IVF0013848 (gene) Melon (IVF77) v1

Overview


Name	IVF0013848
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr05: 14657854 .. 14658333 (-)
RNA-Seq Expression	IVF0013848
Synteny	IVF0013848

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCATGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGACAGCCCAAGATCGACAGAAAGTTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAAGTGTTATTCGTTTCGGAAGAAAAGGTAAGTTAAGTCCAAGATATATTGGGTCATATCAGATATCAGAACGAGTGGGACTAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCACATGTGTTGCAAGAGCAACCCGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTTAG

mRNA sequence

ATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCATGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGACAGCCCAAGATCGACAGAAAGTTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAAGTGTTATTCGTTTCGGAAGAAAAGGTAAGTTAAGTCCAAGATATATTGGGTCATATCAGATATCAGAACGAGTGGGACTAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCACATGTGTTGCAAGAGCAACCCGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTTAG

Coding sequence (CDS)

ATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCATGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGACAGCCCAAGATCGACAGAAAGTTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAAGTGTTATTCGTTTCGGAAGAAAAGGTAAGTTAAGTCCAAGATATATTGGGTCATATCAGATATCAGAACGAGTGGGACTAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCACATGTGTTGCAAGAGCAACCCGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTTAG

Protein sequence

MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKRRRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV

Homology

[Close]

BLAST of IVF0013848 vs. ExPASy TrEMBL
Match: A0A5A7V8M7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00210 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1    MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
            MAPYEALYGRP RTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR
Sbjct: 1024 MAPYEALYGRPYRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 1083

Query: 61   RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
            RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR
Sbjct: 1084 RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 1143

Query: 121  IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 160
            IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
Sbjct: 1144 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 1182

[Close]

BLAST of IVF0013848 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 4.6e-80
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1    MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
            MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK Y DKR
Sbjct: 1172 MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRIAQDRQKSYTDKR 1231

Query: 61   RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
            RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIGSYQI+ERVG AAYRLELPIELAR
Sbjct: 1232 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGSYQITERVGPAAYRLELPIELAR 1291

Query: 121  IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 160
            IHDVFHVSMLRKYIPDPSHVLQEQP+ELKEDLSYVEEPV
Sbjct: 1292 IHDVFHVSMLRKYIPDPSHVLQEQPLELKEDLSYVEEPV 1330

[Close]

BLAST of IVF0013848 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.0e-80
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1    MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
            MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKR
Sbjct: 1343 MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR 1402

Query: 61   RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
            RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPIELAR
Sbjct: 1403 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELAR 1462

Query: 121  IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 160
            IHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Sbjct: 1463 IHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPV 1501

[Close]

BLAST of IVF0013848 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.0e-80
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1    MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
            MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKR
Sbjct: 1381 MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR 1440

Query: 61   RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
            RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPIELAR
Sbjct: 1441 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELAR 1500

Query: 121  IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 160
            IHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Sbjct: 1501 IHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPV 1539

[Close]

BLAST of IVF0013848 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.0e-80
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1    MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
            MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKR
Sbjct: 1381 MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR 1440

Query: 61   RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
            RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPIELAR
Sbjct: 1441 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELAR 1500

Query: 121  IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 160
            IHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Sbjct: 1501 IHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPV 1539

[Close]

BLAST of IVF0013848 vs. NCBI nr
Match: KAA0065718.1 (DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 302 bits (774), Expect = 6.40e-103
Identity = 151/159 (94.97%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
           MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQ TTNNIKLIRENLR AQDRQK YADKR
Sbjct: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQTTTNNIKLIRENLRKAQDRQKSYADKR 60

Query: 61  RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
           RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPIELAR
Sbjct: 61  RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELAR 120

Query: 121 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 159
           IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV
Sbjct: 121 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 159

[Close]

BLAST of IVF0013848 vs. NCBI nr
Match: KAA0026296.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 302 bits (773), Expect = 3.19e-101
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
           MAPYEALYGRPC+TPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKR
Sbjct: 79  MAPYEALYGRPCKTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR 138

Query: 61  RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
           RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPIELAR
Sbjct: 139 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELAR 198

Query: 121 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 159
           IHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Sbjct: 199 IHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPV 237

[Close]

BLAST of IVF0013848 vs. NCBI nr
Match: KAA0039736.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (772), Expect = 1.15e-100
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
           MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKR
Sbjct: 107 MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR 166

Query: 61  RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
           RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPI+LAR
Sbjct: 167 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIKLAR 226

Query: 121 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 159
           IHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Sbjct: 227 IHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPV 265

[Close]

BLAST of IVF0013848 vs. NCBI nr
Match: KAA0046281.1 (DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (761), Expect = 1.51e-100
Identity = 148/159 (93.08%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
           MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITTNNIKLIRENLR AQDRQK YADKR
Sbjct: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR 60

Query: 61  RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
           RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYI  YQI+ERVG AAYRLELPIELAR
Sbjct: 61  RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIRPYQITERVGPAAYRLELPIELAR 120

Query: 121 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 159
           I+DVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEP+
Sbjct: 121 IYDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPI 159

[Close]

BLAST of IVF0013848 vs. NCBI nr
Match: KAA0051020.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 301 bits (771), Expect = 1.63e-100
Identity = 150/159 (94.34%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MAPYEALYGRPCRTPVCWNEVGERKLVGHELVQITTNNIKLIRENLRTAQDRQKVYADKR 60
           MAPYEALYGRPCRTPVCWNEVGERKLVG ELVQITT+NIKLIRENLR AQDRQK YADKR
Sbjct: 107 MAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTSNIKLIRENLRKAQDRQKSYADKR 166

Query: 61  RRNLEFQVGDQVFLKLSPWRSVIRFGRKGKLSPRYIGSYQISERVGLAAYRLELPIELAR 120
           RRNLEFQVGDQVFLKLSPWR VIRFGRKGKLSPRYIG YQI+ERVG AAYRLELPIELAR
Sbjct: 167 RRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELAR 226

Query: 121 IHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYVEEPV 159
           IHDVFHVSMLRKYIPDPSHVLQ+QPVELKEDLSYVEEPV
Sbjct: 227 IHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPV 265

[Close]

BLAST of IVF0013848 vs. TAIR 10
Match: AT1G42190.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 110 YRLELPIELARIHDVFHVSMLRKYIPDPSHVLQEQPVELKEDLSYV 156
           Y+L+LP  +   H VFHVSMLRK I    +V+ E P +L E++  V
Sbjct: 2   YKLDLPTLMDAFHKVFHVSMLRKCITHQENVISEPPPDLLENMMIV 47

The following BLAST results are available for this feature:

BLAST of IVF0013848 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013848 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8M7	9.0e-84	99.37	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5A7SX06	4.6e-80	94.97	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U2V7	6.0e-80	94.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	6.0e-80	94.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	6.0e-80	94.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of IVF0013848 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065718.1	6.40e-103	94.97	DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0026296.1	3.19e-101	94.34	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0039736.1	1.15e-100	94.34	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0046281.1	1.51e-100	93.08	DNA/RNA polymerase superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0051020.1	1.63e-100	94.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013848 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42190.1	2.4e-04	45.65	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..159
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 1..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013848.1	IVF0013848.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity