IVF0013835 (gene) Melon (IVF77) v1

Overview
NameIVF0013835
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr11: 18001045 .. 18001644 (+)
RNA-Seq ExpressionIVF0013835
SyntenyIVF0013835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGGTAAGAATGATGAGGGAGAAGATGCCAAGATACAATTTGATGTCGACCATTGTTACCGAAAGTAGGATTAAGTTATTGAAAAGAACGGTTTAGGTCATTATAGAAATACATGGATCGACGTGCAGTGGCTTCGACTGGAATGACGAGCTTAAGTGCATCATTGCAGAGAAGGACGTCTTCGACAGTTGAGTTAGTATAAAAAGCTAGATGAATGCGAATTTTTTACATCATTATAATCAAATACTGACGACTGTTTTTTTTTCACTATTTGTACAGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGTCTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGGAGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA

mRNA sequence

ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGTCTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGGAGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA

Coding sequence (CDS)

ATGTCAGACAATGGGACCTTCAGACCCGATTACCTAGTCCAATTGACGCGTCCTGCAGCCAACGACCTACTAAACAAGCCTTTTCCGCTTTATGACGAGCTATTGTATGTCTTTAGTAAAGATCGTGCGACGGGGGCCCATGCAGAGACATTCGTTGATATCAGGTCCAATGTGCCAGGGGGAAGCAAAGGAGTTCAACAAGAAGATGGGCTAGATATGGAGTTCCCTACTATGTACAACCCAGGAATGAACATGTCGCCTGAAGACATGATGGGCGCACGACTTGGTAAGTCCATCGACTGTAGGTCGGTTCTAGTAGATTGA

Protein sequence

MSDNGTFRPDYLVQLTRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGARLGKSIDCRSVLVD
Homology
BLAST of IVF0013835 vs. ExPASy TrEMBL
Match: A0A5D3C0W3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002730 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.8e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF
Sbjct: 49  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 108

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDC 102
           PTMYNPGMNMSPEDMMGARLGKSIDC
Sbjct: 109 PTMYNPGMNMSPEDMMGARLGKSIDC 134

BLAST of IVF0013835 vs. ExPASy TrEMBL
Match: A0A5A7V3X7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003100 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 21  NDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYN 80
           NDLLNKPFPLYDELLYVF KDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYN
Sbjct: 53  NDLLNKPFPLYDELLYVFRKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMYN 112

Query: 81  PGMNMSPEDMMGARLGKSIDC 102
           PGMNMSPEDMMG RLGKSIDC
Sbjct: 113 PGMNMSPEDMMGTRLGKSIDC 133

BLAST of IVF0013835 vs. ExPASy TrEMBL
Match: A0A5A7V2R5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00370 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 65/96 (67.71%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 2   SDNGTFRPDYLVQLTRPAAN---DLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNV 61
           SDN TFRP YL QL R        LLNKPFP YDEL YVF KDR TGA  E F DI SNV
Sbjct: 111 SDNVTFRPGYLPQLVRMMGERMPGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNV 170

Query: 62  PGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGAR 95
           PG S GVQ EDGLDMEFPTM +  MN+S ED MGAR
Sbjct: 171 PGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 206

BLAST of IVF0013835 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.6e-22
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 18  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPT 77
           PAA  LLNKPF  YD L YVF KD+ATGAHAETF DI SN+  G   V  +DG+DMEFP 
Sbjct: 3   PAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPV 62

Query: 78  MYNPGMNMSPEDMMGARLGKSIDCRS 104
           M +P MNMSP+DMMG R G+S D R+
Sbjct: 63  MCSPRMNMSPKDMMGGRSGRSSDGRT 88

BLAST of IVF0013835 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 53/88 (60.23%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           T P A   LNKPFP YD L YVF K RATGAH+ETF DI SNV   +     EDG+DMEF
Sbjct: 42  THPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEF 101

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRS 104
           P M +P MNMSPEDM+G R  +S D R+
Sbjct: 102 PAMCSPRMNMSPEDMIGGRSSRSSDGRT 129

BLAST of IVF0013835 vs. NCBI nr
Match: TYK05020.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (461), Expect = 3.20e-56
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF
Sbjct: 49  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 108

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDC 101
           PTMYNPGMNMSPEDMMGARLGKSIDC
Sbjct: 109 PTMYNPGMNMSPEDMMGARLGKSIDC 134

BLAST of IVF0013835 vs. NCBI nr
Match: KAA0062004.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 6.54e-51
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 20  ANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMY 79
            NDLLNKPFPLYDELLYVF KDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMY
Sbjct: 52  TNDLLNKPFPLYDELLYVFRKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPTMY 111

Query: 80  NPGMNMSPEDMMGARLGKSIDC 101
           NPGMNMSPEDMMG RLGKSIDC
Sbjct: 112 NPGMNMSPEDMMGTRLGKSIDC 133

BLAST of IVF0013835 vs. NCBI nr
Match: KAA0060069.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 2.07e-31
Identity = 65/96 (67.71%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 2   SDNGTFRPDYLVQLTRPAAN---DLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNV 61
           SDN TFRP YL QL R        LLNKPFP YDEL YVF KDR TGA  E F DI SNV
Sbjct: 111 SDNVTFRPGYLPQLVRMMGERMPGLLNKPFPHYDELSYVFEKDRTTGASVEMFTDIGSNV 170

Query: 62  PGGSKGVQQEDGLDMEFPTMYNPGMNMSPEDMMGAR 94
           PG S GVQ EDGLDMEFPTM +  MN+S ED MGAR
Sbjct: 171 PGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 206

BLAST of IVF0013835 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.43e-28
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 0

Query: 18  PAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEFPT 77
           PAA  LLNKPF  YD L YVF KD+ATGAHAETF DI SN+  G   V  +DG+DMEFP 
Sbjct: 3   PAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFPV 62

Query: 78  MYNPGMNMSPEDMMGARLGKSIDCRS 103
           M +P MNMSP+DMMG R G+S D R+
Sbjct: 63  MCSPRMNMSPKDMMGGRSGRSSDGRT 88

BLAST of IVF0013835 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 9.23e-27
Identity = 53/88 (60.23%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 16  TRPAANDLLNKPFPLYDELLYVFSKDRATGAHAETFVDIRSNVPGGSKGVQQEDGLDMEF 75
           T P A   LNKPFP YD L YVF K RATGAH+ETF DI SNV   +     EDG+DMEF
Sbjct: 42  THPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEF 101

Query: 76  PTMYNPGMNMSPEDMMGARLGKSIDCRS 103
           P M +P MNMSPEDM+G R  +S D R+
Sbjct: 102 PAMCSPRMNMSPEDMIGGRSSRSSDGRT 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C0W38.8e-43100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V3X71.3e-3897.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V2R51.4e-2467.71Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TYU48.6e-2263.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DLC61.6e-2060.23Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK05020.13.20e-56100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0062004.16.54e-5196.34retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060069.12.07e-3167.71retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048148.11.43e-2863.95retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... [more]
KAA0055070.19.23e-2760.23retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013835.1IVF0013835.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0046872 metal ion binding