IVF0013812 (gene) Melon (IVF77) v1

Overview


Name	IVF0013812
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 23541550 .. 23541729 (+)
RNA-Seq Expression	IVF0013812
Synteny	IVF0013812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATATTAAATGGCATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGCAGGGAAAGACGGAGAAGACGAAATAACAGAAGGAAAACGAATCGCGAGGAAAAATAGAAAGATGGAAAGGCAAACCTAA

mRNA sequence

ATGGAAATATTAAATGGCATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGCAGGGAAAGACGGAGAAGACGAAATAACAGAAGGAAAACGAATCGCGAGGAAAAATAGAAAGATGGAAAGGCAAACCTAA

Coding sequence (CDS)

ATGGAAATATTAAATGGCATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATCGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGCAGGGAAAGACGGAGAAGACGAAATAACAGAAGGAAAACGAATCGCGAGGAAAAATAGAAAGATGGAAAGGCAAACCTAA

Protein sequence

MEILNGINKELKNKKDDGKKSQKRKREKKKDEIAGKDGEDEITEGKRIARKNRKMERQT

Homology

[Close]

BLAST of IVF0013812 vs. ExPASy TrEMBL
Match: A0A5A7SVQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00530 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.9e-04
Identity = 28/41 (68.29%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 19 KKSQKRKREKKKDEIAGKDGEDEITEGKRIARKNRKMERQT 60
          ++++K+++E KKDEIAG+DG+DEIT G+RIARKNRKME QT
Sbjct: 3  ERNRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQT 43

[Close]

BLAST of IVF0013812 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 1.51e-05
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 21 SQKRKREKKKDEIAGKDGEDEITEGKRIARKNRKMERQT 59
          ++K+++E KKDEIAG+DG+DEIT G+RIARKNRKME QT
Sbjct: 5  NRKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQT 43

The following BLAST results are available for this feature:

BLAST of IVF0013812 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVQ8	9.9e-04	68.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0013812 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	1.51e-05	71.79	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013812 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013812.1	IVF0013812.1	mRNA