IVF0013766 (gene) Melon (IVF77) v1

Overview


Name	IVF0013766
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transducin/WD40 repeat-like superfamily protein
Location	chr08: 5906230 .. 5906589 (-)
RNA-Seq Expression	IVF0013766
Synteny	IVF0013766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAGAAATCAAGACGAGTCCCCAGAAAGATCAAGCCCCCGGCCAATCTCTGCCTCCGAAAACCAAGATCCGACGACGCCAAGAAGAACAACAAGCCCCCGTCGGCTATGACCCTGTTCGAGCGCCTCCGTGAGGCCGTTTTCCGATTCATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCACCGCCGGAGCCGCCTTCCAAGACGACGTAGTCGTTAGGCGGCGACACTCGTATCCTAACGTCGACCACCACCACAGTGAAGCGGTTGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGATCACGAGGTAATTCTGATCGGTGGACGCGGATGA

mRNA sequence

ATGGCCGAGAAATCAAGACGAGTCCCCAGAAAGATCAAGCCCCCGGCCAATCTCTGCCTCCGAAAACCAAGATCCGACGACGCCAAGAAGAACAACAAGCCCCCGTCGGCTATGACCCTGTTCGAGCGCCTCCGTGAGGCCGTTTTCCGATTCATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCACCGCCGGAGCCGCCTTCCAAGACGACGTAGTCGTTAGGCGGCGACACTCGTATCCTAACGTCGACCACCACCACAGTGAAGCGGTTGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGATCACGAGGTAATTCTGATCGGTGGACGCGGATGA

Coding sequence (CDS)

ATGGCCGAGAAATCAAGACGAGTCCCCAGAAAGATCAAGCCCCCGGCCAATCTCTGCCTCCGAAAACCAAGATCCGACGACGCCAAGAAGAACAACAAGCCCCCGTCGGCTATGACCCTGTTCGAGCGCCTCCGTGAGGCCGTTTTCCGATTCATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCACCGCCGGAGCCGCCTTCCAAGACGACGTAGTCGTTAGGCGGCGACACTCGTATCCTAACGTCGACCACCACCACAGTGAAGCGGTTGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGATCACGAGGTAATTCTGATCGGTGGACGCGGATGA

Protein sequence

MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKATNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG

Homology

[Close]

BLAST of IVF0013766 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 120
           TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119

[Close]

BLAST of IVF0013766 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.0e-51
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPP NLCLRKPRS DAKK  KPPS MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 118
           TNHHP AGA FQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD EVIL  G
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRG 116

[Close]

BLAST of IVF0013766 vs. ExPASy TrEMBL
Match: A0A6A1UNG7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G020135 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPANLCLRKPRSDD-AKKNNKPPSAMTLFERLREAVFRFIMLCALSKAT 62
           EK +  PRK+K   +LC+ + RS+    K NK PS MTL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPRKLK--TSLCIPRFRSNSCTNKINKAPSPMTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD 110
           NH   +  A        +R  YPN D HHSEAVA+CIEFIK KA +D+
Sbjct: 62  NHSECSADA--------QRCYYPN-DPHHSEAVAECIEFIKKKASTDE 98

[Close]

BLAST of IVF0013766 vs. ExPASy TrEMBL
Match: A0A5C7HUV3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPANLCLRK--PRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 62
           EK R  PRK+K   NLC+ +     ++ +  NK  + +TL ER REAVFR IML ALSKA
Sbjct: 2   EKPRGSPRKMK--TNLCIPRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALSKA 61

Query: 63  TN--HHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHE 112
           TN  HH T G++         R  Y   D HHSEAVADCIEFIK KA +DD+E
Sbjct: 62  TNDHHHHTVGSSRVS------RSYYSPADPHHSEAVADCIEFIKKKAVADDNE 106

[Close]

