	7.3e-269	86.88	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]

BLAST of IVF0013881 vs. NCBI nr


Match Name	Identity	Description
XP_008460092.1	97.41	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
XP_004154029.1	95.17	RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical prot...	[more]
XP_008460093.1	94.48	PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]	[more]
KAA0039984.1	97.63	RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] >TYK24518...	[more]
XP_038875580.1	92.60	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]

BLAST of IVF0013881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	1.1e-176	61.28	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.7e-60	38.48	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	4.8e-47	32.27	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	3.8e-44	35.97	sigma factor 4	[more]
AT1G64860.1	3.0e-33	30.33	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 529..544 score: 54.92 coord: 544..555 score: 59.57 coord: 508..520 score: 48.64 coord: 384..392 score: 82.44 coord: 360..373 score: 52.4
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 529..555
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 268..300 e-value: 7.6E-5 score: 22.6
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 504..556 e-value: 4.5E-20 score: 70.9
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 163..408 e-value: 1.2E-37 score: 132.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..207
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 39..569
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 39..569
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 498..556 e-value: 1.59181E-14 score: 65.9738
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 491..570 e-value: 3.3E-28 score: 99.2
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 409..486 e-value: 2.7E-14 score: 55.3
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 1..570 e-value: 2.9E-172 score: 572.4
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 415..491 e-value: 2.8E-16 score: 59.4
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 339..558 e-value: 8.9E-32 score: 108.0
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 339..405 e-value: 3.4E-18 score: 65.2
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 404..455
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 468..567
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 267..406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013881.1	IVF0013881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity