IVF0013781 (gene) Melon (IVF77) v1

Overview


Name	IVF0013781
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 23842669 .. 23842905 (+)
RNA-Seq Expression	IVF0013781
Synteny	IVF0013781

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCGAATGCACTGCATCCGAGAGAGCGAGCGCCGACGACGCGGCCCGCAATGACAACCGAAGATGTCAAGGCGGAACGCGATGCGGGCTATCGGGTTCGTTGTCCACCCAAAGATGGGTGTCAACAGAAAGGGGCCAACGGGACGCGTCGCTTCCATCGCGTGAGGTACCGATGCAAGAACCGATCGATTGTGACCGCTCGAACTCAAGCTTTGTTCGGGGCACGTCAATGA

mRNA sequence

ATGCCACCGAATGCACTGCATCCGAGAGAGCGAGCGCCGACGACGCGGCCCGCAATGACAACCGAAGATGTCAAGGCGGAACGCGATGCGGGCTATCGGGTTCGTTGTCCACCCAAAGATGGGTGTCAACAGAAAGGGGCCAACGGGACGCGTCGCTTCCATCGCGTGAGGTACCGATGCAAGAACCGATCGATTGTGACCGCTCGAACTCAAGCTTTGTTCGGGGCACGTCAATGA

Coding sequence (CDS)

ATGCCACCGAATGCACTGCATCCGAGAGAGCGAGCGCCGACGACGCGGCCCGCAATGACAACCGAAGATGTCAAGGCGGAACGCGATGCGGGCTATCGGGTTCGTTGTCCACCCAAAGATGGGTGTCAACAGAAAGGGGCCAACGGGACGCGTCGCTTCCATCGCGTGAGGTACCGATGCAAGAACCGATCGATTGTGACCGCTCGAACTCAAGCTTTGTTCGGGGCACGTCAATGA

Protein sequence

MPPNALHPRERAPTTRPAMTTEDVKAERDAGYRVRCPPKDGCQQKGANGTRRFHRVRYRCKNRSIVTARTQALFGARQ

Homology

[Close]

BLAST of IVF0013781 vs. ExPASy TrEMBL
Match: A0A5D3BW21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00500 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 37/74 (50.00%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 1  MPPNALHPRERAPTTRPAMTTEDVKAERDAGYRVRCPPKDGCQQKGANGTRRFHRVRY-R 60
          MPPNALHPRERA TTRP MTT+DVK E DAGYR       GC+       R   R RY  
Sbjct: 1  MPPNALHPRERAATTRPTMTTKDVKGELDAGYR-------GCRVAAQGRARNVVRARYEH 60

Query: 61 CKNRSIVTARTQAL 74
          C     +   T +L
Sbjct: 61 CVTHVKIATETPSL 67

[Close]

BLAST of IVF0013781 vs. NCBI nr
Match: TYK03168.1 (hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.22e-09
Identity = 37/74 (50.00%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 1  MPPNALHPRERAPTTRPAMTTEDVKAERDAGYRVRCPPKDGCQQKGANGTRRFHRVRYR- 60
          MPPNALHPRERA TTRP MTT+DVK E DAGYR       GC+       R   R RY  
Sbjct: 1  MPPNALHPRERAATTRPTMTTKDVKGELDAGYR-------GCRVAAQGRARNVVRARYEH 60

Query: 61 CKNRSIVTARTQAL 73
          C     +   T +L
Sbjct: 61 CVTHVKIATETPSL 67

The following BLAST results are available for this feature:

BLAST of IVF0013781 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013781 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW21	1.3e-06	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0013781 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03168.1	3.22e-09	50.00	hypothetical protein E5676_scaffold11G00500 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013781 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013781.2	IVF0013781.2	mRNA