BLAST of IVF0013766 vs. ExPASy TrEMBL
Match: A0A2N9H458 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34435 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAM-TLFERLREAVFRFIMLCALSKAT 62
           EK +  P+K+K   +LC+ + + +     NK  S + TL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPKKLK--TSLCIPRLKGNGCTNKNKGLSPLTTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDH 111
           NH  +A         V+R H YP  D HHSEAVADCIEFIK KA +D++
Sbjct: 62  NHTESAD--------VQRCH-YPINDPHHSEAVADCIEFIKKKASTDEN 99

[Close]

BLAST of IVF0013766 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (613), Expect = 5.57e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119
           TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGGRG 119

[Close]

BLAST of IVF0013766 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 207 bits (528), Expect = 1.56e-66
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPP NLCLRKPRS DAKK  KPPS MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117
           TNHHP AGA FQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD EVIL  G
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRG 116

[Close]

BLAST of IVF0013766 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (354), Expect = 2.35e-39
Identity = 82/113 (72.57%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K          R DD K N+K P AMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKTRRVPGKAKL---------RGDDMK-NSKAPPAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVI 113
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDD  ++
Sbjct: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIIL 101

[Close]

BLAST of IVF0013766 vs. NCBI nr
Match: KAB1201821.1 (hypothetical protein CJ030_MR8G020135 [Morella rubra])

HSP 1 Score: 89.4 bits (220), Expect = 3.97e-20
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPANLCLRKPRSDDA-KKNNKPPSAMTLFERLREAVFRFIMLCALSKAT 62
           EK +  PRK+K   +LC+ + RS+    K NK PS MTL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPRKLK--TSLCIPRFRSNSCTNKINKAPSPMTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD 109
           NH   +  A        +R  YPN D HHSEAVA+CIEFIK KA +D+
Sbjct: 62  NHSECSADA--------QRCYYPN-DPHHSEAVAECIEFIKKKASTDE 98

[Close]

BLAST of IVF0013766 vs. NCBI nr
Match: TXG60569.1 (hypothetical protein EZV62_015142 [Acer yangbiense])

HSP 1 Score: 89.0 bits (219), Expect = 6.97e-20
Identity = 60/115 (52.17%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPANLCLRKPR----SDDAKKNNKPPSAMTLFERLREAVFRFIMLCALS 62
           EK R  PRK+K   NLC+  PR     ++ +  NK  + +TL ER REAVFR IML ALS
Sbjct: 2   EKPRGSPRKMK--TNLCI--PRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALS 61

Query: 63  KATN--HHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHE 111
           KATN  HH T G++         R  Y   D HHSEAVADCIEFIK KA +DD+E
Sbjct: 62  KATNDHHHHTVGSSRVS------RSYYSPADPHHSEAVADCIEFIKKKAVADDNE 106

The following BLAST results are available for this feature:

BLAST of IVF0013766 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHP0	2.8e-61	100.00	Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0KGN3	2.0e-51	91.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1	[more]
A0A6A1UNG7	1.3e-15	53.70	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G020135 PE=4 SV=1	[more]
A0A5C7HUV3	2.3e-15	51.33	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1	[more]
A0A2N9H458	2.1e-13	49.54	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34435 PE=4 SV=1	[more]

BLAST of IVF0013766 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025678.1	5.57e-80	100.00	Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1...	[more]
KGN49339.2	1.56e-66	91.45	hypothetical protein Csa_003207 [Cucumis sativus]	[more]
KAG6603914.1	2.35e-39	72.57	hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB1201821.1	3.97e-20	53.70	hypothetical protein CJ030_MR8G020135 [Morella rubra]	[more]
TXG60569.1	6.97e-20	52.17	hypothetical protein EZV62_015142 [Acer yangbiense]	[more]

BLAST of IVF0013766 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 11..111
None	No IPR available	PANTHER	PTHR35111:SF1	EXPRESSED PROTEIN	coord: 11..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013766.2	IVF0013766.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:2000031	regulation of salicylic acid mediated signaling pathway
biological_process	GO:0010337	regulation of salicylic acid metabolic process